2PZ0
 
 | | Crystal structure of Glycerophosphodiester Phosphodiesterase (GDPD) from T. tengcongensis | | Descriptor: | CALCIUM ION, GLYCEROL, Glycerophosphoryl diester phosphodiesterase | | Authors: | Shi, L, Liu, J.F, An, X.M, Liang, D.C. | | Deposit date: | 2007-05-17 | | Release date: | 2008-04-01 | | Last modified: | 2024-11-20 | | Method: | X-RAY DIFFRACTION (1.91 Å) | | Cite: | Crystal structure of glycerophosphodiester phosphodiesterase (GDPD) from Thermoanaerobacter tengcongensis, a metal ion-dependent enzyme: insight into the catalytic mechanism.
Proteins, 72, 2008
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1ZCC
 | | Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens str.C58 | | Descriptor: | ACETATE ION, SULFATE ION, glycerophosphodiester phosphodiesterase | | Authors: | Krishnamurthy, N.R, Kumaran, D, Swaminathan, S, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) | | Deposit date: | 2005-04-11 | | Release date: | 2005-05-03 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens by SAD with a large asymmetric unit.
Proteins, 65, 2006
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4R7O
 | | Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterasefrom Bacillus anthraci | | Descriptor: | 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... | | Authors: | Kim, Y, Zhou, M, Shatsman, S, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) | | Deposit date: | 2014-08-28 | | Release date: | 2014-09-10 | | Last modified: | 2023-09-20 | | Method: | X-RAY DIFFRACTION (2.534 Å) | | Cite: | Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterasefrom Bacillus anthraci
To be Published
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1T8Q
 | | Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli | | Descriptor: | GLYCEROL, Glycerophosphoryl diester phosphodiesterase, periplasmic, ... | | Authors: | Zhang, R, Kim, Y, Dementieva, I, Duke, N, Stols, L, Donnelly, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) | | Deposit date: | 2004-05-13 | | Release date: | 2004-08-03 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | The crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli
To be Published
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8CWP
 | | X-ray crystal structure of NTHi Protein D bound to a putative glycerol moiety | | Descriptor: | GLYCEROL, Glycerophosphoryl diester phosphodiesterase, SODIUM ION | | Authors: | Jones, S.P, Cook, K.H, Holmquist, M.L, Almekinder, L, DeLaney, A, Labbe, N, Perdue, J, Jackson, N, Charles, R, Pichichero, M, Kaur, R, Michel, L, Gleghorn, M.L. | | Deposit date: | 2022-05-19 | | Release date: | 2022-09-28 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Vaccine target and carrier molecule nontypeable Haemophilus influenzae protein D dimerizes like the close Escherichia coli GlpQ homolog but unlike other known homolog dimers.
Proteins, 91, 2023
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1O1Z
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5VUG
 | | Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase Domain of Uncharacterized Protein Rv2277c from Mycobacterium tuberculosis | | Descriptor: | CALCIUM ION, GLYCEROL, Uncharacterized protein Rv2277c | | Authors: | Kim, Y, Li, H, Endres, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) | | Deposit date: | 2017-05-19 | | Release date: | 2017-06-14 | | Last modified: | 2024-11-06 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase Domain of Uncharacterized Protein Rv2277c from Mycobacterium tuberculosis
To Be Published
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4OEC
 | | Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1 | | Descriptor: | Glycerophosphoryl diester phosphodiesterase, MAGNESIUM ION | | Authors: | Atsuta, Y, You, D.J, Takano, K, Koga, Y, Kanaya, S. | | Deposit date: | 2014-01-13 | | Release date: | 2015-01-14 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1
To be Published
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8GHI
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8GHH
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1VD6
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7E2B
 | | GDPD mutant complex from Pyrococcus furiosus DSM 3638 | | Descriptor: | CHOLINE ION, Glycerophosphodiester phosphodiesterase, MAGNESIUM ION, ... | | Authors: | Wang, Y.H, Wang, J, Wang, F.H. | | Deposit date: | 2021-02-05 | | Release date: | 2022-02-09 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (1.85 Å) | | Cite: | Observation of the GPC production during hydrolysis of LPC by GDPD D60A from Pyrococcus furiosus DSM 3638
To Be Published
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7E0V
 | | GDPD from Pyrococcus furiosus DSM 3638 | | Descriptor: | Glycerophosphodiester phosphodiesterase | | Authors: | Wang, Y.H, Wang, J, Wang, F.H. | | Deposit date: | 2021-01-28 | | Release date: | 2022-02-09 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (1.65 Å) | | Cite: | Crystal structure of Bomgl, a monoacylglycerol lipase from marine Bacillus
To Be Published
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7E2A
 | | GDPD mutant from Pyrococcus furiosus DSM 3638 | | Descriptor: | Glycerophosphodiester phosphodiesterase | | Authors: | Wang, Y.H, Wang, J, Wang, F.H. | | Deposit date: | 2021-02-05 | | Release date: | 2022-02-09 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.08 Å) | | Cite: | Crystal structure of glycerophoshphodiester phospodiesterase D60A mutant from Pyrococcus furiosus DSM
To Be Published
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5T9C
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5T9B
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5T91
 | | Crystal structure of B. subtilis 168 GlpQ in complex with bicine | | Descriptor: | BICINE, CALCIUM ION, Glycerophosphoryl diester phosphodiesterase, ... | | Authors: | Li, F.K.K, Strynadka, N.C.J. | | Deposit date: | 2016-09-09 | | Release date: | 2016-11-02 | | Last modified: | 2023-10-04 | | Method: | X-RAY DIFFRACTION (1.53 Å) | | Cite: | Identification of Two Phosphate Starvation-induced Wall Teichoic Acid Hydrolases Provides First Insights into the Degradative Pathway of a Key Bacterial Cell Wall Component.
