Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6HQ7
DownloadVisualize
BU of 6hq7 by Molmil
Structure of EAL Enzyme Bd1971 - cGMP bound form
Descriptor: CYCLIC GUANOSINE MONOPHOSPHATE, EAL Enzyme Bd1971, MAGNESIUM ION
Authors:Lovering, A.L, Cadby, I.T.
Deposit date:2018-09-24
Release date:2019-07-31
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Nucleotide signaling pathway convergence in a cAMP-sensing bacterial c-di-GMP phosphodiesterase.
Embo J., 38, 2019
9R2M
DownloadVisualize
BU of 9r2m by Molmil
p53 bound to nucleosome at position SHL+5.9 (non-crosslinked sample, composite map)
Descriptor: Cellular tumor antigen p53, DNA-for, DNA-rev, ...
Authors:Chakraborty, D, Kater, L, Kempf, G, Cavadini, S, Thoma, N.H.
Deposit date:2025-04-30
Release date:2025-07-02
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:p53 bound to nucleosome at position SHL+5.9 (non-crosslinked sample, composite map)
To Be Published
6F4D
DownloadVisualize
BU of 6f4d by Molmil
Structure of the Y21F variant of quinolinate synthase in complex with PGH
Descriptor: CHLORIDE ION, IRON/SULFUR CLUSTER, PHOSPHATE ION, ...
Authors:Volbeda, A, Fontecilla-Camps, J.C.
Deposit date:2017-11-29
Release date:2018-04-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic Trapping of Reaction Intermediates in Quinolinic Acid Synthesis by NadA.
ACS Chem. Biol., 13, 2018
7BX2
DownloadVisualize
BU of 7bx2 by Molmil
The solution NMR structure of VV14 peptide in the presence of Deuterated SDS micelle.
Descriptor: VAL-LYS-TRP-VAL-LYS-LYS-VAL-VAL-LYS-TRP-VAL-LYS-LYS-VAL
Authors:Bhunia, A, Mohid, S.A, Chowdhury, N.
Deposit date:2020-04-16
Release date:2021-04-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Effect of Secondary Structure and Side Chain Length of Hydrophobic Amino Acid Residues on the Antimicrobial Activity and Toxicity of 14-Residue-Long de novo AMPs.
Chemmedchem, 16, 2021
7S3F
DownloadVisualize
BU of 7s3f by Molmil
Structure of cofactor pyridoxal 5-phosphate bound human ornithine decarboxylase in complex with its inhibitor 1-amino-oxy-3-aminopropane
Descriptor: 3-AMINOOXY-1-AMINOPROPANE, Ornithine decarboxylase, PYRIDOXAL-5'-PHOSPHATE
Authors:Zhou, X.E, Suino-Powell, K, Schultz, C.R, Aleiwi, B, Brunzelle, J.S, Lamp, J, Vega, I.E, Ellsworth, E, Bachmann, A.S, Melcher, K.
Deposit date:2021-09-06
Release date:2021-12-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structural basis of binding and inhibition of ornithine decarboxylase by 1-amino-oxy-3-aminopropane.
Biochem.J., 478, 2021
7S3G
DownloadVisualize
BU of 7s3g by Molmil
Structure of cofactor pyridoxal 5-phosphate bound human ornithine decarboxylase in complex with citrate at the catalytic center
Descriptor: CITRIC ACID, Ornithine decarboxylase, PYRIDOXAL-5'-PHOSPHATE
Authors:Zhou, X.E, Suino-Powell, K, Schultz, C.R, Aleiwi, B, Brunzelle, J.S, Lamp, J, Vega, I.E, Ellsworth, E, Bachmann, A.S, Melcher, K.
Deposit date:2021-09-06
Release date:2021-12-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structural basis of binding and inhibition of ornithine decarboxylase by 1-amino-oxy-3-aminopropane.
Biochem.J., 478, 2021
6G74
DownloadVisualize
BU of 6g74 by Molmil
Structure of the Y21F variant of quinolinate synthase in complex with phthalate
Descriptor: IRON/SULFUR CLUSTER, PHTHALIC ACID, Quinolinate synthase A
Authors:Volbeda, A, Fontecilla-Camps, J.C.
Deposit date:2018-04-04
Release date:2018-04-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic Trapping of Reaction Intermediates in Quinolinic Acid Synthesis by NadA.
ACS Chem. Biol., 13, 2018
9GGR
DownloadVisualize
BU of 9ggr by Molmil
Structure of the HrpA-bound E. coli disome, Class II
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 50S ribosomal protein L11, ...
Authors:Esser, H.F, Berninghausen, O, Becker, T, Beckmann, R.
Deposit date:2024-08-14
Release date:2025-02-12
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The RNA helicase HrpA rescues collided ribosomes in E. coli.
