PDB: 5515 resultsInfo pagesStatus searchChemie searchBIRD

---

5DXV	Crystal structure of Rethreaded DHFR Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Faham, S. Deposit date: 2015-09-24 Release date: 2016-06-08 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Protein rethreading: A novel approach to protein design. Sci Rep, 6, 2016
5E61	Structure of amyloid-forming peptide FGAILSS (residues 23-29) from islet amyloid polypeptide Descriptor: FGAILSS (residues 23-29) from islet amyloid polypeptide Authors: Soriaga, A.B, Eisenberg, D. Deposit date: 2015-10-09 Release date: 2015-12-16 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Crystal Structures of IAPP Amyloidogenic Segments Reveal a Novel Packing Motif of Out-of-Register Beta Sheets. J.Phys.Chem.B, 120, 2016
5F53	Nano-ring of cadmium ions coordinated by nvPizza2-S16S58 Descriptor: CADMIUM ION, CHLORIDE ION, NVPIZZA2-S16S58 Authors: Voet, A.R.D, Tame, J.R.H. Deposit date: 2015-12-04 Release date: 2016-12-14 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: A cadmium chloride ring created by a designed symmetrical protein To Be Published
5E5X	Structure of the amyloid forming peptide ANFLVH (residues 13-18) from islet amyloid polypeptide Descriptor: ANFLVH (residues 13-18) from islet amyloid polypeptide Authors: Soriaga, A.B, Eisenberg, D. Deposit date: 2015-10-09 Release date: 2015-12-16 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.61 Å) Cite: Crystal Structures of IAPP Amyloidogenic Segments Reveal a Novel Packing Motif of Out-of-Register Beta Sheets. J.Phys.Chem.B, 120, 2016
5EIL	Computational design of a high-affinity metalloprotein homotrimer containing a metal chelating non-canonical amino acid Descriptor: FE (III) ION, TRI-05 Authors: Sankaran, B, Zwart, P.H, Mills, J.H, Pereira, J.H, Baker, D. Deposit date: 2015-10-30 Release date: 2016-11-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Computational design of a homotrimeric metalloprotein with a trisbipyridyl core. Proc. Natl. Acad. Sci. U.S.A., 113, 2016
2N6B	NMR structure of the de-novo toxin Hui1 Descriptor: Hui1 Authors: Mendelman, N, Zhao, R, Goldstein, S.A.N, Chill, J.H. Deposit date: 2015-08-17 Release date: 2015-12-16 Last modified: 2015-12-30 Method: SOLUTION NMR Cite: Designer and natural peptide toxin blockers of the KcsA potassium channel identified by phage display. Proc.Natl.Acad.Sci.USA, 112, 2015
5E5V	Structure of amyloid forming peptide NFGAILS (residues 22-28) from Islet Amyloid Polypeptide Descriptor: NFGAILS (22-28) from islet amyloid polypeptide, synthesized Authors: Soriaga, A.B, Macdonald, R, Sawaya, M.R, Sangwan, S, Eisenberg, D. Deposit date: 2015-10-09 Release date: 2015-12-16 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.24 Å) Cite: Crystal Structures of IAPP Amyloidogenic Segments Reveal a Novel Packing Motif of Out-of-Register Beta Sheets. J.Phys.Chem.B, 120, 2016
5E5Z	Structure of the amyloid forming peptide LVHSSN (residues Descriptor: LVHSSN (residues 16-21) from islet amyloid polypeptide Authors: Soriaga, A.B, Eisenberg, D. Deposit date: 2015-10-09 Release date: 2015-12-16 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.664 Å) Cite: Crystal Structures of IAPP Amyloidogenic Segments Reveal a Novel Packing Motif of Out-of-Register Beta Sheets. J.Phys.Chem.B, 120, 2016
1U7M	Solution structure of a diiron protein model: Due Ferri(II) turn mutant Descriptor: Four-helix bundle model, ZINC ION Authors: Maglio, O, Nastri, F, Calhoun, J.R, Lahr, S, Pavone, V, DeGrado, W.F, Lombardi, A. Deposit date: 2004-08-04 Release date: 2005-03-01 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Analysis and Design of Turns in alpha-Helical Hairpins J.Mol.Biol., 346, 2005
