Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1MLY
DownloadVisualize
BU of 1mly by Molmil
Crystal Structure of 7,8-Diaminopelargonic Acid Synthase in complex with the cis isomer of amiclenomycin
Descriptor: 7,8-diamino-pelargonic acid aminotransferase, CIS-AMICLENOMYCIN, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Sandmark, J, Mann, S, Marquet, A, Schneider, G.
Deposit date:2002-09-02
Release date:2002-12-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Structural basis for the inhibition of the biosynthesis of biotin by the antibiotic amiclenomycin
J.Biol.Chem., 277, 2002
4O5C
DownloadVisualize
BU of 4o5c by Molmil
Structure of human DNA polymerase complexed with N7-MG as the template base in a 1-nucleotide gapped DNA
Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*(FMG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ...
Authors:Koag, M.C, Lee, S.
Deposit date:2013-12-19
Release date:2014-07-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.363 Å)
Cite:Transition-state destabilization reveals how human DNA polymerase beta proceeds across the chemically unstable lesion N7-methylguanine.
Nucleic Acids Res., 42, 2014
8Y6U
DownloadVisualize
BU of 8y6u by Molmil
Cryo-EM structure of E.coli transcription initiation complex with transcription factor GcvA
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Lin, W, Shi, J.
Deposit date:2024-02-03
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (3.97 Å)
Cite:NMR analysis of a loop-bulge structure of UUCGA pentaloop.
Biochem.Biophys.Res.Commun., 691, 2024
7LGU
DownloadVisualize
BU of 7lgu by Molmil
Structure of human prestin in the presence of NaCl
Descriptor: CHLORIDE ION, CHOLESTEROL, DECANE, ...
Authors:Ge, J, Gouaux, E.
Deposit date:2021-01-21
Release date:2021-08-25
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Molecular mechanism of prestin electromotive signal amplification.
Cell, 184, 2021
6YW4
DownloadVisualize
BU of 6yw4 by Molmil
HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with N-oxalylglycine (NOG) and a RaPID-derived silent allosteric cyclic peptide 3C (14-mer)
Descriptor: Egl nine homolog 1, MANGANESE (II) ION, N-OXALYLGLYCINE, ...
Authors:Chowdhury, R, Schofield, C.J.
Deposit date:2020-04-29
Release date:2020-12-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.528 Å)
Cite:Use of cyclic peptides to induce crystallization: case study with prolyl hydroxylase domain 2.
Sci Rep, 10, 2020
7LGW
DownloadVisualize
BU of 7lgw by Molmil
Structure of human Prestin in nanodisc in the presence of NaCl
Descriptor: CHLORIDE ION, CHOLESTEROL, DECANE, ...
Authors:Ge, J, Gouaux, E.
Deposit date:2021-01-21
Release date:2021-08-25
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Molecular mechanism of prestin electromotive signal amplification.
Cell, 184, 2021
7LH2
DownloadVisualize
BU of 7lh2 by Molmil
Structure of human prestin in the presence of sodium salicylate and sodium sulfate
Descriptor: 2-HYDROXYBENZOIC ACID, CHOLESTEROL, Prestin
Authors:Ge, J, Gouaux, E.
Deposit date:2021-01-21
Release date:2021-08-25
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:Molecular mechanism of prestin electromotive signal amplification.
Cell, 184, 2021
7LH3
DownloadVisualize
BU of 7lh3 by Molmil
Structure of human prestin in the presence of sodium sulfate
Descriptor: Prestin
Authors:Ge, J, Gouaux, E.
Deposit date:2021-01-21
Release date:2021-08-25
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Molecular mechanism of prestin electromotive signal amplification.
Cell, 184, 2021
6ZCN
DownloadVisualize
BU of 6zcn by Molmil
Crystal structure of YTHDC1 with m6A
Descriptor: N6-METHYLADENOSINE-5'-MONOPHOSPHATE, SULFATE ION, YTHDC1
Authors:Bedi, R.K, Huang, D, Wiedmer, L, Caflisch, A.
