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1XST
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BU of 1xst by Molmil
Solution structure of E.coli RNase P RNA P4 stem, U69A mutation, complexed with cobalt (III) hexammine.
Descriptor: COBALT HEXAMMINE(III), RNA (27-MER)
Authors:Schmitz, M.
Deposit date:2004-10-20
Release date:2004-12-28
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Change of RNase P RNA function by single base mutation correlates with perturbation of metal ion binding in P4 as determined by NMR spectroscopy
Nucleic Acids Res., 32, 2004
3AMU
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BU of 3amu by Molmil
Crystal structure of the TiaS-tRNA(Ile2)-AMPCPP-agmatine complex
Descriptor: AGMATINE, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, Putative uncharacterized protein, ...
Authors:Numata, T, Osawa, T.
Deposit date:2010-08-23
Release date:2011-10-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis of tRNA agmatinylation essential for AUA codon decoding
Nat.Struct.Mol.Biol., 18, 2011
3AMT
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BU of 3amt by Molmil
Crystal structure of the TiaS-tRNA(Ile2)-ATP complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Putative uncharacterized protein, RNA (78-MER)
Authors:Numata, T, Osawa, T.
Deposit date:2010-08-23
Release date:2011-10-12
Last modified:2013-06-19
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of tRNA agmatinylation essential for AUA codon decoding
Nat.Struct.Mol.Biol., 18, 2011
6H5Q
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BU of 6h5q by Molmil
Cryo-EM structure of in vitro assembled Measles virus N into nucleocapsid-like particles (NCLPs) bound to polyA RNA hexamers.
Descriptor: Nucleocapsid, RNA (5'-R(*AP*AP*AP*AP*AP*A)-3')
Authors:Desfosses, A, Milles, S, Ringkjobing Jensen, M, Guseva, S, Colletier, J, Maurin, D, Schoehn, G, Gutsche, I, Ruigrok, R, Blackledge, M.
Deposit date:2018-07-25
Release date:2019-03-13
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Assembly and cryo-EM structures of RNA-specific measles virus nucleocapsids provide mechanistic insight into paramyxoviral replication.
Proc.Natl.Acad.Sci.USA, 116, 2019
6H5S
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BU of 6h5s by Molmil
Cryo-EM map of in vitro assembled Measles virus N into nucleocapsid-like particles (NCLPs) bound to viral genomic 5-prime RNA hexamers.
Descriptor: Nucleocapsid, RNA (5'-R(*AP*CP*CP*AP*GP*A)-3')
Authors:Desfosses, A, Milles, S, Ringkjobing Jensen, M, Guseva, S, Colletier, J.P, Maurin, D, Schoehn, G, Gutsche, I, Ruigrok, R, Blackledge, M.
Deposit date:2018-07-25
Release date:2019-06-12
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Assembly and cryo-EM structures of RNA-specific measles virus nucleocapsids provide mechanistic insight into paramyxoviral replication.
Proc.Natl.Acad.Sci.USA, 116, 2019
1BPE
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BU of 1bpe by Molmil
CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA; EVIDENCE FOR A COMMON POLYMERASE MECHANISM
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA POLYMERASE BETA
Authors:Sawaya, M.R, Pelletier, H, Kumar, A, Wilson, S.H, Kraut, J.
Deposit date:1994-04-12
Release date:1994-07-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism.
Science, 264, 1994
1G71
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BU of 1g71 by Molmil
CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS DNA PRIMASE
Descriptor: CHLORIDE ION, DNA PRIMASE, SULFATE ION, ...
Authors:Augustin, M.A, Huber, R, Kaiser, J.T.
Deposit date:2000-11-08
Release date:2001-01-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a DNA-dependent RNA polymerase (DNA primase).
Nat.Struct.Biol., 8, 2001
1NC0
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BU of 1nc0 by Molmil
U80G U6 Intramolecular Stem-Loop RNA from Saccharomyces cerevisiae
Descriptor: U80G U6 RNA Intramolecular Stem-Loop
Authors:Sashital, D.G, Allmann, A.M, Van Doren, S, Butcher, S.E.
