PDB: 2044 resultsInfo pagesStatus searchChemie searchBIRD

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7YV3	genetically encoded pH sensor Lime at pH10 Descriptor: Lime Authors: Wen, Y, Shen, Y, Campbell, R, Lemieux, M.J. Deposit date: 2022-08-18 Release date: 2023-08-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2 Å) Cite: Rational Engineering of an Improved Genetically Encoded pH Sensor Based on Superecliptic pHluorin. ACS Sens, 8, 2023
7YSJ	GluK1-1a in nanodisc captured in SYM2081 bound desensitized state Descriptor: Glutamate receptor Authors: Dhingra, S, Kumar, J. Deposit date: 2022-08-12 Release date: 2023-08-16 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (5.2 Å) Cite: Functional Implications of the Exon 9 Splice Insert in GluK1 Kainate Receptors Elife, 2023
7YV5	genetically encoded pH sensor Lime at pH6 Descriptor: Lime Authors: Wen, Y, Shen, Y, Campbell, R, Lemieux, M.J. Deposit date: 2022-08-18 Release date: 2023-08-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Rational Engineering of an Improved Genetically Encoded pH Sensor Based on Superecliptic pHluorin. ACS Sens, 8, 2023
8IMX	Cryo-EM structure of GPI-T with a chimeric GPI-anchored protein Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Xu, Y, Li, T, Qu, Q, Li, D. Deposit date: 2023-03-07 Release date: 2023-08-16 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (2.85 Å) Cite: Structures of liganded glycosylphosphatidylinositol transamidase illuminate GPI-AP biogenesis. Nat Commun, 14, 2023
8IMY	Cryo-EM structure of GPI-T (inactive mutant) with GPI and proULBP2, a proprotein substrate Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Li, T, Xu, Y, Qu, Q, Li, D. Deposit date: 2023-03-07 Release date: 2023-08-16 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.22 Å) Cite: Structures of liganded glycosylphosphatidylinositol transamidase illuminate GPI-AP biogenesis. Nat Commun, 14, 2023
8B2L	Cryo-EM structure of the plant 80S ribosome Descriptor: 18S rRNA, 25S rRNA, 30S ribosomal protein S15, ... Authors: Smirnova, J, Loerke, J, Kleinau, G, Schmidt, A, Buerger, J, Meyer, E.H, Mielke, T, Scheerer, P, Bock, R, Spahn, C.M.T, Zoschke, R. Deposit date: 2022-09-14 Release date: 2023-08-23 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: Structure of the actively translating plant 80S ribosome at 2.2 angstrom resolution. Nat.Plants, 9, 2023
8EVP	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... Authors: Zhao, Y, Rai, J, Li, H. Deposit date: 2022-10-20 Release date: 2023-09-06 Method: ELECTRON MICROSCOPY (2.38 Å) Cite: Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8EVT	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... Authors: Zhao, Y, Rai, J, Li, H. Deposit date: 2022-10-20 Release date: 2023-09-06 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8BHF	Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4 Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S11, ... Authors: Absmeier, E, Chandrasekaran, V, O'Reilly, F.J, Stowell, J.A.W, Rappsilber, J, Passmore, L.A. Deposit date: 2022-10-31 Release date: 2023-09-06 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Modulation of GluA2-gamma 5 synaptic complex desensitization, polyamine block and antiepileptic perampanel inhibition by auxiliary subunit cornichon-2. Nat.Struct.Mol.Biol., 30, 2023
8EUB	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S0-A, ... Authors: Zhao, Y, Rai, J, Li, H. Deposit date: 2022-10-18 Release date: 2023-09-06 Method: ELECTRON MICROSCOPY (2.52 Å) Cite: Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8EVR	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II Descriptor: (1S,3S,3aR,4S,4aR,7R,7aR,8aS)-8a-{[(6-deoxy-4-O-methyl-alpha-D-altropyranosyl)oxy]methyl}-4-formyl-7-methyl-3-(propan-2-yl)decahydro-1,4-methano-s-indacene-3a(1H)-carboxylate, 18S rRNA, 25S rRNA, ... Authors: Zhao, Y, Rai, J, Li, H. Deposit date: 2022-10-20 Release date: 2023-09-06 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8EVS	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... Authors: Zhao, Y, Rai, J, Li, H. Deposit date: 2022-10-20 Release date: 2023-09-06 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (2.62 Å) Cite: Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8EVQ	Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... Authors: Zhao, Y, Rai, J, Li, H. Deposit date: 2022-10-20 Release date: 2023-09-06 Method: ELECTRON MICROSCOPY (2.72 Å) Cite: Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8EWB	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... Authors: Zhao, Y, Rai, J, Li, H. Deposit date: 2022-10-22 Release date: 2023-09-06 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8EWC	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... Authors: Zhao, Y, Rai, J, Li, H. Deposit date: 2022-10-22 Release date: 2023-09-06 Method: ELECTRON MICROSCOPY (2.45 Å) Cite: Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8HCO	Substrate-engaged TOM complex from yeast Descriptor: Mitochondrial import receptor subunit TOM22, Mitochondrial import receptor subunit TOM40, Mitochondrial import receptor subunit TOM5, ... Authors: Zhou, X.Y, Yang, Y.Q, Wang, G.P, Wang, S.S. Deposit date: 2022-11-02 Release date: 2023-09-13 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Molecular pathway of mitochondrial preprotein import through the TOM-TIM23 supercomplex. Nat.Struct.Mol.Biol., 30, 2023
8Q5I	Structure of Candida albicans 80S ribosome in complex with cephaeline Descriptor: 18S ribosomal RNA, 25S rRNA, 40S ribosomal protein S0, ... Authors: Kolosova, O, Zgadzay, Y, Stetsenko, A, Atamas, A, Guskov, A, Yusupov, M. Deposit date: 2023-08-09 Release date: 2023-09-13 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.45 Å) Cite: Structural characterization of cephaeline binding to the eukaryotic ribosome using Cryo-Electron Microscopy Biopolym Cell, 2023
8CDL	80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-01-31 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.72 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CDR	Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-01-31 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.04 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CF5	Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-02-02 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.71 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CGN	Non-rotated 80S S. cerevisiae ribosome with ligands Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-02-06 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.28 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CCS	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-01-27 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (1.97 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CKU	Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-02-16 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.11 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CIV	Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-02-10 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.47 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024
8CMJ	Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. Deposit date: 2023-02-20 Release date: 2023-09-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.79 Å) Cite: mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024

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