Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9NL6
DownloadVisualize
BU of 9nl6 by Molmil
E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-03-02
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
To Be Published
8RPH
DownloadVisualize
BU of 8rph by Molmil
JanthE from Janthinobacterium sp. HH01,ketobutyryl-ThDP
Descriptor: (2~{S})-2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-5-[2-[oxidanyl(phosphonooxy)phosphoryl]oxyethyl]-1,3-thiazol-2-yl]-2-oxidanyl-butanoic acid, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, ...
Authors:Lanza, L, Leogrande, C, Rabe von Pappenheim, F, Tittmann, K, Mueller, M.
Deposit date:2024-01-16
Release date:2024-06-12
Last modified:2024-08-21
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:Identification and Characterization of Thiamine Diphosphate-Dependent Lyases with an Unusual CDG Motif.
Angew.Chem.Int.Ed.Engl., 63, 2024
9DR0
DownloadVisualize
BU of 9dr0 by Molmil
Hare calicivirus protruding domain
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, Hare calicivirus protruding domain
Authors:Reese, T, Pancera, M, Hansman, G.
Deposit date:2024-09-24
Release date:2024-10-30
Last modified:2025-05-14
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural analysis of a non-pathogenic hare calicivirus capsid bound to a histo-blood group antigen co-factor.
J.Virol., 98, 2024
9RCI
DownloadVisualize
BU of 9rci by Molmil
Crystal Structure of Flap Endonuclease FEN1 with Compound 28
Descriptor: (3~{S})-13-[(1~{S})-1-(2-methylquinolin-7-yl)ethoxy]-11-oxidanyl-5-oxa-1,8-diazatricyclo[8.4.0.0^{3,8}]tetradeca-10,13-diene-9,12-dione, 1,2-ETHANEDIOL, Flap endonuclease 1, ...
Authors:Toste Rego, A, Pica, A, Cornaciu, I, Burgdorf, L, Mann, S.E.
Deposit date:2025-05-29
Release date:2025-09-24
Last modified:2025-10-01
Method:X-RAY DIFFRACTION (1.662 Å)
Cite:Fragment-Based Discovery and Structure-Led Optimization of MSC778, the First Potent, Selective, and Orally Bioavailable FEN1 Inhibitor.
J.Med.Chem., 2025
9NA2
DownloadVisualize
BU of 9na2 by Molmil
IRAK4 in Complex with Compound 9
Descriptor: (6P)-6-[(8R)-3-cyanopyrrolo[1,2-b]pyridazin-7-yl]-N-[(2R)-2-fluoro-3-hydroxy-3-methylbutyl]-4-(methylamino)pyridine-3-carboxamide, DIMETHYL SULFOXIDE, Interleukin-1 receptor-associated kinase 4
Authors:Ferrao, R, Lansdon, E.B.
Deposit date:2025-02-11
Release date:2025-05-28
Last modified:2025-06-18
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Discovery of Edecesertib (GS-5718): A Potent, Selective Inhibitor of IRAK4.
J.Med.Chem., 68, 2025
8RCP
DownloadVisualize
BU of 8rcp by Molmil
Structure of Human Serum Albumin in complex with Myristic Acid
Descriptor: 1,2-ETHANEDIOL, MYRISTIC ACID, Serum albumin
Authors:Pomyalov, S, Sidorenko, V.S, Grollman, A.P, Shoham, G.
Deposit date:2023-12-06
Release date:2024-06-26
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and mechanistic insights into the transport of aristolochic acids and their active metabolites by human serum albumin.
J.Biol.Chem., 300, 2024
8CLO
DownloadVisualize
BU of 8clo by Molmil
Zearalenone lactonase from Streptomyces coelicoflavus
Descriptor: 1,2-ETHANEDIOL, Hydrolase
Authors:Puehringer, D, Grishkovskaya, I, Mlynek, G, Kostan, J.
Deposit date:2023-02-17
Release date:2024-02-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Bacterial Lactonases ZenA with Noncanonical Structural Features Hydrolyze the Mycotoxin Zearalenone.
Acs Catalysis, 14, 2024
9QFU
DownloadVisualize
BU of 9qfu by Molmil
Human Tryptase beta-2 (hTPSB2) complexed with covalent inhibitor Compound #1
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Porta, A, Manelfi, C, Talarico, C, Beccari, A.R, Brindisi, M, Summa, V, Iaconis, D, Gobbi, M, Beeg, M.
Deposit date:2025-03-12
Release date:2025-03-26
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (1.983 Å)
Cite:Integrating Surface Plasmon Resonance and Docking Analysis for Mechanistic Insights of Tryptase Inhibitors.
Molecules, 30, 2025
6T4E
DownloadVisualize
BU of 6t4e by Molmil
Native C3-like protease from Southampton virus complexed with FMOPL000287a.
