Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6OFK
DownloadVisualize
BU of 6ofk by Molmil
Crystal structure of green fluorescent protein (GFP); S65T; ih circular permutant (50-51)
Descriptor: ACETATE ION, Green Fluorescent Protein (GFP); S65T; ih circular permutant (50-51)
Authors:Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
Deposit date:2019-03-30
Release date:2019-07-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins.
J.Am.Chem.Soc., 141, 2019
2X9N
DownloadVisualize
BU of 2x9n by Molmil
High resolution structure of TbPTR1 in complex with cyromazine
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, ACETATE ION, DITHIANE DIOL, ...
Authors:Dawson, A, Tulloch, L.B, Barrack, K.L, Hunter, W.N.
Deposit date:2010-03-23
Release date:2010-06-30
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:High-Resolution Structures of Trypanosoma Brucei Pteridine Reductase Ligand Complexes Inform on the Placement of New Molecular Entities in the Active Site of a Potential Drug Target
Acta Crystallogr.,Sect.D, 66, 2010
2WSO
DownloadVisualize
BU of 2wso by Molmil
Structure of Cerulean Fluorescent Protein at physiological pH
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:Lelimousin, M, Noirclerc-Savoye, M, Lazareno-Saez, C, Paetzold, B, Le Vot, S, Chazal, R, Macheboeuf, P, Field, M.J, Bourgeois, D, Royant, A.
Deposit date:2009-09-08
Release date:2009-09-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Intrinsic Dynamics in Ecfp and Cerulean Control Fluorescence Quantum Yield.
Biochemistry, 48, 2009
7SAK
DownloadVisualize
BU of 7sak by Molmil
Crystal Structure of LaM4 Nanobody bound to mCherry
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, LaM4, ...
Authors:Cong, A.T.Q, Schellenberg, M.J.
Deposit date:2021-09-22
Release date:2022-09-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:High-efficiency recombinant protein purification using mCherry and YFP nanobody affinity matrices.
Protein Sci., 31, 2022
1OXD
DownloadVisualize
BU of 1oxd by Molmil
Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins
Descriptor: cyan fluorescent protein cfp
Authors:Hyun Bae, J, Rubini, M, Jung, G, Wiegand, G, Seifert, M.H, Azim, M.K, Kim, J.S, Zumbusch, A, Holak, T.A, Moroder, L, Huber, R, Budisa, N.
Deposit date:2003-04-02
Release date:2003-12-02
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins
J.Mol.Biol., 328, 2003
1OXE
DownloadVisualize
BU of 1oxe by Molmil
Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins
Descriptor: cyan fluorescent protein cfp
Authors:Hyun Bae, J, Rubini, M, Jung, G, Wiegand, G, Seifert, M.H, Azim, M.K, Kim, J.S, Zumbusch, A, Holak, T.A, Moroder, L, Huber, R, Budisa, N.
Deposit date:2003-04-02
Release date:2003-12-02
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Expansion of the Genetic Code Enables Design of a Novel "Gold" Class of Green Fluorescent Proteins
J.Mol.Biol., 328, 2003
2AWK
DownloadVisualize
BU of 2awk by Molmil
GFP R96M mature chromophore
Descriptor: MAGNESIUM ION, green fluorescent protein
Authors:Wood, T.I, Barondeau, D.P, Hitomi, C, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
Deposit date:2005-09-01
Release date:2006-04-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Defining the role of arginine 96 in green fluorescent protein fluorophore biosynthesis.
Biochemistry, 44, 2005
7QLI
DownloadVisualize
BU of 7qli by Molmil
Cis structure of rsKiiro at 290 K
Descriptor: GLYCEROL, SULFATE ION, rsKiiro
Authors:van Thor, J.J, Baxter, J.M.
Deposit date:2021-12-20
Release date:2023-07-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.155 Å)
Cite:Optical control of ultrafast structural dynamics in a fluorescent protein.
