PDB: 245011 resultsInfo pagesStatus searchChemie searchBIRD

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5FXX	Crystal structure of JmjC domain of human histone demethylase UTY in complex with oxaloacetate Descriptor: 1,2-ETHANEDIOL, HISTONE DEMETHYLASE UTY, MANGANESE (II) ION, ... Authors: Nowak, R, Krojer, T, Johansson, C, Gileadi, C, Kupinska, K, von Delft, F, Arrowsmith, C.H, Bountra, C, Edwards, A, Oppermann, U. Deposit date: 2016-03-03 Release date: 2016-03-16 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Crystal Structure of Jmjc Domain of Human Histone Demethylase Uty in Complex with Oxaloacetate To be Published
8CLQ	Zearalenone lactonase of Streptomyces coelicoflavus mutant H286Y in complex with hydrolyzed zearalenone Descriptor: 2,4-dihydroxy-6-[(1E,10S)-10-hydroxy-6-oxoundec-1-en-1-yl]benzoic acid, Hydrolase Authors: Puehringer, D, Mlynek, G. Deposit date: 2023-02-17 Release date: 2024-02-28 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.53 Å) Cite: Bacterial Lactonases ZenA with Noncanonical Structural Features Hydrolyze the Mycotoxin Zearalenone. Acs Catalysis, 14, 2024
8V78	Crystal structure of the core catalytic domain of human inositol phosphate multikinase in complex with compound 14 Descriptor: (3P,5M)-3-{3-[(3,5-dichloropyridin-2-yl)oxy]phenyl}-5-(1H-tetrazol-5-yl)-2,1-benzoxazole, Inositol polyphosphate multikinase Authors: Wang, H, Shears, S.B. Deposit date: 2023-12-04 Release date: 2024-12-11 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Structure-based development of IPMK kinase inhibitors. To Be Published
8V75	Crystal structure of the core catalytic domain of human inositol phosphate multikinase in complex with compound 11 Descriptor: Inositol polyphosphate multikinase, N-{(3P)-3-[(5P)-5-(2H-tetrazol-5-yl)-2,1-benzoxazol-3-yl]phenyl}cyclopropanecarboxamide, SULFATE ION Authors: Wang, H, Shears, S.B. Deposit date: 2023-12-04 Release date: 2024-12-11 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structure-based development of IPMK kinase inhibitors. To Be Published
8RHS	Structure of the ZnF domain from human Roquin-1 Descriptor: Roquin-1 Authors: Schlundt, A, Tants, J.N. Deposit date: 2023-12-16 Release date: 2024-07-03 Last modified: 2024-09-18 Method: SOLUTION NMR Cite: Structure and RNA-binding of the helically extended Roquin CCCH-type zinc finger. Nucleic Acids Res., 52, 2024
8TL9	Human Type 3 IP3 Receptor - Resting State (+IP3/ATP) Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE, ... Authors: Paknejad, N, Sapuru, V, Hite, R.K. Deposit date: 2023-07-26 Release date: 2023-11-08 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural titration reveals Ca 2+ -dependent conformational landscape of the IP 3 receptor. Nat Commun, 14, 2023
8V73	Crystal structure of the core catalytic domain of human inositol phosphate multikinase in complex with compound 9 Descriptor: (5P)-3-(4-phenoxyphenyl)-5-(1H-tetrazol-5-yl)-2,1-benzoxazole, Inositol polyphosphate multikinase Authors: Wang, H, Shears, S.B. Deposit date: 2023-12-04 Release date: 2024-12-11 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure-based development of IPMK kinase inhibitors. To Be Published
8V7P	Crystal structure of the truncated P1 pilin from Pseudomonas aeruginosa Descriptor: CACODYLIC ACID, Fimbrial protein Authors: Bragagnolo, N.J, Audette, G.F. Deposit date: 2023-12-04 Release date: 2024-12-11 Last modified: 2024-12-18 Method: X-RAY DIFFRACTION (1.3 Å) Cite: The 1.3 angstrom resolution structure of the truncated group Ia type IV pilin from Pseudomonas aeruginosa strain P1. Acta Crystallogr D Struct Biol, 80, 2024
7QTB	S1 nuclease from Aspergillus oryzae in complex with cytidine-5'-monophosphate Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... Authors: Adamkova, K, Koval, T, Kolenko, P, Oestergaard, L.H, Dohnalek, J. Deposit date: 2022-01-14 Release date: 2022-11-09 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (1.04 Å) Cite: Atomic resolution studies of S1 nuclease complexes reveal details of RNA interaction with the enzyme despite multiple lattice-translocation defects. Acta Crystallogr D Struct Biol, 78, 2022
