PDB: 222415 resultsInfo pagesStatus searchChemie searchBIRD

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1VQ7	The structure of the transition state analogue "DCA" bound to the large ribosomal subunit of haloarcula marismortui Descriptor: 23S ribosomal rna, 5'-R(*CP*CP*(5AA)P*(2OP)P*(PAE)P*AP*C*C)-3'), 50S RIBOSOMAL PROTEIN L10E, ... Authors: Schmeing, T.M, Steitz, T.A. Deposit date: 2004-12-16 Release date: 2005-11-29 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: An induced-fit mechanism to promote peptide bond formation and exclude hydrolysis of peptidyl-tRNA. Nature, 438, 2005
4NZK	Crystal structure of a DHHW family protein (EUBSIR_00411) from Eubacterium siraeum DSM 15702 at 1.49 A resolution Descriptor: 1,2-ETHANEDIOL, UNKNOWN LIGAND, Uncharacterized protein Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2013-12-12 Release date: 2014-01-15 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.49 Å) Cite: Crystal structure of a hypothetical protein (EUBSIR_00411) from Eubacterium siraeum DSM 15702 at 1.49 A resolution To be published
4NZS	Crystal structure of beta-ketothiolase BktB B from Ralstonia eutropha H16 Descriptor: Beta-ketothiolase BktB Authors: Kim, E.J, Son, H, Kim, S, Kim, K.J. Deposit date: 2013-12-12 Release date: 2014-11-19 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.29 Å) Cite: Crystal structure and biochemical characterization of beta-keto thiolase B from polyhydroxyalkanoate-producing bacterium Ralstonia eutropha H16 Biochem.Biophys.Res.Commun., 444, 2014
8YEY	TRIP4 ASCH domain in complex with ssDNA-1 Descriptor: Activating signal cointegrator 1, DNA (5'-D(*GP*TP*TP*TP*C)-3') Authors: Ding, J, Yang, H, Hu, C. Deposit date: 2024-02-23 Release date: 2024-06-26 Method: X-RAY DIFFRACTION (2 Å) Cite: Biochemical and structural characterization of the DNA-binding properties of human TRIP4 ASCH domain reveals insights into its functional role. Structure, 2024
8ZR5	Cryo-EM Structure of GPR119-Gs-Firuglipel complex Descriptor: 4-[5-[(1~{R})-1-(4-cyclopropylcarbonylphenoxy)propyl]-1,2,4-oxadiazol-3-yl]-2-fluoranyl-~{N}-[(2~{R})-1-oxidanylpropan-2-yl]benzamide, Glucose-dependent insulinotropic receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... Authors: Wong, T.S, Zeng, Z.C, Xiong, T.T, Gan, S.Y, Qiu, C, Du, Y. Deposit date: 2024-06-04 Release date: 2024-06-19 Method: ELECTRON MICROSCOPY (3.31 Å) Cite: Cryo-EM structure of GPR119-Gs complex To Be Published
8YZK	Orphan receptor GPRC5D in complex with scFv150-18 Descriptor: Soluble cytochrome b562,G-protein coupled receptor family C group 5 member D, scFv Authors: Yan, P, Lin, X, Xu, F. Deposit date: 2024-04-07 Release date: 2024-07-03 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: The binding mechanism of an anti-multiple myeloma antibody to the human GPRC5D homodimer. Nat Commun, 15, 2024
8Z8X	Cryo-EM structure of Thogoto virus polymerase in a transcription initiation conformation Descriptor: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, Polymerase acidic protein, Polymerase basic protein 2, ... Authors: Xue, L, Chang, T, Li, Z, Zhao, H, Li, M, He, J, Chen, X, Xiong, X. Deposit date: 2024-04-22 Release date: 2024-05-29 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.06 Å) Cite: Cryo-EM structures of Thogoto virus polymerase reveal unique RNA transcription and replication mechanisms among orthomyxoviruses. Nat Commun, 15, 2024
9EXW	Crystal structure of the PWWP1 domain of NSD2 bound by compound 17. Descriptor: 1,2-ETHANEDIOL, 7-[3-methyl-5-[2-methyl-5-[(pyridin-3-ylamino)methyl]phenyl]imidazol-4-yl]-4~{H}-1,4-benzoxazin-3-one, Histone-lysine N-methyltransferase NSD2 Authors: Collie, G.W. Deposit date: 2024-04-09 Release date: 2024-05-29 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Identification of Novel Potent NSD2-PWWP1 Ligands Using Structure-Based Design and Computational Approaches. J.Med.Chem., 67, 2024