Mol.Cell, 85, 2025
2L52
DownloadVisualize
BU of 2l52 by Molmil
Solution structure of the small archaeal modifier protein 1 (SAMP1) from Methanosarcina acetivorans
Descriptor: METHANOSARCINA ACETIVORANS SAMP1 HOMOLOG
Authors:Damberger, F.F, Ranjan, N, Sutter, M, Allain, F.H.-T, Weber-Ban, E.
Deposit date:2010-10-24
Release date:2011-02-09
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure and activation mechanism of ubiquitin-like small archaeal modifier proteins.
J.Mol.Biol., 405, 2011
9HPC
DownloadVisualize
BU of 9hpc by Molmil
The TMD and the LBD region of the AMPAR complex GluA3- TARP gamma2 in the apo state.
Descriptor: Isoform Flip of Glutamate receptor 3,Voltage-dependent calcium channel gamma-2 subunit
Authors:Pokharna, A, Krieger, J, Greger, I.
Deposit date:2024-12-12
Release date:2025-07-09
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:The NTD dimer and the interfacing LBD region of the AMPAR complex GluA3- TARP gamma2 in the apo state.
To Be Published
9HPE
DownloadVisualize
BU of 9hpe by Molmil
The NTD dimer and the interfacing LBD region of the AMPAR complex GluA3- TARP gamma2 in the apo state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Isoform Flip of Glutamate receptor 3,Voltage-dependent calcium channel gamma-2 subunit
Authors:Pokharna, A, Krieger, J, Greger, I.
Deposit date:2024-12-12
Release date:2025-07-09
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:The NTD dimer and the interfacing LBD region of the AMPAR complex GluA3- TARP gamma2 in the apo state.
To Be Published
5IO2
DownloadVisualize
BU of 5io2 by Molmil
Xanthomonas campestris Peroxiredoxin Q - C48S mutant
Descriptor: Bacterioferritin comigratory protein, PHOSPHATE ION, SODIUM ION
Authors:Perkins, A, Parsonage, D, Nelson, K.J, Poole, L.B, Karplus, A.
Deposit date:2016-03-08
Release date:2016-09-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Peroxiredoxin Catalysis at Atomic Resolution.
Structure, 24, 2016
6GIV
DownloadVisualize
BU of 6giv by Molmil
Structure of GluA2-N775S ligand-binding domain (S1S2J) in complex with glutamate and Rubidium Bromide at 1.75 A resolution
Descriptor: BROMIDE ION, GLUTAMIC ACID, GLYCEROL, ...
Authors:Venskutonyte, R, Frydenvang, K, Kastrup, J.S.
Deposit date:2018-05-15
Release date:2019-05-15
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Nanoscale Mobility of the Apo State and TARP Stoichiometry Dictate the Gating Behavior of Alternatively Spliced AMPA Receptors.
Neuron, 102, 2019
8UNJ
DownloadVisualize
BU of 8unj by Molmil
Atomic model of the human CTF18-RFC alone in the apo state (State 1)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chromosome transmission fidelity protein 18 homolog, MAGNESIUM ION, ...
Authors:Wang, F, He, Q, Li, H.
Deposit date:2023-10-19
Release date:2024-05-08
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Cryo-EM reveals a nearly complete PCNA loading process and unique features of the human alternative clamp loader CTF18-RFC.
Proc.Natl.Acad.Sci.USA, 121, 2024
6U5S
DownloadVisualize
BU of 6u5s by Molmil
NTD of GluA2 in complex with CNIH3 - with antagonist ZK200775 - in pseudo-symmetric global conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glutamate receptor 2, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Nakagawa, T.
Deposit date:2019-08-28
Release date:2019-12-04
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Structures of the AMPA receptor in complex with its auxiliary subunit cornichon.
Science, 366, 2019
6UCB
DownloadVisualize
BU of 6ucb by Molmil
GluA2 in complex with its auxiliary subunit CNIH3 - with antagonist ZK200775, LBD, TMD, CNIH3, and lipids
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CHOLESTEROL, Glutamate receptor 2, ...
Authors:Nakagawa, T.
Deposit date:2019-09-15
Release date:2019-12-04
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Structures of the AMPA receptor in complex with its auxiliary subunit cornichon.
Science, 366, 2019
8FWA
DownloadVisualize
BU of 8fwa by Molmil
Phycocyanin structure from a modular droplet injector for serial femtosecond crystallography
Descriptor: C-phycocyanin alpha chain, C-phycocyanin beta chain, PHYCOCYANOBILIN, ...
Authors:Botha, S, Doppler, D.L, Sonker, M, Egatz-Gomez, A, Grieco, A, Zaare, S, Jernigan, R, Meza-Aguilar, J.D, Rabbani, M.T, Manna, A, Alvarez, R, Karpos, K, Cruz Villarreal, J, Nelson, G, Ketawala, G.K, Pey, A.L, Ruiz-Fresneda, M.A, Pacheco-Garcia, J.L, Nazari, R, Sierra, R, Hunter, M.S, Batyuk, A, Kupitz, C.J, Sublett, R.E, Lisova, S, Mariani, V, Boutet, S, Fromme, R, Grant, T.D, Fromme, P, Kirian, R.A, Martin-Garcia, J.M, Ros, A.
