PDB: 2121 resultsInfo pagesStatus searchChemie searchBIRD

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2ZO7	Crystal Structure of a Kusabira-Cyan Mutant (KCY-R1), a Cyan/Green-Emitting GFP-Like Protein Descriptor: CYAN/GREEN-EMITTING GFP-LIKE PROTEIN, KUSABIRA-CYAN MUTANT (KCY-R1) Authors: Kikuchi, A, Fukumura, E, Karasawa, S, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2008-05-06 Release date: 2009-05-12 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.58 Å) Cite: Crystal structure of a new cyan fluorescent protein and its hue-shifted variants Biochemistry, 48, 2009
6FPA	Crystal structure of anti-mTFP1 DARPin 1238_G01 in space group P212121 Descriptor: DARPin 1238_G01 Authors: Jakob, R.P, Vigano, M.A, Bieli, D, Matsuda, S, Schaefer, J.V, Pluckthun, A, Affolter, M, Maier, T. Deposit date: 2018-02-09 Release date: 2018-10-03 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.58 Å) Cite: DARPins recognizing mTFP1 as novel reagents forin vitroandin vivoprotein manipulations. Biol Open, 7, 2018
1Q4D	S65T Q80R T203C Green Fluorescent Protein (GFP) pH 5.5 Descriptor: Green Fluorescent Protein Authors: Jain, R.K, Ranganathan, R. Deposit date: 2003-08-02 Release date: 2004-02-03 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.58 Å) Cite: Local complexity of amino acid interactions in a protein core. Proc.Natl.Acad.Sci.USA, 101, 2004
3DL0	Crystal structure of adenylate kinase variant AKlse3 Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ... Authors: Bannen, R.M, Bianchetti, C.M, Bingman, C.A, McCoy, J.G. Deposit date: 2008-06-26 Release date: 2009-06-09 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.58 Å) Cite: Effectiveness and limitations of local structural entropy optimization in the thermal stabilization of mesophilic and thermophilic adenylate kinases. Proteins, 82, 2014
3WYE	Crystal Structure of chimeric engineered (2S,3S)-butanediol dehydrogenase complexed with NAD+ Descriptor: Diacetyl reductase [(S)-acetoin forming],L-2,3-butanediol dehydrogenase,Diacetyl reductase [(S)-acetoin forming],L-2,3-butanediol dehydrogenase,Diacetyl reductase [(S)-acetoin forming],L-2,3-butanediol dehydrogenase,Diacetyl reductase [(S)-acetoin forming], NICOTINAMIDE-ADENINE-DINUCLEOTIDE Authors: Shimegi, T, Oyama, T, Kusunoki, M, Ui, S. Deposit date: 2014-08-26 Release date: 2015-08-26 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.58 Å) Cite: Crystal Structure of chimeric engineered (2S,3S)-butanediol dehydrogenase complexed with NAD+ To be Published
2QLE	GFP/S205V mutant Descriptor: Green fluorescent protein, IMIDAZOLE Authors: Shu, X, Remington, S.J. Deposit date: 2007-07-12 Release date: 2008-02-12 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.59 Å) Cite: An alternative excited-state proton transfer pathway in green fluorescent protein variant S205V. Protein Sci., 16, 2007
2VAD	Monomeric red fluorescent protein, DsRed.M1 Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, RED FLUORESCENT PROTEIN, ... Authors: Strongin, D.E, Bevis, B, Khuong, N, Downing, M.E, Strack, R.L, Sundaram, K, Glick, B.S, Keenan, R.J. Deposit date: 2007-08-30 Release date: 2007-11-06 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Structural Rearrangements Near the Chromophore Influence the Maturation Speed and Brightness of Dsred Variants. Protein Eng.Des.Sel., 20, 2007