Descriptor: Genome polyprotein, ~{N}-[2-(5-fluoranyl-1~{H}-indol-3-yl)ethyl]ethanamide
Authors:Guo, J, Cooper, J.B.
Deposit date:2019-10-13
Release date:2020-08-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:In crystallo-screening for discovery of human norovirus 3C-like protease inhibitors.
J Struct Biol X, 4, 2020
6T5R
DownloadVisualize
BU of 6t5r by Molmil
3C-like protease from Southampton virus complexed with FMOPL000091a.
Descriptor: 3-(5-thiophen-2-ylthiophen-2-yl)-1~{H}-pyrazole, DIMETHYL SULFOXIDE, Genome polyprotein, ...
Authors:Guo, J, Cooper, J.B.
Deposit date:2019-10-16
Release date:2020-08-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:In crystallo-screening for discovery of human norovirus 3C-like protease inhibitors.
J Struct Biol X, 4, 2020
7QI3
DownloadVisualize
BU of 7qi3 by Molmil
Structure of Fusarium verticillioides NAT1 (FDB2) N-malonyltransferase
Descriptor: 1,2-ETHANEDIOL, Arylamine N-acetyltransferase, DI(HYDROXYETHYL)ETHER, ...
Authors:Lowe, E.D, Kotomina, E, Karagianni, E, Boukouvala, S.
Deposit date:2021-12-14
Release date:2022-11-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Fusarium verticillioides NAT1 (FDB2) N-malonyltransferase is structurally, functionally and phylogenetically distinct from its N-acetyltransferase (NAT) homologues.
Febs J., 290, 2023
7QUK
DownloadVisualize
BU of 7quk by Molmil
ATAD2 in complex with FragLite1
Descriptor: 1,2-ETHANEDIOL, 4-bromo-1H-pyrazole, ATPase family AAA domain-containing protein 2, ...
Authors:Turberville, S, Martin, M.P, Hope, I, Noble, M.E.M.
Deposit date:2022-01-18
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions.
J.Med.Chem., 65, 2022
8OOD
DownloadVisualize
BU of 8ood by Molmil
Crystal structure of human DCAF1 WD40 repeats (Q1250L) in complex with compound 15
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DDB1- and CUL4-associated factor 1, ...
Authors:Schroeder, M, Renatus, M.
Deposit date:2023-04-05
Release date:2023-05-24
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.497 Å)
Cite:Reinstating targeted protein degradation with DCAF1 PROTACs in CRBN PROTAC resistant settings
Biorxiv, 2023
7QZZ
DownloadVisualize
BU of 7qzz by Molmil
ATAD2 in complex with FragLite31
Descriptor: 1,2-ETHANEDIOL, 2-(4-bromanyl-2-methoxy-phenyl)ethanoic acid, ATPase family AAA domain-containing protein 2, ...
Authors:Turberville, S, Martin, M.P, Hope, I, Noble, M.E.M.
Deposit date:2022-02-01
Release date:2022-12-07
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions.
J.Med.Chem., 65, 2022
7QX1
DownloadVisualize
BU of 7qx1 by Molmil
ATAD2 in complex with FragLite7
Descriptor: 1,2-ETHANEDIOL, 4-iodanyl-3~{H}-pyridin-2-one, ATPase family AAA domain-containing protein 2, ...
Authors:Turberville, S, Martin, M.P, Hope, I, Noble, M.E.M.
Deposit date:2022-01-26
Release date:2022-11-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions.
J.Med.Chem., 65, 2022
6T8R
DownloadVisualize
BU of 6t8r by Molmil
3C-like protease from Southampton virus complexed with FMOPL000605a.
Descriptor: 4-(5-amino-1,3,4-thiadiazol-2-yl)phenol, DIMETHYL SULFOXIDE, Genome polyprotein, ...
Authors:Guo, J, Cooper, J.B.
Deposit date:2019-10-24
Release date:2020-08-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:In crystallo-screening for discovery of human norovirus 3C-like protease inhibitors.
J Struct Biol X, 4, 2020
9OWB
DownloadVisualize
BU of 9owb by Molmil
Human WRN helicase in complex with allosteric ligand Compound 6
Descriptor: 1,2-ETHANEDIOL, Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN, CHLORIDE ION, ...
Authors:Palte, R.L, Koglin, M, Maskos, K, Tauchert, M.J.
Deposit date:2025-06-02
Release date:2025-09-10
Last modified:2025-09-17
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:High-throughput evaluation of novel WRN inhibitors.
Slas Discov, 35, 2025
8OO5
DownloadVisualize
BU of 8oo5 by Molmil
Crystal structure of human DCAF1 WD40 repeats (Q1250L) in complex with compound 13
Descriptor: 1,2-ETHANEDIOL, 1-[4-[4-(2-azanylethylamino)-2-[1-(4-chlorophenyl)cyclohexyl]quinazolin-7-yl]piperazin-1-yl]ethanone, DDB1- and CUL4-associated factor 1
Authors:Schroeder, M, Renatus, M.