5VJK	Crystal structure of H7 hemagglutinin mutant (V186K, K193T, G228S) from the influenza virus A/Shanghai/2/2013 (H7N9) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1, Hemagglutinin HA2, ... Authors: Zhu, X, Wilson, I.A. Deposit date: 2017-04-19 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.593 Å) Cite: Three mutations switch H7N9 influenza to human-type receptor specificity. PLoS Pathog., 13, 2017
9FFH	Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry Descriptor: Major capsid protein Authors: Bardy, P, MacDonald, C.I.W, Jenkins, H.T, Chechik, M, Hart, S.J, Turkenburg, J.P, Blaza, J.N, Fogg, P.C.M, Antson, A.A. Deposit date: 2024-05-23 Release date: 2024-06-12 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: A stargate mechanism of Microviridae genome delivery unveiled by cryogenic electron tomography. Biorxiv, 2024
5VMF	Influenza hemagglutinin H1 mutant DH1D in complex with 6'SLN Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1, ... Authors: Ni, F, Kondrashkina, E, Wang, Q. Deposit date: 2017-04-27 Release date: 2017-11-08 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Determinant of receptor-preference switch in influenza hemagglutinin. Virology, 513, 2017
4NVH	Predicting protein conformational response in prospective ligand discovery Descriptor: 3-nitroquinolin-4-amine, Cytochrome c peroxidase, PROTOPORPHYRIN IX CONTAINING FE Authors: Fischer, M, Fraser, J.S. Deposit date: 2013-12-05 Release date: 2013-12-18 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.24 Å) Cite: Incorporation of protein flexibility and conformational energy penalties in docking screens to improve ligand discovery. Nat Chem, 6, 2014
4UWD	HIF prolyl hydroxylase 2 (PHD2/ EGLN1) D315E VARIANT in complex with Mn(II) and N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9) Descriptor: EGL NINE HOMOLOG 1, MANGANESE (II) ION, N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE Authors: Chowdhury, R, Tarhonskaya, H, Schofield, C.J. Deposit date: 2014-08-11 Release date: 2014-08-27 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.721 Å) Cite: Investigating the Contribution of the Active Site Environment to the Slow Reaction of Hypoxia-Inducible Factor Prolyl Hydroxylase Domain 2 with Oxygen. Biochem.J., 463, 2014
9B5P	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 1 map and model (ATP/Mg) Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Method: ELECTRON MICROSCOPY (3.08 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
3HBZ	Crystal structure of a putative glycoside hydrolase (bt_2081) from bacteroides thetaiotaomicron vpi-5482 at 2.05 A resolution Descriptor: ACETATE ION, CACODYLATE ION, CALCIUM ION, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2009-05-05 Release date: 2009-05-26 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structure of Bacteroides thetaiotaomicron BT2081 at 2.05 A resolution: the first structural representative of a new protein family that may play a role in carbohydrate metabolism. Acta Crystallogr.,Sect.F, 66, 2010
1VQ5	The structure of the transition state analogue "RAA" bound to the large ribosomal subunit of haloarcula marismortui Descriptor: 23S ribosomal rna, 5'-D(*(DC)P*(DC)P*(5AA)P*(2OP)P*(PO2)P*AP*C*C)-3'), 50S RIBOSOMAL PROTEIN L10E, ... Authors: Schmeing, T.M, Steitz, T.A. Deposit date: 2004-12-16 Release date: 2005-11-29 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural Insights into the Roles of Water and the 2' Hydroxyl of the P Site tRNA in the Peptidyl Transferase Reaction. Mol.Cell, 20, 2005