Deposit date:2023-01-20
Release date:2023-06-28
Last modified:2023-07-12
Method:X-RAY DIFFRACTION (2 Å)
Cite:Modular droplet injector for sample conservation providing new structural insight for the conformational heterogeneity in the disease-associated NQO1 enzyme.
Lab Chip, 23, 2023
6UD8
DownloadVisualize
BU of 6ud8 by Molmil
GluA2 in complex with its auxiliary subunit CNIH3 - with antagonist ZK200775
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CHOLESTEROL, Glutamate receptor 2, ...
Authors:Nakagawa, T.
Deposit date:2019-09-18
Release date:2019-12-04
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structures of the AMPA receptor in complex with its auxiliary subunit cornichon.
Science, 366, 2019
9HPD
DownloadVisualize
BU of 9hpd by Molmil
The NTD dimer and the interfacing LBD region of the AMPAR complex GluA3- TARP gamma2 in the open state.
Descriptor: Isoform Flip of Glutamate receptor 3,Isoform Flip of Glutamate receptor 3,Voltage-dependent calcium channel gamma-2 subunit
Authors:Pokharna, A, Krieger, J, Greger, I.
Deposit date:2024-12-12
Release date:2025-07-09
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:The NTD dimer and the interfacing LBD region of the AMPAR complex GluA3- TARP gamma2 in the apo state.
To Be Published
9QFH
DownloadVisualize
BU of 9qfh by Molmil
The composite map of of the AMPAR complex GluA3- TARP gamma2 in the apo state.
Descriptor: Isoform Flip of Glutamate receptor 3,Voltage-dependent calcium channel gamma-2 subunit
Authors:Pokharna, A, Krieger, J, Greger, I.
Deposit date:2025-03-11
Release date:2025-07-09
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:The NTD dimer and the interfacing LBD region of the AMPAR complex GluA3- TARP gamma2 in the apo state.
To Be Published
9HPF
DownloadVisualize
BU of 9hpf by Molmil
The NTD dimer and the interfacing LBD region of the AMPAR complex GluA3- TARP gamma2 in the desensitised state.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Isoform Flip of Glutamate receptor 3,Voltage-dependent calcium channel gamma-2 subunit
Authors:Pokharna, A, Krieger, J, Greger, I.
Deposit date:2024-12-12
Release date:2025-07-09
Method:ELECTRON MICROSCOPY (3.77 Å)
Cite:The NTD dimer and the interfacing LBD region of the AMPAR complex GluA3- TARP gamma2 in the apo state.
To Be Published
6RRL
DownloadVisualize
BU of 6rrl by Molmil
Solution NMR structure of the peptide 3967 from medicinal leech Hirudo medicinalis in dodecylphosphocholine micelles
Descriptor: peptide 3967
Authors:Nadezhdin, K.D, Grafskaia, E.N, Arseniev, A.S, Lazarev, V.N.
Deposit date:2019-05-20
Release date:2019-07-24
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Medicinal leech antimicrobial peptides lacking toxicity represent a promising alternative strategy to combat antibiotic-resistant pathogens.
Eur.J.Med.Chem., 180, 2019
6RSM
DownloadVisualize
BU of 6rsm by Molmil
Solution NMR structure of the peptide 12530 from medicinal leech Hirudo medicinalis in dodecylphosphocholine micelles
Descriptor: peptide 12530
Authors:Talyzina, I.A, Nadezhdin, K.D, Grafskaia, E.N, Arseniev, A.S, Lazarev, V.N.
Deposit date:2019-05-21
Release date:2019-07-24
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Medicinal leech antimicrobial peptides lacking toxicity represent a promising alternative strategy to combat antibiotic-resistant pathogens.
Eur.J.Med.Chem., 180, 2019
5IOX
DownloadVisualize
BU of 5iox by Molmil
Xanthomonas campestris Peroxiredoxin Q - Structure LUss
Descriptor: Bacterioferritin comigratory protein
Authors:Perkins, A, Parsonage, D, Nelson, K.J, Poole, L.B, Karplus, A.
Deposit date:2016-03-09
Release date:2016-09-21
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Peroxiredoxin Catalysis at Atomic Resolution.
Structure, 24, 2016
5IM9
DownloadVisualize
BU of 5im9 by Molmil
Xanthomonas campestris Peroxiredoxin Q - Structure F1
Descriptor: Bacterioferritin comigratory protein, SODIUM ION
Authors:Perkins, A, Parsonage, D, Nelson, K.J, Poole, L.B, Karplus, A.
Deposit date:2016-03-05
Release date:2016-09-21
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Peroxiredoxin Catalysis at Atomic Resolution.
Structure, 24, 2016

238582

數據於2025-07-09公開中

PDB statisticsPDBj update infoContact PDBjnumon