Deposit date:2020-06-11
Release date:2020-07-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Atomistic and Thermodynamic Analysis of N6-Methyladenosine (m 6 A) Recognition by the Reader Domain of YTHDC1.
J Chem Theory Comput, 17, 2021
5VXO
DownloadVisualize
BU of 5vxo by Molmil
Crystal Structure Analysis of human CLYBL in complex with propionyl-CoA
Descriptor: 1,2-ETHANEDIOL, Citrate lyase subunit beta-like protein, mitochondrial, ...
Authors:Shen, H.
Deposit date:2017-05-23
Release date:2017-11-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.266 Å)
Cite:The Human Knockout Gene CLYBL Connects Itaconate to Vitamin B12.
Cell, 171, 2017
3HBL
DownloadVisualize
BU of 3hbl by Molmil
Crystal Structure of S. aureus Pyruvate Carboxylase T908A Mutant
Descriptor: 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL, ADENOSINE-5'-DIPHOSPHATE, MANGANESE (II) ION, ...
Authors:Tong, L, Yu, L.P.C.
Deposit date:2009-05-04
Release date:2009-06-30
Last modified:2021-10-13
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:A Symmetrical Tetramer for S. aureus Pyruvate Carboxylase in Complex with Coenzyme A.
Structure, 17, 2009
8XC1
DownloadVisualize
BU of 8xc1 by Molmil
C. elegans SID1 in complex with dsRNA
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Gong, D.S.
Deposit date:2023-12-07
Release date:2024-06-05
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.21 Å)
Cite:Structural basis for double-stranded RNA recognition by SID1.
Nucleic Acids Res., 52, 2024
8Y6C
DownloadVisualize
BU of 8y6c by Molmil
Norovirus GII.10 P domain and 2'-FL (powder)
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GII.10 norovirus P domain in complex with 2'FL (powder), ...
Authors:Hansman, G, Tame, J.R.H, Kher, G, Pancera, M.
Deposit date:2024-02-02
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Norovirus GII.10 P domain and 2'-FL (powder)
To Be Published
8YZ6
DownloadVisualize
BU of 8yz6 by Molmil
SARS-CoV-2 Spike (BA.1) in complex with Fab of JH-8B
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab heavy chain of JH-8B, ...
Authors:Chen, X, Wu, Y.-M.
Deposit date:2024-04-06
Release date:2024-06-05
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (4.55 Å)
Cite:The presence of broadly neutralizing anti-SARS-CoV-2 RBD antibodies elicited by primary series and booster dose of COVID-19 vaccine.
Plos Pathog., 20, 2024
5VEO
DownloadVisualize
BU of 5veo by Molmil
Murine ectonucleotide pyrophosphatase / phosphodiesterase 5 (ENPP5, NPP5), inactive (T72A), in complex with AMP
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE MONOPHOSPHATE, ...
Authors:Gorelik, A, Randriamihaja, A, Illes, K, Nagar, B.
Deposit date:2017-04-05
Release date:2017-09-20
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:A key tyrosine substitution restricts nucleotide hydrolysis by the ectoenzyme NPP5.
FEBS J., 284, 2017
8X8G
DownloadVisualize
BU of 8x8g by Molmil
Crystal structure of EndoSz mutant D234M, from Streptococcus equi subsp. Zooepidemicus Sz105, in complex with oligosaccharide G2S2-oxazoline
Descriptor: 2-METHYL-4,5-DIHYDRO-(1,2-DIDEOXY-ALPHA-D-GLUCOPYRANOSO)[2,1-D]-1,3-OXAZOLE, CALCIUM ION, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose, ...
Authors:Guan, H.H, Lin, C.C, Hsieh, Y.C, Chen, C.J.
Deposit date:2023-11-27
Release date:2024-07-03
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structure-Based High-Efficiency Homogeneous Antibody Platform by Endoglycosidase Sz Provides Insights into Its Transglycosylation Mechanism.