8TXN	Adaptive mechanism of collagen IV scaffold assembly in Drosophila: crystal structure of recombinant NC1 hexamer Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Collagen alpha-1(IV) chain, ... Authors: Boudko, S.P. Deposit date: 2023-08-23 Release date: 2023-11-08 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Collagen IV of basement membranes: IV. Adaptive mechanism of collagen IV scaffold assembly in Drosophila. J.Biol.Chem., 299, 2023
8V74	Crystal structure of the core catalytic domain of human inositol phosphate multikinase in complex with compound 10 Descriptor: Inositol polyphosphate multikinase, N-{4-[(5P)-5-(1H-tetrazol-5-yl)-2,1-benzoxazol-3-yl]phenyl}cyclopropanecarboxamide Authors: Wang, H, Shears, S.B. Deposit date: 2023-12-04 Release date: 2024-12-11 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structure-based development of IPMK kinase inhibitors. To Be Published
7QTA	S1 nuclease from Aspergillus oryzae in complex with uridine Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Nuclease S1, ... Authors: Adamkova, K, Koval, T, Kolenko, P, Oestergaard, L.H, Dohnalek, J. Deposit date: 2022-01-14 Release date: 2022-11-09 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.06 Å) Cite: Atomic resolution studies of S1 nuclease complexes reveal details of RNA interaction with the enzyme despite multiple lattice-translocation defects. Acta Crystallogr D Struct Biol, 78, 2022
8V6Y	Crystal structure of the core catalytic domain of human inositol phosphate multikinase in complex with compound 3 Descriptor: 3-(3,5-dimethylphenyl)-2,1-benzoxazole-5-carboxylic acid, Inositol polyphosphate multikinase Authors: Wang, H, Shears, S.B. Deposit date: 2023-12-04 Release date: 2024-12-11 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structure-based development of IPMK kinase inhibitors. To Be Published
8V71	Crystal structure of the core catalytic domain of human inositol phosphate multikinase in complex with compound 7 Descriptor: (5M)-5-(1H-tetrazol-5-yl)-3-[4-(trifluoromethyl)phenyl]-2,1-benzoxazole, Inositol polyphosphate multikinase Authors: Wang, H, Shears, S.B. Deposit date: 2023-12-04 Release date: 2024-12-11 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structure-based development of IPMK kinase inhibitors. To Be Published
7QKN	Crystal structure of YTHDF1 YTH domain in complex with the ebsulfur derivative compound 7 Descriptor: 1,2-ETHANEDIOL, THIOCYANATE ION, YTH domain-containing family protein 1, ... Authors: Dalle Vedove, A, Cazzanelli, G, Quattrone, A, Provenzani, A, Lolli, G. Deposit date: 2021-12-18 Release date: 2022-11-23 Last modified: 2025-10-01 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Small-Molecule Ebselen Binds to YTHDF Proteins Interfering with the Recognition of N 6 -Methyladenosine-Modified RNAs. Acs Pharmacol Transl Sci, 5, 2022
8V70	Crystal structure of the core catalytic domain of human inositol phosphate multikinase in complex with compound 6 Descriptor: (5P)-3-phenyl-5-(1H-tetrazol-5-yl)-2,1-benzoxazole, Inositol polyphosphate multikinase, SULFATE ION Authors: Wang, H, Shears, S.B. Deposit date: 2023-12-04 Release date: 2024-12-11 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structure-based development of IPMK kinase inhibitors. To Be Published
8V77	Crystal structure of the core catalytic domain of human inositol phosphate multikinase in complex with compound 13 Descriptor: (3P,5P)-3-{3-[(piperidin-4-yl)oxy]phenyl}-5-(2H-tetrazol-5-yl)-2,1-benzoxazole, Inositol polyphosphate multikinase Authors: Wang, H, Shears, S.B. Deposit date: 2023-12-04 Release date: 2024-12-11 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structure-based development of IPMK kinase inhibitors. To Be Published
