PDB: 46200 resultsInfo pagesStatus searchChemie searchBIRD

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6GCM	Escherichia coli DPS Descriptor: DNA protection during starvation protein Authors: Kovalenko, V.V, Loiko, N.G, Tereshkin, E.V, Tereshkina, K.B, Chulichkov, A.L, Popov, A.N, Krupyanskii, Y.F. Deposit date: 2018-04-18 Release date: 2019-05-01 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Escherichia coli DPS To Be Published
2PA8	X-Ray Crystal Structure of the D/L Subcomplex of the Sulfolobus Solfataricus RNA polymerase Descriptor: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, FE3-S4 CLUSTER, ... Authors: Hirata, A, Murakami, K.S. Deposit date: 2007-03-27 Release date: 2008-02-05 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.76 Å) Cite: The X-ray crystal structure of RNA polymerase from Archaea. Nature, 451, 2008
2JW5	Polymerase Lambda BRCT domain Descriptor: DNA polymerase lambda Authors: Mueller, G.A, Moon, A.F, DeRose, E.F, Pedersen, L.C, London, R.E. Deposit date: 2007-10-05 Release date: 2007-10-23 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Polymerase Lambda BRCT domain To be Published
3IHQ	Crystal Structure of Reduced C10S Spx in Complex with the Alpha C-terminal Domain of RNA Polymeras Descriptor: DNA-directed RNA polymerase subunit alpha, IMIDAZOLE, Regulatory protein spx Authors: Newberry, K.J, Brennan, R.G. Deposit date: 2009-07-30 Release date: 2010-02-02 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Promoter recognition by a complex of Spx and the C-terminal domain of the RNA polymerase alpha subunit. Plos One, 5, 2010
5OD6	Crystal structure of Smad3-MH1 bound to the GGCGC site. Descriptor: DNA (5'-D(P*TP*GP*CP*AP*GP*GP*CP*GP*CP*GP*CP*CP*TP*GP*CP*A)-3'), Mothers against decapentaplegic homolog 3, ZINC ION Authors: Kaczmarska, Z, Marquez, J.A, Macias, M.J. Deposit date: 2017-07-04 Release date: 2017-11-15 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis for genome wide recognition of 5-bp GC motifs by SMAD transcription factors. Nat Commun, 8, 2017
2CSF	Solution structure of the second CUT domain of human SATB2 Descriptor: DNA-binding protein SATB2 Authors: Inoue, K, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-05-21 Release date: 2005-11-21 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the second CUT domain of human SATB2 To be Published
4XUJ	Nucleosome core particle containing adducts from treatment with a thiomorpholine-substituted [(eta-6-p-cymene)Ru(3-hydroxy-2-pyridone)Cl] compound Descriptor: DNA (145-MER), Histone H2A, Histone H2B 1.1, ... Authors: Adhireksan, Z, Davey, C.A. Deposit date: 2015-01-26 Release date: 2016-01-27 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.18 Å) Cite: Contrasting Cytotoxicity and Reactivity of RuII-Arene Complexes of Morpholine vs Thiomorpholine Substituted 3-Hydroxy-2-pyridone Ligands To Be Published
8GPN	Human menin in complex with H3K79Me2 nucleosome Descriptor: DNA (177-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Lin, J, Yu, D, Lam, W.H, Dang, S, Zhai, Y, Li, X.D. Deposit date: 2022-08-26 Release date: 2023-02-15 Last modified: 2023-03-01 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Menin "reads" H3K79me2 mark in a nucleosomal context. Science, 379, 2023
1EF4	SOLUTION STRUCTURE OF THE ESSENTIAL RNA POLYMERASE SUBUNIT RPB10 FROM METHANOBACTERIUM THERMOAUTOTROPHICUM Descriptor: DNA-DIRECTED RNA POLYMERASE, ZINC ION Authors: Mackereth, C.D, Arrowsmith, C.H, Edwards, A.M, Mcintosh, L.P, Northeast Structural Genomics Consortium (NESG) Deposit date: 2000-02-07 Release date: 2000-06-14 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum. Proc.Natl.Acad.Sci.USA, 97, 2000
1NIK	Wild Type RNA Polymerase II Descriptor: DNA-directed RNA polymerase I, II and III 23 kDa polypeptide, DNA-directed RNA polymerase II, ... Authors: Bushnell, D.A, Kornberg, R.D. Deposit date: 2002-12-24 Release date: 2003-04-29 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (4.1 Å) Cite: Complete, 12-subunit RNA Polymerase II at 4.1-A resolution: implications for the initiation of transcription. Proc.Natl.Acad.Sci.USA, 100, 2003
2KRC	Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase Descriptor: DNA-directed RNA polymerase subunit delta Authors: Motackova, V, Sanderova, H, Zidek, L, Novacek, J, Padrta, P, Svenkova, A, Jonak, J, Krasny, L, Sklenar, V. Deposit date: 2009-12-16 Release date: 2010-04-07 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the N-terminal domain of Bacillus subtilis delta subunit of RNA polymerase and its classification based on structural homologs Proteins, 78, 2010
9DR1	E. coli RNA polymerase consensus volume with a bound fluoride riboswitch in the ligand-bound state Descriptor: DNA (30-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Porta, J.C, Ellinger, E, Liu, Y, Walter, N.G. Deposit date: 2024-09-24 Release date: 2024-10-09 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis of RNA-mediated regulation of transcriptional pausing. To Be Published
7EGH	TFIID lobe C subcomplex Descriptor: DNA (45-MER), Transcription initiation factor TFIID subunit 1, Transcription initiation factor TFIID subunit 2, ... Authors: Chen, X, Wu, Z, Li, J, Zhao, D, Xu, Y. Deposit date: 2021-03-24 Release date: 2021-05-12 Method: ELECTRON MICROSCOPY (3.04 Å) Cite: Structural insights into preinitiation complex assembly on core promoters. Science, 372, 2021