Jacs Au, 4, 2024
8Y5V
DownloadVisualize
BU of 8y5v by Molmil
GII.4 Sydney PD and 2'-FL
Descriptor: 1,2-ETHANEDIOL, GII.4 Sydney PD in complex with 2'-FL (powder), alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
Authors:Hansman, G, Tame, J.R.H, Kher, G, Pancera, M.
Deposit date:2024-02-01
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:GII.4 Sydney PD and 2'-FL
To Be Published
1MGV
DownloadVisualize
BU of 1mgv by Molmil
Crystal Structure of the R391A Mutant of 7,8-Diaminopelargonic Acid Synthase
Descriptor: 7,8-diamino-pelargonic acid aminotransferase, ISOPROPYL ALCOHOL, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Eliot, A.C, Sandmark, J, Schneider, G, Kirsch, J.F.
Deposit date:2002-08-16
Release date:2002-11-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Dual-Specific Active Site of 7,8-Diaminopelargonic Acid Synthase and the Effect of the R391A Mutation
Biochemistry, 41, 2002
8XS3
DownloadVisualize
BU of 8xs3 by Molmil
Structure of MPXV B6 and D68 fab complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, D68_heavy chain, ...
Authors:wu, L.L, Sun, J.Q.
Deposit date:2024-01-08
Release date:2024-06-12
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Two noncompeting human neutralizing antibodies targeting MPXV B6 show protective effects against orthopoxvirus infections.
Nat Commun, 15, 2024
8YVV
DownloadVisualize
BU of 8yvv by Molmil
The Crystal Structure of BTK from Biortus
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Wang, F, Cheng, W, Yuan, Z, Lin, D, Pan, W.
Deposit date:2024-03-29
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The Crystal Structure of BTK from Biortus.
To Be Published
4O5E
DownloadVisualize
BU of 4o5e by Molmil
Structure of human DNA polymerase complexed with N7MG in the template base paired with incoming non-hydrolyzable TTP
Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*(FMG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ...
Authors:Koag, M.C, Lee, S.
Deposit date:2013-12-19
Release date:2014-07-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.532 Å)
Cite:Transition-state destabilization reveals how human DNA polymerase beta proceeds across the chemically unstable lesion N7-methylguanine.
Nucleic Acids Res., 42, 2014
4O5K
DownloadVisualize
BU of 4o5k by Molmil
Structure of human DNA polymerase complexed with N7MG in the template base paired with incoming non-hydrolyzable CTP
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*(FMG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ...
Authors:Koag, M.C, Lee, S.
Deposit date:2013-12-19
Release date:2014-07-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.058 Å)
Cite:Transition-state destabilization reveals how human DNA polymerase beta proceeds across the chemically unstable lesion N7-methylguanine.
Nucleic Acids Res., 42, 2014
5VMM
DownloadVisualize
BU of 5vmm by Molmil
Staphylococcus aureus IsdB bound to human hemoglobin
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, Iron-regulated cell wall-anchored protein, ...
Authors:Bowden, C.F, Chan, A.C, Murphy, M.E.
Deposit date:2017-04-27
Release date:2017-11-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structure-function analyses reveal key features in Staphylococcus aureus IsdB-associated unfolding of the heme-binding pocket of human hemoglobin.
J. Biol. Chem., 293, 2018
6YX5
DownloadVisualize
BU of 6yx5 by Molmil
Structure of DrrA from Legionella pneumophilia in complex with human Rab8a
Descriptor: MAGNESIUM ION, Multifunctional virulence effector protein DrrA, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Schneider, S, Du, J, von Wrisberg, M.K, Lang, K, Itzen, A.
Deposit date:2020-04-30
Release date:2020-12-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Rab1-AMPylation by Legionella DrrA is allosterically activated by Rab1.
Nat Commun, 12, 2021
4V5G
DownloadVisualize
BU of 4v5g by Molmil
The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
Descriptor: 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Schmeing, T.M, Voorhees, R.M, Ramakrishnan, V.
Deposit date:2009-09-01
Release date:2014-07-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA.
Science, 326, 2009

222415

数据于2024-07-10公开中

PDB statisticsPDBj update infoContact PDBjnumon