Nat.Chem., 15, 2023
3SRY
DownloadVisualize
BU of 3sry by Molmil
Engineered high-affinity halide-binding protein derived from YFP: halide-free
Descriptor: Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-07
Release date:2012-07-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.159 Å)
Cite:Determination of engineered chloride-binding site structures in fluorescent proteins reveals principles of halide recognition
To be Published
5OXA
DownloadVisualize
BU of 5oxa by Molmil
Structure of the S205A mutant of the Cyan Fluorescent Protein Cerulean at pH 7.0
Descriptor: Green fluorescent protein
Authors:Gotthard, G, von Stetten, D, Clavel, D, Noirclerc-Savoye, M, Royant, A.
Deposit date:2017-09-06
Release date:2017-11-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Chromophore Isomer Stabilization Is Critical to the Efficient Fluorescence of Cyan Fluorescent Proteins.
Biochemistry, 56, 2017
6OGC
DownloadVisualize
BU of 6ogc by Molmil
Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(2,3-F2Y), H148D; circular permutant (50-51)
Descriptor: Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(2,3-F2Y), H148D; circular permutant (50-51)
Authors:Lin, C.-Y, Boxer, S.G.
Deposit date:2019-04-02
Release date:2020-04-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.178 Å)
Cite:Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems.
J.Phys.Chem.B, 124, 2020
5G3Y
DownloadVisualize
BU of 5g3y by Molmil
Crystal structure of adenylate kinase ancestor 1 with Zn and ADP bound
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENYLATE KINSE, ZINC ION
Authors:Nguyen, V, Kutter, S, English, J, Kern, D.
Deposit date:2016-05-03
Release date:2016-12-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Evolutionary drivers of thermoadaptation in enzyme catalysis.
Science, 355, 2017
4RYS
DownloadVisualize
BU of 4rys by Molmil
Crystal structure of the green fluorescent rotein NowGFP (the variant of cyan Cerulean) at pH 4.8
Descriptor: GLYCEROL, NowGFP
Authors:Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
Deposit date:2014-12-17
Release date:2015-09-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Structure of the green fluorescent protein NowGFP with an anionic tryptophan-based chromophore.
Acta Crystallogr.,Sect.D, 71, 2015
3ST0
DownloadVisualize
BU of 3st0 by Molmil
Engineered medium-affinity halide-binding protein derived from YFP: halide-free
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, Green fluorescent protein
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-08
Release date:2012-07-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Visualization of Synaptic Inhibition with an Optogenetic Sensor Developed by Cell-Free Protein Engineering Automation.
J.Neurosci., 33, 2013
2HQK
DownloadVisualize
BU of 2hqk by Molmil
Crystal structure of a monomeric cyan fluorescent protein derived from Clavularia
Descriptor: ACETATE ION, CHLORIDE ION, Cyan fluorescent chromoprotein, ...
Authors:Henderson, J.N, Campbell, R.E, Ai, H, Remington, S.J.
Deposit date:2006-07-18
Release date:2007-01-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Directed evolution of a monomeric, bright and photostable version of Clavularia cyan fluorescent protein: structural characterization and applications in fluorescence imaging.
Biochem.J., 400, 2006
7A7N
DownloadVisualize
BU of 7a7n by Molmil
rsGreen0.7b in the green-off state
Descriptor: Green fluorescent protein
Authors:De Zitter, E, Dedecker, P, Van Meervelt, L.
Deposit date:2020-08-30
Release date:2021-02-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*.
Angew.Chem.Int.Ed.Engl., 60, 2021
4XOV
DownloadVisualize
BU of 4xov by Molmil
Structure of rsGreen0.7 in the green-off-state
Descriptor: rsGreen0.7
Authors:De Zitter, E, Van Meervelt, L.
Deposit date:2015-01-16
Release date:2015-09-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Expression-Enhanced Fluorescent Proteins Based on Enhanced Green Fluorescent Protein for Super-resolution Microscopy.
Acs Nano, 9, 2015
2QZ0
DownloadVisualize
BU of 2qz0 by Molmil
Mature Q183E variant of Green Fluorescent Protein Chromophore
Descriptor: Green fluorescent protein, MAGNESIUM ION
Authors:Wood, T.I, Barondeau, D.P, Hitomi, C, Tainer, J.A, Getzoff, E.D.
