PDB: 1573 resultsInfo pagesStatus searchChemie searchBIRD

---

7S6P	The crystal structure of human ISG15 Descriptor: Ubiquitin-like protein ISG15 Authors: Osipiuk, J, Tesar, C, Jedrzejczak, R, Endres, M, Wydorski, P, Joachimiak, L, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2021-09-14 Release date: 2021-09-22 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin. Nat Commun, 14, 2023
5TOG	Room temperature structure of ubiquitin variant u7ub25.2540 Descriptor: Polyubiquitin-B, SULFATE ION Authors: Biel, J.T, Thompson, M.C, Cunningham, C.N, Corn, J.E, Fraser, J.S. Deposit date: 2016-10-17 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.08 Å) Cite: Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. Structure, 25, 2017
5M93	Crystal structure of SdeA-modified ubiquitin. Descriptor: Polyubiquitin-B, SULFATE ION, alpha-D-ribofuranose Authors: Kalayil, S, Bhogaraju, S, Dikic, I. Deposit date: 2016-10-31 Release date: 2016-12-14 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.793 Å) Cite: Phosphoribosylation of Ubiquitin Promotes Serine Ubiquitination and Impairs Conventional Ubiquitination. Cell, 167, 2016
5TOF	Room temperature structure of ubiquitin variant u7ub25 Descriptor: Polyubiquitin-B, SULFATE ION Authors: Biel, J.T, Thompson, M.C, Cunningham, C.N, Corn, J.E, Fraser, J.S. Deposit date: 2016-10-17 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.12 Å) Cite: Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. Structure, 25, 2017
5MN9	Crystal structure of MINDY-1 tMIU in complex with K48-diUb Descriptor: Ubiquitin carboxyl-terminal hydrolase MINDY-1, Ubiquitin-40S ribosomal protein S27a Authors: Kristariyanto, Y.A, Abdul Rehman, S.A, Kulathu, Y. Deposit date: 2016-12-13 Release date: 2017-01-25 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.05 Å) Cite: A single MIU motif of MINDY-1 recognizes K48-linked polyubiquitin chains. EMBO Rep., 18, 2017
5TR5	Solution structure of Serine 65 phosphorylated UBL domain from parkin Descriptor: E3 ubiquitin-protein ligase parkin Authors: Aguirre, J.D, Dunkerley, K.M, Mercier, P, Shaw, G.S. Deposit date: 2016-10-25 Release date: 2016-12-21 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Structure of phosphorylated UBL domain and insights into PINK1-orchestrated parkin activation. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NL4	Crystal structure of Zn1.3-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/1.3 mM E16V hUb Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Fermani, S, Falini, G. Deposit date: 2017-04-04 Release date: 2017-04-26 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.32 Å) Cite: Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5TLA	Crystal structure of mouse ISG15 Descriptor: Ubiquitin-like protein ISG15 Authors: Goodwin, O.Y, Dzimianski, J.V, Daczkowski, C.M, Pegan, S.D. Deposit date: 2016-10-10 Release date: 2017-05-03 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.244 Å) Cite: Structural Insights into the Interaction of Coronavirus Papain-Like Proteases and Interferon-Stimulated Gene Product 15 from Different Species. J. Mol. Biol., 429, 2017
5NMC	Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM hUb Descriptor: ACETATE ION, Polyubiquitin-C, ZINC ION Authors: Fermani, S, Falini, G. Deposit date: 2017-04-05 Release date: 2017-05-03 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NL5	Crystal structure of Zn1.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/1.3 mM E16V hUb Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-B, ... Authors: Fermani, S, Falini, G. Deposit date: 2017-04-04 Release date: 2017-04-26 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NLF	Crystal structure of Zn2.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 100 mM zinc acetate/1.3 mM E16V hUb Descriptor: ACETATE ION, Polyubiquitin-C, ZINC ION Authors: Fermani, S, Falini, G. Deposit date: 2017-04-04 Release date: 2017-05-03 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NLJ	Crystal structure of Zn3-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM E16V hUb Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Fermani, S, Falini, G. Deposit date: 2017-04-04 Release date: 2017-04-26 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.53 Å) Cite: Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NLI	Crystal structure of Zn2-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/10% v/v TFE/1.3 mM E16V hUb Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-C, ... Authors: Fermani, S, Falini, G. Deposit date: 2017-04-04 Release date: 2017-05-03 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.53 Å) Cite: Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5UJL	Representative 1-conformer ensembles of K27-linked Ub2 from RDC data Descriptor: Ubiquitin Authors: Castaneda, C.A, Fushman, D. Deposit date: 2017-01-18 Release date: 2017-10-25 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins. Structure, 24, 2016