5AFQ	Crystal structure of RPC62 - RPC32 beta Descriptor: DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC3, RPC32 BETA (RPC7L) Authors: Fribourg, S. Deposit date: 2015-01-23 Release date: 2015-10-07 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (7 Å) Cite: Structural Analysis of Human Rpc32Beta - Rpc62 Complex. J.Struct.Biol., 192, 2015
4NC8	N-terminal domain of delta-subunit of RNA polymerase complexed with nickel ions Descriptor: DNA-directed RNA polymerase subunit delta, NICKEL (II) ION Authors: Demo, G, Papouskova, V, Komarek, J, Sanderova, H, Rabatinova, A, Krasny, L, Zidek, L, Sklenar, V, Wimmerova, M. Deposit date: 2013-10-24 Release date: 2014-07-02 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.17 Å) Cite: X-ray vs. NMR structure of N-terminal domain of delta-subunit of RNA polymerase. J.Struct.Biol., 187, 2014
2LRX	RNA structural dynamics are modulated through anti-folding by chaperones Descriptor: DNA-binding protein stpA Authors: Fuertig, B, Doetsch, M, Stampfl, S, Kontaxis, G, Schroeder, R. Deposit date: 2012-04-15 Release date: 2013-04-17 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Chaperones modulate RNA structural dynamics through anti-folding To be Published
6MEW	RFXANK ankyrin repeats in complex with a RFX7 peptide Descriptor: DNA-binding protein RFXANK, RFX7 peptide, UNKNOWN ATOM OR ION Authors: Tempel, W, Xu, C, Dong, A, Li, Y, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) Deposit date: 2018-09-07 Release date: 2018-10-03 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.78 Å) Cite: RFXANK ankyrin repeats in complex with a RFX7 peptide to be published
7DTI	Solution structure of the complex between RNA polymerase subunit RPB6 and TFIIH p62 PH domain Descriptor: DNA-directed RNA polymerases I, II, and III subunit RPABC2, ... Authors: Okuda, M, Nishimura, Y. Deposit date: 2021-01-05 Release date: 2022-08-10 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Three human RNA polymerases interact with TFIIH via a common RPB6 subunit. Nucleic Acids Res., 50, 2022
7DTH	Solution structure of RPB6, common subunit of RNA polymerases I, II, and III Descriptor: DNA-directed RNA polymerases I, II, and III subunit RPABC2 Authors: Okuda, M, Nishimura, Y. Deposit date: 2021-01-05 Release date: 2022-01-19 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Three human RNA polymerases interact with TFIIH via a common RPB6 subunit. Nucleic Acids Res., 50, 2022
2JZB	Solution structure of the complex between E.coli NusA-AR2 and RNAP-aCTD Descriptor: DNA-directed RNA polymerase subunit alpha, Transcription elongation protein nusA Authors: Prasch, S, Schweimer, K, Roesch, P. Deposit date: 2008-01-02 Release date: 2009-04-28 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: structural basis of transcription elongation control: the NusA-aCTD complex To be Published
5ZA3	Structure of a C-terminal S. mutans response regulator VicR domain Descriptor: DNA-binding response regulator Authors: Cai, Y.F, Hu, X.J, San, J.Y, Han, A.D. Deposit date: 2018-02-06 Release date: 2019-02-06 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structure of a C-terminal S. mutans response regulator VicR domain To Be Published
6O96	Dot1L bound to the H2BK120 Ubiquitinated nucleosome Descriptor: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... Authors: Valencia-Sanchez, M.I, De Ioannes, P.E, Miao, W, Vasilyev, N, Chen, R, Nudler, E, Armache, J.-P, Armache, K.-J. Deposit date: 2019-03-13 Release date: 2019-04-24 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural Basis of Dot1L Stimulation by Histone H2B Lysine 120 Ubiquitination. Mol.Cell, 74, 2019
2LFH	Solution NMR Structure of the Helix-loop-Helix Domain of Human ID3 Protein, Northeast Structural Genomics Consortium Target HR3111A Descriptor: DNA-binding protein inhibitor ID-3 Authors: Eletsky, A, Wang, D, Kohan, E, Janjua, H, Acton, T.B, Xiao, R, Everett, J.K, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG) Deposit date: 2011-06-30 Release date: 2011-07-27 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution NMR Structure of the Helix-loop-Helix Domain of Human ID3 Protein, Northeast Structural Genomics Consortium Target HR3111A To be Published
5YC2	Crystal structure of inner membrane protein Bqt4 in complex with telomeric protein Rap1 Descriptor: DNA-binding protein rap1, Ubiquitin-like protein SMT3,Bouquet formation protein 4 Authors: Chen, Y, Hu, C. Deposit date: 2017-09-06 Release date: 2018-11-14 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.704 Å) Cite: Structural insights into chromosome attachment to the nuclear envelope by an inner nuclear membrane protein Bqt4 in fission yeast. Nucleic Acids Res., 47, 2019
5NM9	Crystal structure of the placozoa Trichoplax adhaerens Smad4-MH1 bound to the GGCGC site. Descriptor: DNA (5'-D(P*AP*TP*GP*CP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*GP*CP*AP*T)-3'), Mothers against decapentaplegic homolog, ZINC ION Authors: Kaczmarska, Z, Freier, R, Marquez, J.A, Macias, M.J. Deposit date: 2017-04-05 Release date: 2017-11-15 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Structural basis for genome wide recognition of 5-bp GC motifs by SMAD transcription factors. Nat Commun, 8, 2017

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