1UAO	NMR Structure of designed protein, Chignolin, consisting of only ten amino acids (Ensembles) Descriptor: Chignolin Authors: Honda, S, Yamasaki, K. Deposit date: 2003-03-13 Release date: 2004-04-13 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: 10 residue folded peptide designed by segment statistics Structure, 12, 2004
1U7J	Solution structure of a diiron protein model Descriptor: Four-helix bundle model, ZINC ION Authors: Maglio, O, Nastri, F, Calhoun, J.R, Lahr, S, Pavone, V, DeGrado, W.F, Lombardi, A. Deposit date: 2004-08-04 Release date: 2005-03-01 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Analysis and Design of Turns in alpha-Helical Hairpins J.Mol.Biol., 346, 2005
8A52	Crystal structure of a chimeric LOV-Histidine kinase SB2F1 (asymmetrical variant, trigonal form with long c-axis) Descriptor: ADENOSINE-5'-TRIPHOSPHATE, FLAVIN MONONUCLEOTIDE, Putative Sensory box protein,Putative Sensory box protein,Sensor protein FixL Authors: Batra-Safferling, R, Arinkin, V, Granzin, J. Deposit date: 2022-06-14 Release date: 2023-12-27 Method: X-RAY DIFFRACTION (2.461 Å) Cite: Crystal structure of a chimeric LOV-Histidine kinase SB2F1 (asymmetrical variant, trigonal form with long c axis) To Be Published
8A6X	Crystal structure of a chimeric LOV-Histidine kinase SB2F1 (asymmetrical variant, trigonal form with long c axis) Descriptor: ADENOSINE-5'-TRIPHOSPHATE, FLAVIN MONONUCLEOTIDE, Putative Sensory box protein,Sensor protein FixL Authors: Arinkin, V, Granzin, J, Batra-Safferling, R. Deposit date: 2022-06-20 Release date: 2024-01-10 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Crystal structure of a chimeric LOV-Histidine kinase SB2F1 (asymmetrical variant, trigonal form with long c axis) To Be Published
4J4A	Crystal Structure of Engineered Trimeric Cortexillin-1 Coiled-Coil Variant Descriptor: Cortexillin-1, PHOSPHATE ION Authors: Bjelic, S, Steinmetz, M.O, Kammerer, R.A. Deposit date: 2013-02-06 Release date: 2013-05-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.6499 Å) Cite: Structural basis for the oligomerization-state switch from a dimer to a trimer of an engineered cortexillin-1 coiled-coil variant. Plos One, 8, 2013
2P09	Structural Insights into the Evolution of a Non-Biological Protein Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, PENTAETHYLENE GLYCOL, ... Authors: Smith, M, Rosenow, M, Wang, M, Allen, J.P, Szostak, J.W, Chaput, J.C. Deposit date: 2007-02-28 Release date: 2007-06-05 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structural insights into the evolution of a non-biological protein: importance of surface residues in protein fold optimization. PLoS ONE, 2, 2007
2QYJ	Crystal structure of a designed full consensus ankyrin Descriptor: SULFATE ION, ankyrin NI3C Authors: Merz, T. Deposit date: 2007-08-15 Release date: 2007-11-13 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Stabilizing ionic interactions in a full-consensus ankyrin repeat protein. J.Mol.Biol., 376, 2008
4D9J	Structure of a 16 nm protein cage designed by fusing symmetric oligomeric domains Descriptor: Designed 16nm tetrahedral protein cage containing Non-haem bromoperoxidase BPO-A2 and Matrix protein 1 Authors: Lai, Y.-T, Cascio, D, Yeates, T.O. Deposit date: 2012-01-11 Release date: 2012-06-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.92 Å) Cite: Structure of a 16-nm cage designed by using protein oligomers. Science, 336, 2012