Deposit date:2002-12-04
Release date:2003-02-25
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural Basis for a Lethal Mutation in U6 RNA
Biochemistry, 42, 2003
1BPD
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BU of 1bpd by Molmil
CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM
Descriptor: DNA POLYMERASE BETA, PHOSPHATE ION
Authors:Sawaya, M.R, Pelletier, H, Kumar, A, Wilson, S.H, Kraut, J.
Deposit date:1994-04-12
Release date:1994-06-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism.
Science, 264, 1994
1BPB
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BU of 1bpb by Molmil
CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM
Descriptor: DNA POLYMERASE BETA
Authors:Sawaya, M.R, Pelletier, H, Kumar, A, Wilson, S.H, Kraut, J.
Deposit date:1994-04-12
Release date:1994-06-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism.
Science, 264, 1994
4I9Q
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BU of 4i9q by Molmil
Crystal structure of the ternary complex of the D714A mutant of RB69 DNA polymerase
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3'), ...
Authors:Guja, K.E, Jacewicz, A, Trzemecka, A, Plochocka, D, Yakubovskaya, E, Bebenek, A, Garcia-Diaz, M.
Deposit date:2012-12-05
Release date:2013-10-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site.
Plos One, 8, 2013
3AX1
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BU of 3ax1 by Molmil
Molecular insights into miRNA processing by Arabidopsis Serrate
Descriptor: Serrate RNA effector molecule, ZINC ION
Authors:Yuan, Y.A, Machida, S, Chen, H.Y.
Deposit date:2011-03-28
Release date:2011-07-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Molecular insights into miRNA processing by Arabidopsis thaliana SERRATE
Nucleic Acids Res., 39, 2011
4NBO
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BU of 4nbo by Molmil
Human steroid receptor RNA activator protein carboxy-terminal domain
Descriptor: Steroid receptor RNA activator 1
Authors:Mckay, D.B, Xi, L, Barthel, K.K.B, Cech, T.C.
Deposit date:2013-10-23
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.807 Å)
Cite:Structure and function of steroid receptor RNA activator protein, the proposed partner of SRA noncoding RNA.
J.Mol.Biol., 426, 2014
2LBR
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BU of 2lbr by Molmil
Conformation Effects of Base Modification on the Anticodon Stem-loop of Bacillus subtilis tRNATYR
Descriptor: RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*(6IA)P*AP*(PSU)P*CP*CP*CP*C)-3')
Authors:Denmon, A.P, Wang, J, Nikonowicz, E.P.
Deposit date:2011-04-05
Release date:2011-08-03
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr).
J.Mol.Biol., 412, 2011
6HVO
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BU of 6hvo by Molmil
Crystal structure of human PCNA in complex with three peptides of p12 subunit of human polymerase delta
Descriptor: DNA polymerase delta subunit 4, Proliferating cell nuclear antigen, SULFATE ION
Authors:Gonzalez-Magana, A, Romano-Moreno, M, Rojas, A.L, Blanco, F.J, De Biasio, A.
Deposit date:2018-10-11
Release date:2019-01-23
Last modified:2019-03-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The p12 subunit of human polymerase delta uses an atypical PIP box for molecular recognition of proliferating cell nuclear antigen (PCNA).
J.Biol.Chem., 294, 2019
1XSU
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BU of 1xsu by Molmil
Solution structure of E.coli RNase P RNA P4 stem, U69C/C70U mutation, complexed with cobalt (III) hexammine.
Descriptor: COBALT HEXAMMINE(III), RNA (27-MER)
Authors:Schmitz, M.
Deposit date:2004-10-20
Release date:2004-12-28
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Change of RNase P RNA function by single base mutation correlates with perturbation of metal ion binding in P4 as determined by NMR spectroscopy
Nucleic Acids Res., 32, 2004
2CLX
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BU of 2clx by Molmil
4-Arylazo-3,5-diamino-1H-pyrazole CDK Inhibitors: SAR Study, Crystal Structure in Complex with CDK2, Selectivity, and Cellular Effects
Descriptor: 4-[(E)-(3,5-DIAMINO-1H-PYRAZOL-4-YL)DIAZENYL]PHENOL, CELL DIVISION PROTEIN KINASE 2
Authors:Krystof, V, Cankar, P, Frysova, I, Slouka, J, Kontopidis, G, Dzubak, P, Hajduch, M, Deazevedo, W.F, Paprskarova, M, Orsag, M, Rolcik, J, Latr, A, Fischer, P.M, Strnad, M.