J. Biol. Chem., 291, 2016
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1YDY
 | | Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli | | Descriptor: | CALCIUM ION, GLYCEROL, Glycerophosphoryl diester phosphodiesterase | | Authors: | Malashkevich, V.N, Fedorov, E, Almo, S.C, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) | | Deposit date: | 2004-12-27 | | Release date: | 2005-01-25 | | Last modified: | 2023-08-23 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli
To be Published
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2OOG
 | | Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus | | Descriptor: | GLYCEROL, Glycerophosphoryl diester phosphodiesterase, SULFATE ION, ... | | Authors: | Patskovsky, Y, Fedorov, E, Toro, R, Sauder, J.M, Smith, D, Freeman, J, Maletic, M, Powell, A, Gheyi, T, Wasserman, S.R, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) | | Deposit date: | 2007-01-25 | | Release date: | 2007-02-06 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase from Staphylococcus Aureus
To be Published
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2OTD
 | | The crystal structure of the glycerophosphodiester phosphodiesterase from Shigella flexneri 2a | | Descriptor: | Glycerophosphodiester phosphodiesterase, PHOSPHATE ION | | Authors: | Zhang, R, Wu, R, Clancy, S, Jiang, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) | | Deposit date: | 2007-02-07 | | Release date: | 2007-03-06 | | Last modified: | 2024-11-20 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | The crystal structure of the glycerophosphodiester phosphodiesterase from Shigella flexneri 2a
To be Published
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1V8E
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2P76
 | | Crystal structure of a Glycerophosphodiester Phosphodiesterase from Staphylococcus aureus | | Descriptor: | GLYCEROL, Glycerophosphoryl diester phosphodiesterase, SODIUM ION | | Authors: | Fedorov, A.A, Fedorov, E.V, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) | | Deposit date: | 2007-03-20 | | Release date: | 2007-04-03 | | Last modified: | 2024-02-21 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | Crystal structure of a Glycerophosphodiester Phosphodiesterase from Staphylococcus aureus
To be Published
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7YM0
 | | Lysoplasmalogen-specific phospholipase D (LyPls-PLD) with Ca2+ | | Descriptor: | CALCIUM ION, Lysoplasmalogenase | | Authors: | Yasutake, Y, Sakasegawa, S, Sugimori, D, Murayama, K. | | Deposit date: | 2022-07-27 | | Release date: | 2023-01-04 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (2.91 Å) | | Cite: | Structural basis for the substrate specificity switching of lysoplasmalogen-specific phospholipase D from Thermocrispum sp. RD004668.
Biosci.Biotechnol.Biochem., 87, 2022
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7YMQ
 | | Crystal structure of lysoplasmalogen specific phopholipase D, F211L mutant | | Descriptor: | Lysoplasmalogenase | | Authors: | Murayama, K, Kato-Murayama, M, Sugimori, D, Shirouzu, M, Hamana, H. | | Deposit date: | 2022-07-29 | | Release date: | 2023-02-08 | | Last modified: | 2024-11-13 | | Method: | X-RAY DIFFRACTION (2.29 Å) | | Cite: | Structural basis for the substrate specificity switching of lysoplasmalogen-specific phospholipase D from Thermocrispum sp. RD004668.
Biosci.Biotechnol.Biochem., 87, 2022
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7YMR
 | | Complex structure of lysoplasmalogen specific phopholipase D, F211L mutant with LPC | | Descriptor: | Lysoplasmalogenase, [(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{5}-azanyl)ethoxy]phosphoryl]oxy-propyl] hexadecanoate | | Authors: | Murayama, K, Kato-Murayama, M, Sugimori, D, Shirouzu, M, Hamana, H. | | Deposit date: | 2022-07-29 | | Release date: | 2023-02-08 | | Last modified: | 2024-11-13 | | Method: | X-RAY DIFFRACTION (2.69 Å) | | Cite: | Structural basis for the substrate specificity switching of lysoplasmalogen-specific phospholipase D from Thermocrispum sp. RD004668.
Biosci.Biotechnol.Biochem., 87, 2022
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