4USW	Crystal structure of human soluble Adenylyl Cyclase with ATP Descriptor: ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, ADENYLATE CYCLASE TYPE 10, ... Authors: Kleinboelting, S, Steegborn, C. Deposit date: 2014-07-13 Release date: 2014-07-30 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structural Analysis of Human Soluble Adenylyl Cyclase and Crystal Structures of its Nucleotide Complexes -Implications for Cyclase Catalysis and Evolution. FEBS J., 281, 2014
3H3H	Crystal structure of a snoal-like protein of unknown function (bth_ii0226) from burkholderia thailandensis e264 at 1.60 A resolution Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, UNKNOWN LIGAND, uncharacterized SnoaL-like protein Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2009-04-16 Release date: 2009-05-05 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of SnoaL-like protein of unknown function (YP_438428.1) from Burkholderia thailandensis E264 at 1.60 A resolution To be published
9B5W	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 1 map and model from cluster 5 (ATP/Mg) Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Method: ELECTRON MICROSCOPY (3.96 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
3HCH	Structure of the C-terminal domain (MsrB) of Neisseria meningitidis PilB (complex with substrate) Descriptor: (2S)-2-(acetylamino)-N-methyl-4-[(R)-methylsulfinyl]butanamide, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CITRIC ACID, ... Authors: Ranaivoson, F.M, Kauffmann, B, Favier, F. Deposit date: 2009-05-06 Release date: 2009-10-13 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Methionine sulfoxide reductase B displays a high level of flexibility. J.Mol.Biol., 394, 2009
2XN8	X-RAY STRUCTURE OF THE SUBSTRATE-FREE MYCOBACTERIUM TUBERCULOSIS CYTOCHROME P450 CYP125 Descriptor: PROTOPORPHYRIN IX CONTAINING FE, PUTATIVE CYTOCHROME P450 125, SULFATE ION Authors: Ouellet, H, Kells, P.M, Ortiz de Montellano, P.R, Podust, L.M. Deposit date: 2010-07-30 Release date: 2010-11-10 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.64 Å) Cite: Reverse Type I Inhibitor of Mycobacteriumtuberculosis Cyp125A1. Bioorg.Med.Chem.Lett., 21, 2011
9B5T	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 5 map and model (ATP/Mg) Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Method: ELECTRON MICROSCOPY (3.16 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
5CQM	GTB mutant with mercury - E303C Descriptor: Histo-blood group ABO system transferase, MERCURY (II) ION Authors: Gagnon, S.M.L, Blackler, R.J. Deposit date: 2015-07-22 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Glycosyltransfer in mutants of putative catalytic residue Glu303 of the human ABO(H) A and B blood group glycosyltransferases GTA and GTB proceeds through a labile active site. Glycobiology, 27, 2017
4NWM	Crystal structure of Bruton agammaglobulinemia tyrosine kinase complexed with BMS-809959 aka 4-tert-butyl-n-[2-me thyl-3-(6-{[4-(morpholine-4-carbonyl)phenyl]amino}-9h- purin-2-yl)phenyl]benzamide Descriptor: 4-tert-butyl-N-[2-methyl-3-(6-{[4-(morpholin-4-ylcarbonyl)phenyl]amino}-7H-purin-2-yl)phenyl]benzamide, Tyrosine-protein kinase BTK Authors: Muckelbauer, J.K. Deposit date: 2013-12-06 Release date: 2014-04-02 Last modified: 2017-11-22 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Purine derivatives as potent Bruton's tyrosine kinase (BTK) inhibitors for autoimmune diseases. Bioorg.Med.Chem.Lett., 24, 2014
4NWX	Crystal structure of phosphoglycerate mutase from Staphylococcus aureus in 2-phosphoglyceric acid bound form Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, 2-PHOSPHOGLYCERIC ACID, ... Authors: Roychowdhury, A, Kundu, A, Bose, M, Gujar, A, Das, A.K. Deposit date: 2013-12-07 Release date: 2015-01-14 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Complete catalytic cycle of cofactor-independent phosphoglycerate mutase involves a spring-loaded mechanism Febs J., 282, 2015

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