2YDZ	X-ray structure of the cyan fluorescent protein SCFP3A (K206A mutant) Descriptor: GREEN FLUORESCENT PROTEIN Authors: von Stetten, D, Goedhart, J, Noirclerc-Savoye, M, Lelimousin, M, Joosen, L, Hink, M.A, van Weeren, L, Gadella, T.W.J, Royant, A. Deposit date: 2011-03-25 Release date: 2012-03-21 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Structure-Guided Evolution of Cyan Fluorescent Proteins Towards a Quantum Yield of 93% Nat.Commun, 3, 2012
3DPW	Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 1: Structure 1 in a Series of 26 High Pressure Structures Descriptor: Green fluorescent protein Authors: Barstow, B, Kim, C.U. Deposit date: 2008-07-09 Release date: 2008-09-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift. Proc.Natl.Acad.Sci.Usa, 105, 2008
5CIY	Structural basis of the recognition of H3K36me3 by DNMT3B PWWP domain Descriptor: DNA (5'-D(P*CP*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3'), DNA (5'-D(P*GP*TP*CP*AP*GP*(3DR)P*GP*CP*AP*TP*GP*G)-3'), Modification methylase HhaI, ... Authors: Rondelet, G, DAL MASO, T, Willems, L, Wouters, J. Deposit date: 2015-07-13 Release date: 2016-03-30 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.594 Å) Cite: Structural basis for recognition of histone H3K36me3 nucleosome by human de novo DNA methyltransferases 3A and 3B. J.Struct.Biol., 194, 2016
4CF7	Crystal structure of adenylate kinase from Aquifex aeolicus with MgADP bound Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ADENYLATE KINASE, ... Authors: Kerns, S.J, Agafonov, R.V, Cho, Y.-J, Pontiggia, F, Otten, R, Pachov, D.V, Kutter, S, Phung, L.A, Murphy, P.N, Thai, V, Hagan, M.F, Kern, D. Deposit date: 2013-11-13 Release date: 2014-12-03 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.594 Å) Cite: The Energy Landscape of Adenylate Kinase During Catalysis. Nat.Struct.Mol.Biol., 22, 2015
6DQ1	sfGFP N149 mutated to 4-nitro-L-phenylalanine Descriptor: SODIUM ION, sfGFP Authors: Phillips-Piro, C.M, Savidge, N, Lee, B. Deposit date: 2018-06-10 Release date: 2018-10-17 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.598 Å) Cite: Crystal structures of green fluorescent protein with the unnatural amino acid 4-nitro-L-phenylalanine. Acta Crystallogr F Struct Biol Commun, 74, 2018
6OG8	Crystal structure of Green Fluorescent Protein (GFP); S65T, H148D with globally incorporated 3-F1Y; circular permutant (50-51) Descriptor: Crystal structure of Green Fluorescent Protein (GFP); S65T, H148D with globally incorporated 3-F1Y; circular permutant (50-51) Authors: Lin, C.-Y, Deng, A, Boxer, S.G. Deposit date: 2019-04-01 Release date: 2020-04-08 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.599 Å) Cite: Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems. J.Phys.Chem.B, 124, 2020
2G6Y	Crystal structure of the novel green fluorescent protein from marine copepod Pontellina plumata Descriptor: green fluorescent protein 2 Authors: Evdokimov, A.G, Pokross, M.E, Chudakov, D.M. Deposit date: 2006-02-26 Release date: 2006-03-28 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural basis for the fast maturation of Arthropoda green fluorescent protein. Embo Rep., 7, 2006
5AZB	Crystal structure of Escherichia coli Lgt in complex with phosphatidylglycerol and the inhibitor palmitic acid Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, PALMITIC ACID, Prolipoprotein diacylglyceryl transferase, ... Authors: Zhang, X.C, Mao, G, Zhao, Y. Deposit date: 2015-09-30 Release date: 2016-01-27 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of E. coli lipoprotein diacylglyceryl transferase Nat Commun, 7, 2016
7A8O	rsGreen0.7-K206A-N205S in the green-on state Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein Authors: De Zitter, E, Dedecker, P, Van Meervelt, L. Deposit date: 2020-08-30 Release date: 2021-02-17 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*. Angew.Chem.Int.Ed.Engl., 60, 2021