2XEN	Structural Determinants for Improved Thermal Stability of Designed Ankyrin Repeat Proteins With a Redesigned C-capping Module. Descriptor: 1,2-ETHANEDIOL, METHANOL, NI1C MUT4, ... Authors: Kramer, M, Wetzel, S.K, Pluckthun, A, Mittl, P, Grutter, M. Deposit date: 2010-05-17 Release date: 2010-08-18 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural Determinants for Improved Thermal Stability of Designed Ankyrin Repeat Proteins with a Redesigned C-Capping Module. J.Mol.Biol., 404, 2010
6NEK	Crystal structure of a consensus PDZ domain Descriptor: 1,2-ETHANEDIOL, Consensus PDZ domain Authors: Sun, Y.J, Gakhar, L, Fuentes, E.J. Deposit date: 2018-12-17 Release date: 2019-12-25 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Consensus PDZ domain To be published
6NL6	Crystal structure of mutant B1 immunoglobulin-binding domain of Streptococcal Protein G (T16F, T18A, V21E, T25L, K28Y, V29I, K31R, Q32H, Y33L, N35K, D36H, N37Q) Descriptor: CHLORIDE ION, Immunoglobulin G-binding protein G, ZINC ION Authors: Huxford, T, Stec, B, Maniaci, B. Deposit date: 2019-01-08 Release date: 2019-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Design of High-Affinity Metal-Controlled Protein Dimers. Biochemistry, 58, 2019
1ZSZ	Crystal structure of a computationally designed SspB heterodimer Descriptor: MAGNESIUM ION, Stringent starvation protein B homolog Authors: Bolon, D.N, Grant, R.A, Baker, T.A, Sauer, R.T. Deposit date: 2005-05-25 Release date: 2005-08-23 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2 Å) Cite: Specificity versus stability in computational protein design. Proc.Natl.Acad.Sci.Usa, 102, 2005
6NJF	Solution NMR Structure of DANCER3-F34A, a rigid and natively folded single mutant of the dynamic protein DANCER-3 Descriptor: Immunoglobulin G-binding protein G Authors: Damry, A.M, Mayer, M.M, Goto, N.K, Chica, R.A. Deposit date: 2019-01-03 Release date: 2019-08-21 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Origin of conformational dynamics in a globular protein. Commun Biol, 2, 2019
2AVP	Crystal structure of an 8 repeat consensus TPR superhelix Descriptor: CADMIUM ION, synthetic consensus TPR protein Authors: Kajander, T, Cortajarena, A.L, Main, E.R, Mochrie, S, Regan, L. Deposit date: 2005-08-30 Release date: 2005-09-13 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Structure and stability of designed TPR protein superhelices: unusual crystal packing and implications for natural TPR proteins. Acta Crystallogr.,Sect.D, 63, 2007
1YOD	Crystal structure of a water soluble analog of phospholamban Descriptor: water-solublized phospholamban Authors: Slovic, A.M, Stayrook, S.E, North, B, DeGrado, W.F. Deposit date: 2005-01-27 Release date: 2005-04-19 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: X-ray structure of a water-soluble analog of the membrane protein phospholamban: sequence determinants defining the topology of tetrameric and pentameric coiled coils. J.Mol.Biol., 348, 2005
1Y47	Structural studies of designed alpha-helical hairpins Descriptor: CADMIUM ION, dueferri (DF2) Authors: Lahr, S.J, Engel, D.E, Stayrook, S.E, Maglio, O, North, B, Geremia, S, Lombardi, A, DeGrado, W.F. Deposit date: 2004-11-30 Release date: 2005-03-22 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Analysis and design of turns in alpha-helical hairpins J.Mol.Biol., 346, 2005

<120121122123124125126127128129130131132133134135>