7Q9X	Crystal structure of Chromobacterium violaceum aminotransferase in complex with PLP-pyruvate adduct Descriptor: (3E)-4-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}-2-oxobut-3-enoic acid, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ... Authors: Isupov, M.N, Mitchell, D, Sayer, C, Littlechild, J.A. Deposit date: 2021-11-15 Release date: 2022-11-23 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Aminotransferase from Chromobacterium violaceum in complex with PLP-pyruvate adduct. To Be Published
8V6Z	Crystal structure of the core catalytic domain of human inositol phosphate multikinase in complex with compound 4 Descriptor: (5P)-3-(3,5-dimethylphenyl)-5-(1H-tetrazol-5-yl)-2,1-benzoxazole, Inositol polyphosphate multikinase Authors: Wang, H, Shears, S.B. Deposit date: 2023-12-04 Release date: 2024-12-11 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structure-based development of IPMK kinase inhibitors. To Be Published
7QRC	X-ray structure of Trypanosoma cruzi PEX14 in complex with a PEX5-PEX14 PPI inhibitor Descriptor: GLYCEROL, Peroxin-14, ~{N}-(5-ethyl-6-oxidanylidene-benzo[b][1,4]benzothiazepin-2-yl)-2-(4-fluorophenyl)ethanamide Authors: Napolitano, V, Popowicz, G.M, Dawidowski, M, Dubin, G. Deposit date: 2022-01-10 Release date: 2022-11-23 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.18 Å) Cite: Structure-based design, synthesis and evaluation of a novel family of PEX5-PEX14 interaction inhibitors against Trypanosoma. Eur.J.Med.Chem., 243, 2022
8XWZ	Non-crystalline proximal tubulopathy and crystalline cast nephropathy-causing Bence-Jones protein PT-CN: An entire immunoglobulin kappa light chain dimer Descriptor: 1,2-ETHANEDIOL, 2-ETHOXYETHANOL, Bence-Jones protein kappa light chain PT-CN, ... Authors: Ezawa, T, Otomo, R, Nozawa, K, Kyoya, S, Noguchi, K, Yohda, M, Odaka, M, Matsumura, H. Deposit date: 2024-01-17 Release date: 2025-01-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Multiple myeloma-associated non-crystalline proximal tubulopathy and crystalline cast nephropathy: Biochemical and structural features of disease-causing monoclonal kappa light chains. Faseb J., 39, 2025
8V72	Crystal structure of the core catalytic domain of human inositol phosphate multikinase in complex with compound 8 Descriptor: (5P)-5-(1H-tetrazol-5-yl)-3-[4-(trifluoromethoxy)phenyl]-2,1-benzoxazole, Inositol polyphosphate multikinase, SULFATE ION Authors: Wang, H, Shears, S.B. Deposit date: 2023-12-04 Release date: 2024-12-11 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure-based development of IPMK kinase inhibitors. To Be Published
8V76	Crystal structure of the core catalytic domain of human inositol phosphate multikinase in complex with compound 12 Descriptor: Inositol polyphosphate multikinase, N-{(3P)-3-[(5P)-5-(2H-tetrazol-5-yl)-2,1-benzoxazol-3-yl]phenyl}cyclopentanecarboxamide, SULFATE ION Authors: Wang, H, Shears, S.B. Deposit date: 2023-12-04 Release date: 2024-12-11 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure-based development of IPMK kinase inhibitors. To Be Published
7STR	Crystal Structure of Human Fab S24-1063 in the Complex with the N-teminal Domain of Nucleocapsid Protein from SARS CoV-2 Descriptor: 1,2-ETHANEDIOL, Fab S24-1063, Heavy chain, ... Authors: Kim, Y, Maltseva, N, Tesar, C, Jedrzejczak, R, Dugan, H, Stamper, C, Wilson, P, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2021-11-15 Release date: 2022-08-10 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Epitopes recognition of SARS-CoV-2 nucleocapsid RNA binding domain by human monoclonal antibodies. Iscience, 27, 2024
7Q9Z	Crystal structure of Chromobacterium violaceum aminotransferase in complex with PLP-pyruvate adduct Descriptor: (3E)-4-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}-2-oxobut-3-enoic acid, 1,2-ETHANEDIOL, CHLORIDE ION, ... Authors: Isupov, M.N, Mitchell, D, Sayer, C, Littlechild, J.A. Deposit date: 2021-11-15 Release date: 2022-11-23 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Aminotransferase from Chromobacterium violaceum in complex with PLP-pyruvate adduct. To Be Published

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