7A8M	rsGreen0.7-K206A-N205G in the green-on state Descriptor: Green fluorescent protein Authors: De Zitter, E, Dedecker, P, Van Meervelt, L. Deposit date: 2020-08-30 Release date: 2021-02-17 Last modified: 2021-05-05 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*. Angew.Chem.Int.Ed.Engl., 60, 2021
7A7M	rsGreen0.7b in the green-on state Descriptor: Green fluorescent protein Authors: De Zitter, E, Dedecker, P, Van Meervelt, L. Deposit date: 2020-08-30 Release date: 2021-02-17 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*. Angew.Chem.Int.Ed.Engl., 60, 2021
4DXI	Crystal Structure of an Ancestor of All Faviina Proteins Descriptor: GREEN FLUORESCENT PROTEIN, MAGNESIUM ION Authors: Kim, H, Wachter, R.M. Deposit date: 2012-02-27 Release date: 2013-02-27 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.6 Å) Cite: A hinge migration mechanism unlocks the evolution of green-to-red photoconversion in GFP-like proteins. Structure, 23, 2015
6S36	Crystal structure of E. coli Adenylate kinase R119K mutant Descriptor: Adenylate kinase, CHLORIDE ION, MAGNESIUM ION, ... Authors: Grundstrom, C, Rogne, P, Wolf-Watz, M, Sauer-Eriksson, A.E. Deposit date: 2019-06-24 Release date: 2019-08-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Nucleation of an Activating Conformational Change by a Cation-pi Interaction. Biochemistry, 58, 2019
4LQU	1.60A resolution crystal structure of a superfolder green fluorescent protein (W57G) mutant Descriptor: Green fluorescent protein Authors: Lovell, S, Xia, Y, Vo, B, Battaile, K.P, Egan, C, Karanicolas, J. Deposit date: 2013-07-19 Release date: 2013-12-18 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: The designability of protein switches by chemical rescue of structure: mechanisms of inactivation and reactivation. J.Am.Chem.Soc., 135, 2013
7Z7Q	Structure of the T207D single-point mutant of the fluorescent protein NeonCyan1 at pH 6.5 Descriptor: NeonCyan1 Authors: Duarte, K, Dupuy, J, Royant, A. Deposit date: 2022-03-16 Release date: 2022-05-04 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Cyan fluorescent proteins derived from mNeonGreen. Protein Eng.Des.Sel., 35, 2022
7SAH	Crystal Structure of LaG16 Nanobody bound to eGFP Descriptor: Green fluorescent protein, LaG16 Authors: Cong, A.T.Q, Schellenberg, M.J. Deposit date: 2021-09-22 Release date: 2022-09-14 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.6 Å) Cite: High-efficiency recombinant protein purification using mCherry and YFP nanobody affinity matrices. Protein Sci., 31, 2022
5Y00	Acid-tolerant monomeric GFP, Gamillus, fluorescence (ON) state Descriptor: CHLORIDE ION, GLYCEROL, Green fluorescent protein, ... Authors: Nakashima, R, Sakurai, K, Shinoda, H, Matsuda, T, Nagai, T. Deposit date: 2017-07-14 Release date: 2018-01-17 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Acid-Tolerant Monomeric GFP from Olindias formosa. Cell Chem Biol, 25, 2018
2HGD	Structure of S65A Y66F GFP variant with an oxidized chromophore Descriptor: Green fluorescent protein Authors: Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D. Deposit date: 2006-06-26 Release date: 2007-03-27 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.6 Å) Cite: The Case of the Missing Ring: Radical Cleavage of a Carbon-Carbon Bond and Implications for GFP Chromophore Biosynthesis J.Am.Chem.Soc., 129, 2007

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