Deposit date:2006-05-02
Release date:2006-11-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:4-Arylazo-3,5-Diamino-1H-Pyrazole Cdk Inhibitors: Sar Study, Crystal Structure in Complex with Cdk2, Selectivity, and Cellular Effects
J.Med.Chem., 49, 2006
4QM6
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BU of 4qm6 by Molmil
Structure of bacterial polynucleotide kinase bound to GTP and RNA
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Metallophosphoesterase, ...
Authors:Das, U, Wang, L.K, Smith, P, Shuman, S.
Deposit date:2014-06-15
Release date:2014-10-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structures of bacterial polynucleotide kinase in a michaelis complex with nucleoside triphosphate (NTP)-Mg2+ and 5'-OH RNA and a mixed substrate-product complex with NTP-Mg2+ and a 5'-phosphorylated oligonucleotide.
J.Bacteriol., 196, 2014
2ATL
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BU of 2atl by Molmil
Unmodified Insertion Ternary Complex
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*CP*T*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3', ...
Authors:Rechkoblit, O, Malinina, L, Cheng, Y, Kuryavyi, V, Broyde, S, Geacintov, N.E, Patel, D.J.
Deposit date:2005-08-25
Release date:2006-01-10
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Stepwise Translocation of Dpo4 Polymerase during Error-Free Bypass of an oxoG Lesion
Plos Biol., 4, 2006
6Y83
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BU of 6y83 by Molmil
Capsid structure of Leishmania RNA virus 1
Descriptor: Capsid protein
Authors:Prochazkova, M, Fuzik, T, Grybtchuk, D, Falginella, F, Podesvova, L, Yurchenko, V, Vacha, R, Plevka, P.
Deposit date:2020-03-03
Release date:2020-11-11
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (3.65 Å)
Cite:Capsid Structure of Leishmania RNA Virus 1.
J.Virol., 95, 2021
3L0U
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BU of 3l0u by Molmil
The crystal structure of unmodified tRNAPhe from Escherichia coli
Descriptor: MAGNESIUM ION, POTASSIUM ION, Unmodified tRNAPhe
Authors:Byrne, R.T, Konevega, A.L, Rodnina, M.V, Antson, A.A.
Deposit date:2009-12-10
Release date:2010-03-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:The crystal structure of unmodified tRNAPhe from Escherichia coli
Nucleic Acids Res., 38, 2010
2ASD
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BU of 2asd by Molmil
oxoG-modified Insertion Ternary Complex
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3', ...
Authors:Rechkoblit, O, Malinina, L, Cheng, Y, Kuryavyi, V, Broyde, S, Geacintov, N.E, Patel, D.J.
Deposit date:2005-08-23
Release date:2006-01-10
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Stepwise Translocation of Dpo4 Polymerase during Error-Free Bypass of an oxoG Lesion
Plos Biol., 4, 2006
4KHN
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BU of 4khn by Molmil
Crystal structure of the ternary complex of the D714A mutant of RB69 DNA polymerase
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3'), ...
Authors:Guja, K.E, Jacewicz, A, Trzemecka, A, Plochocka, D, Yakubovskaya, E, Bebenek, A, Garcia-Diaz, M.
Deposit date:2013-04-30
Release date:2013-10-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site.
Plos One, 8, 2013
1KKA
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BU of 1kka by Molmil
Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe)
Descriptor: anticodon stem-loop of tRNA(PHE)
Authors:Cabello-Villegas, J, Winkler, M.E, Nikonowicz, E.P.
Deposit date:2001-12-06
Release date:2002-07-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe).
J.Mol.Biol., 319, 2002
1JID
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BU of 1jid by Molmil
Human SRP19 in complex with helix 6 of Human SRP RNA
Descriptor: HELIX 6 OF HUMAN SRP RNA, MAGNESIUM ION, SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN
Authors:Wild, K, Sinning, I, Cusack, S.
Deposit date:2001-07-02
Release date:2001-10-19
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of an early protein-RNA assembly complex of the signal recognition particle.
Science, 294, 2001

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