5UJN	Representative 2-conformer ensembles of K27-linked Ub2 from RDC data Descriptor: Ubiquitin Authors: Castaneda, C.A, Fushman, D. Deposit date: 2017-01-18 Release date: 2018-08-08 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins. Structure, 24, 2016
5N9V	NMR solution structure of ubl5 domain from polyubiquitin locus of T.thermophila. Descriptor: NAD(P)(+)--arginine ADP-ribosyltransferase Authors: Chiarini, V, Tossavainen, H. Deposit date: 2017-02-27 Release date: 2018-03-21 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: NMR structure of a non-conjugatable, ADP-ribosylation associated, ubiquitin-like domain from Tetrahymena thermophila polyubiquitin locus. Biochim Biophys Acta Gen Subj, 1863, 2019
5O44	Crystal structure of unbranched mixed tri-Ubiquitin chain containing K48 and K63 linkages. Descriptor: MAGNESIUM ION, Polyubiquitin-B, SULFATE ION, ... Authors: Padala, P, Isupov, M.N, Wiener, R. Deposit date: 2017-05-26 Release date: 2017-11-08 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.14 Å) Cite: The Crystal Structure and Conformations of an Unbranched Mixed Tri-Ubiquitin Chain Containing K48 and K63 Linkages. J. Mol. Biol., 429, 2017
5NVG	Thr12 Phosphorylated Ubiquitin Descriptor: DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Polyubiquitin-B Authors: Huguenin-Dezot, N. Deposit date: 2017-05-04 Release date: 2017-05-31 Last modified: 2017-09-13 Method: X-RAY DIFFRACTION (1.07 Å) Cite: Biosynthesis and genetic encoding of phosphothreonine through parallel selection and deep sequencing. Nat. Methods, 14, 2017
5VIX	Crystal structure of Polyubiquitin with 3 ub domains, domains 1 and 2, from Naegleria fowleri ATCC 30863 Descriptor: NITRATE ION, Polyubiquitin Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2017-04-17 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structure of polyubiquitin with 3 ub domains, domains 1 and 2, from Naegleria fowleri ATCC 30863 TO BE PUBLISHED
5W46	Structure of S65D Phosphomimetic Ubiquitin Refined at 1.2 Angstroms Resolution Descriptor: MAGNESIUM ION, Polyubiquitin-B Authors: Kazansky, Y, Singh, R.K, Fushman, D. Deposit date: 2017-06-09 Release date: 2017-07-05 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Impact of different ionization states of phosphorylated Serine-65 on ubiquitin structure and interactions. Sci Rep, 8, 2018
5VSX	Structure of the Ubl domain of Sacsin Descriptor: Sacsin Authors: Trempe, J.-F, Pande, H, Shenker, S, Gehring, K. Deposit date: 2017-05-13 Release date: 2017-05-31 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J. Biol. Chem., 293, 2018
5VSZ	Structure of the Ubl domain of Sacsin mutant L78M Descriptor: Sacsin Authors: Trempe, J.-F, Pande, H, Shenker, S, Gehring, K. Deposit date: 2017-05-15 Release date: 2017-05-31 Last modified: 2018-08-29 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J. Biol. Chem., 293, 2018
5VF0	Solution NMR structure of human RAD18 (198-240) in complex with ubiquitin Descriptor: E3 ubiquitin-protein ligase RAD18, Polyubiquitin-B, ZINC ION Authors: Hu, Q, Botuyan, M.V, Mer, G. Deposit date: 2017-04-06 Release date: 2017-05-17 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Mechanisms of Ubiquitin-Nucleosome Recognition and Regulation of 53BP1 Chromatin Recruitment by RNF168/169 and RAD18. Mol. Cell, 66, 2017
5X3O	Crystal structure of p-DiUb-S65-COOH Descriptor: D-ubiquitin, Polyubiquitin-B Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-02-06 Release date: 2017-04-12 Last modified: 2022-02-09 Method: X-RAY DIFFRACTION (2.194 Å) Cite: Structure of p-DiUb-S65-COOH at 2.19 Angstroms resolution. To Be Published
5X3N	Crystal structure of DiUb-K6 Descriptor: PHOSPHATE ION, Polyubiquitin-B Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-02-06 Release date: 2017-04-12 Method: X-RAY DIFFRACTION (1.649 Å) Cite: Structure of p-Ub-S65-NH2 at 1.82 Angstroms resolution. To Be Published

<234567891011121314151617>