Deposit date:2023-04-04
Release date:2023-05-24
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Reinstating targeted protein degradation with DCAF1 PROTACs in CRBN PROTAC resistant settings
Biorxiv, 2023
7M07
DownloadVisualize
BU of 7m07 by Molmil
Pre-catalytic ternary complex of DNA Polymerase Lambda with bound 1-nt gapped SSB substrate and incoming dUMPNPP
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, ...
Authors:Kaminski, A.M, Bebenek, K, Pedersen, L.C, Kunkel, T.A.
Deposit date:2021-03-10
Release date:2022-03-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Analysis of diverse double-strand break synapsis with Pol lambda reveals basis for unique substrate specificity in nonhomologous end-joining.
Nat Commun, 13, 2022
7OY8
DownloadVisualize
BU of 7oy8 by Molmil
Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, (2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate, 2-azanyl-5-[(2~{E},6~{E},8~{E},10~{E},12~{E},14~{E},18~{E},22~{E},26~{E},30~{E},34~{E})-3,7,11,15,19,23,27,31,35,39-decamethyltetraconta-2,6,8,10,12,14,18,22,26,30,34,38-dodecaenyl]-3-methoxy-6-methyl-cyclohexa-2,5-diene-1,4-dione, ...
Authors:Qian, P, Croll, T.I, Castro, H.P, Moriarty, N.W, sader, K, Hunter, C.N.
Deposit date:2021-06-23
Release date:2021-09-22
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Cryo-EM structure of the Rhodospirillum rubrum RC-LH1 complex at 2.5 angstrom.
Biochem.J., 478, 2021
4R8K
DownloadVisualize
BU of 4r8k by Molmil
Crystal structure of the guinea pig L-asparaginase 1 catalytic domain
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Uncharacterized protein
Authors:Schalk, A.M, Lavie, A.
Deposit date:2014-09-02
Release date:2014-10-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Identification and Structural Analysis of an l-Asparaginase Enzyme from Guinea Pig with Putative Tumor Cell Killing Properties.
J.Biol.Chem., 289, 2014
8PAF
DownloadVisualize
BU of 8paf by Molmil
Crystal structure of human Histidine Triad Nucleotide-Binding Protein 1 in complex with 5'-O-[N-(3-Indolepropionic acid)sulfamoyl] 2-aminoethenoadenosine
Descriptor: 5'-O-[N-(3-Indolepropionic acid)sulfamoyl] 2-aminoethenoadenosine, Histidine triad nucleotide-binding protein 1
Authors:Dolot, R.M, Dillenburg, M, Wagner, C.R.
Deposit date:2023-06-07
Release date:2023-06-14
Last modified:2025-07-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:HINT1 Inhibitors as Selective Modulators of MOR-NMDAR Cross-Regulation and Non-Opioid Analgesia.
Acs Chem Neurosci, 16, 2025
8PAI
DownloadVisualize
BU of 8pai by Molmil
Crystal structure of human Histidine Triad Nucleotide-Binding Protein 1 in complex with 5'-O-[N-(3-Indolepropionic acid)sulfamoyl] N2-methyl-2-aminoethenoadenosine
Descriptor: 5'-O-[N-(3-Indolepropionic acid)sulfamoyl] N2-methyl-2-aminoethenoadenosine, Histidine triad nucleotide-binding protein 1
Authors:Dolot, R.M, Dillenburg, M, Wagner, C.R.
Deposit date:2023-06-07
Release date:2023-06-14
Last modified:2025-07-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:HINT1 Inhibitors as Selective Modulators of MOR-NMDAR Cross-Regulation and Non-Opioid Analgesia.
Acs Chem Neurosci, 16, 2025
8RSI
DownloadVisualize
BU of 8rsi by Molmil
Crystal structure of Methanobrevibacter oralis macrodomain
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLUTAMIC ACID, ...
Authors:Ariza, A.
Deposit date:2024-01-24
Release date:2024-09-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.059 Å)
Cite:Evolutionary and molecular basis of ADP-ribosylation reversal by zinc-dependent macrodomains.
J.Biol.Chem., 300, 2024
2V7R
DownloadVisualize
BU of 2v7r by Molmil
Crystal structure of a human tRNAGly microhelix at 1.2 Angstrom resolution
Descriptor: HUMAN TRNAGLY MICROHELIX
Authors:Foerster, C, Mankowska, M, Fuerste, J.P, Perbandt, M, Betzel, C, Erdmann, V.A.
Deposit date:2007-08-01
Release date:2008-03-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal Structure of a Human Trnagly Microhelix at 1.2 A Resolution.
Biochem.Biophys.Res.Commun., 368, 2008

242842

数据于2025-10-08公开中

PDB statisticsPDBj update infoContact PDBjnumon