Deposit date:2007-08-15
Release date:2009-04-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Kinetically Isolated Reaction Intermediates Provide Structural Characterization of the GFP Fluorophore Biosynthesis Pathway
To be Published
2G2S
DownloadVisualize
BU of 2g2s by Molmil
Structure of S65G Y66S GFP variant after spontaneous peptide hydrolysis
Descriptor: Green fluorescent protein, MAGNESIUM ION
Authors:Barondeau, D.P.
Deposit date:2006-02-16
Release date:2006-04-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Understanding GFP Posttranslational Chemistry: Structures of Designed Variants that Achieve Backbone Fragmentation, Hydrolysis, and Decarboxylation.
J.Am.Chem.Soc., 128, 2006
8QEW
DownloadVisualize
BU of 8qew by Molmil
Eosinophil Derived Neurotoxin/RNase 2 in complex with Tartrate
Descriptor: L(+)-TARTARIC ACID, Non-secretory ribonuclease
Authors:Li, J, Kang, X, Prats-Ejarque, G, Boix, E.
Deposit date:2023-09-01
Release date:2024-09-11
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Eosinophil Derived Neurotoxin/RNase 2 in complex with Tartrate
To Be Published
6M9Z
DownloadVisualize
BU of 6m9z by Molmil
X-ray Structure of Branchiostoma floridae fluorescent protein lanFP6G
Descriptor: Fluorescent protein lanFP6G
Authors:Muslinkina, L, Pletneva, N, Pletnev, V, Pletnev, S.
Deposit date:2018-08-24
Release date:2019-04-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural Factors Enabling Successful GFP-Like Proteins with Alanine as the Third Chromophore-Forming Residue.
J. Mol. Biol., 431, 2019
6G7Q
DownloadVisualize
BU of 6g7q by Molmil
Trichodesmium Tery_3377 (IdiA) (FutA) in complex with iron and citrate ligands.
Descriptor: CHLORIDE ION, CITRATE ANION, Extracellular solute-binding protein, ...
Authors:Machelett, M.M, Tews, I.
Deposit date:2018-04-06
Release date:2018-09-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural and functional characterization of IdiA/FutA (Tery_3377), an iron-binding protein from the ocean diazotrophTrichodesmium erythraeum.
J. Biol. Chem., 293, 2018
4L1I
DownloadVisualize
BU of 4l1i by Molmil
Crystal structure of EGFP-based Calcium Sensor CatchER complexed with Ca
Descriptor: CALCIUM ION, EGFP-based Calcium Sensor CatchER
Authors:Zhang, Y, Weber, I.T.
Deposit date:2013-06-03
Release date:2013-12-11
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural basis for a hand-like site in the calcium sensor CatchER with fast kinetics.
Acta Crystallogr.,Sect.D, 69, 2013
2HFC
DownloadVisualize
BU of 2hfc by Molmil
Structure of S65T Y66F R96A GFP variant in precursor state
Descriptor: Green fluorescent protein, MAGNESIUM ION
Authors:Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
Deposit date:2006-06-23
Release date:2007-03-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The Case of the Missing Ring: Radical Cleavage of a Carbon-Carbon Bond and Implications for GFP Chromophore Biosynthesis
J.Am.Chem.Soc., 129, 2007
3RHB
DownloadVisualize
BU of 3rhb by Molmil
Crystal structure of the apo form of glutaredoxin C5 from Arabidopsis thaliana
Descriptor: GLUTATHIONE, Glutaredoxin-C5, chloroplastic, ...
Authors:Roret, T, Couturier, J, Tsan, P, Jacquot, J.P, Rouhier, N, Didierjean, C.
Deposit date:2011-04-11
Release date:2011-06-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Arabidopsis chloroplastic glutaredoxin c5 as a model to explore molecular determinants for iron-sulfur cluster binding into glutaredoxins.
J.Biol.Chem., 286, 2011

224931

數據於2024-09-11公開中

PDB statisticsPDBj update infoContact PDBjnumon