PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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1KXK	Crystal Structure of a RNA Molecule Containing Domain 5 and 6 of the Yeast ai5g Group II Self-splicing Intron Descriptor: MAGNESIUM ION, ai5g group II Self-splicing intron Authors: Zhang, L, Doudna, J.A. Deposit date: 2002-01-31 Release date: 2002-03-22 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural insights into group II intron catalysis and branch-site selection. Science, 295, 2002
2QQP	Crystal Structure of Authentic Providence Virus Descriptor: CALCIUM ION, RNA (5'-R(*UP*UP*UP*U)-3'), p81 Authors: Speir, J.A, Taylor, D.J, Johnson, J.E. Deposit date: 2007-07-26 Release date: 2009-01-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Evolution in action: N and C termini of subunits in related T = 4 viruses exchange roles as molecular switches. Structure, 18, 2010
6IJN	The D295N mutant of the N6-methyl-AMP deaminase from Arabidopsis thaliana complexed with N6m-AMP Descriptor: Adenosine/AMP deaminase family protein, N6-METHYLADENOSINE-5'-MONOPHOSPHATE Authors: Xie, W, Jia, Q. Deposit date: 2018-10-10 Release date: 2019-02-06 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Alternative conformation induced by substrate binding for Arabidopsis thalianaN6-methyl-AMP deaminase. Nucleic Acids Res., 47, 2019
6B1G	Solution structure of TDP-43 N-terminal domain dimer. Descriptor: TAR DNA-binding protein 43, S48E Mutant, Y4R Mutant Authors: Naik, M.T, Wang, A, Conicella, A, Fawzi, N.L. Deposit date: 2017-09-18 Release date: 2018-02-28 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: A single N-terminal phosphomimic disrupts TDP-43 polymerization, phase separation, and RNA splicing. EMBO J., 37, 2018
1R5D	X-ray structure of bovine seminal ribonuclease swapping dimer from a new crystal form Descriptor: Ribonuclease, seminal Authors: Merlino, A, Vitagliano, L, Sica, F, Zagari, A, Mazzarella, L. Deposit date: 2003-10-10 Release date: 2004-04-13 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Population shift vs induced fit: The case of bovine seminal ribonuclease swapping dimer Biopolymers, 73, 2004
1F60	CRYSTAL STRUCTURE OF THE YEAST ELONGATION FACTOR COMPLEX EEF1A:EEF1BA Descriptor: ELONGATION FACTOR EEF1A, ELONGATION FACTOR EEF1BA Authors: Andersen, G.R, Pedersen, L, Valente, L, Kinzy, T.G, Nyborg, J. Deposit date: 2000-06-19 Release date: 2000-07-04 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.67 Å) Cite: Structural basis for nucleotide exchange and competition with tRNA in the yeast elongation factor complex eEF1A:eEF1Balpha. Mol.Cell, 6, 2000
2IJH	Crystal structure analysis of ColE1 ROM mutant F14W Descriptor: Regulatory protein rop Authors: Ladner, J.E. Deposit date: 2006-09-29 Release date: 2007-10-16 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.8 Å) Cite: New crystal structures of ColE1 Rom and variants resulting from mutation of a surface exposed residue: Implications for RNA-recognition. Proteins, 72, 2008
2IJJ	Crystal structure analysis of ColE1 ROM mutant F14Y Descriptor: Regulatory protein rop Authors: Ladner, J.E. Deposit date: 2006-09-29 Release date: 2007-10-16 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: New crystal structures of ColE1 Rom and variants resulting from mutation of a surface exposed residue: Implications for RNA-recognition. Proteins, 72, 2008
5EUQ	Crystal structure of an engineered construct of phosphatidylinositol 4 kinase III beta with a potent and selective inhibitor in complex with GDP loaded Rab11 Descriptor: GUANOSINE-5'-DIPHOSPHATE, Phosphatidylinositol 4-kinase beta, Ras-related protein Rab-11A, ... Authors: Burke, J.E, Fowler, M.L. Deposit date: 2015-11-19 Release date: 2016-02-24 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Design and Structural Characterization of Potent and Selective Inhibitors of Phosphatidylinositol 4 Kinase III beta. J.Med.Chem., 59, 2016
2X7K	The crystal structure of PPIL1 in complex with cyclosporine A suggests a binding mode for SKIP Descriptor: CADMIUM ION, CYCLOSPORIN A, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 1, ... Authors: Stegmann, C.M, Luehrmann, R, Wahl, M.C. Deposit date: 2010-03-01 Release date: 2010-03-23 Last modified: 2019-10-16 Method: X-RAY DIFFRACTION (1.15 Å) Cite: The Crystal Structure of Ppil1 Bound to Cyclosporine a Suggests a Binding Mode for a Linear Epitope of the Skip Protein. Plos One, 5, 2010
1R5C	X-ray structure of the complex of Bovine seminal ribonuclease swapping dimer with d(CpA) Descriptor: 2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE-3',5'-MONOPHOSPHATE, Ribonuclease, seminal Authors: Merlino, A, Vitagliano, L, Sica, F, Zagari, A, Mazzarella, L. Deposit date: 2003-10-10 Release date: 2004-04-13 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Population shift vs induced fit: The case of bovine seminal ribonuclease swapping dimer Biopolymers, 73, 2004
1R5T	The Crystal Structure of Cytidine Deaminase CDD1, an Orphan C to U editase from Yeast Descriptor: Cytidine deaminase, ZINC ION Authors: Xie, K, Sowden, M.P, Dance, G.S.C, Torelli, A.T, Smith, H.C, Wedekind, J.E. Deposit date: 2003-10-13 Release date: 2004-05-25 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: The structure of a yeast RNA-editing deaminase provides insight into the fold and function of activation-induced deaminase and APOBEC-1. Proc.Natl.Acad.Sci.Usa, 101, 2004
6IJP	The structure of the ADAL-IMP complex Descriptor: Adenosine/AMP deaminase family protein, INOSINIC ACID, ZINC ION Authors: Xie, W, Jia, Q. Deposit date: 2018-10-11 Release date: 2019-02-06 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Alternative conformation induced by substrate binding for Arabidopsis thalianaN6-methyl-AMP deaminase. Nucleic Acids Res., 47, 2019
1L1N	POLIOVIRUS 3C PROTEINASE Descriptor: Genome polyprotein: Picornain 3C Authors: Mosimann, S.C, Chernaia, M.M, Sia, S, Plotch, S, James, M.N.G. Deposit date: 2002-02-19 Release date: 2002-04-10 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Refined X-ray crystallographic structure of the poliovirus 3C gene product. J.Mol.Biol., 273, 1997
6IJM	Apo structure of the N6-methyl-AMP Deaminase from Arabidopsis thaliana Descriptor: Adenosine/AMP deaminase family protein, ZINC ION Authors: Xie, W, Jia, Q. Deposit date: 2018-10-10 Release date: 2019-02-06 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.016 Å) Cite: Alternative conformation induced by substrate binding for Arabidopsis thalianaN6-methyl-AMP deaminase. Nucleic Acids Res., 47, 2019
7R8J	Crystal structure of Pseudooceanicola lipolyticus Argonaute bound to 5' p guide DNA in the presence of Mg2+ Descriptor: Argonaute, DNA (5'-D(*TP*TP*AP*CP*TP*GP*CP*AP*CP*AP*GP*GP*TP*GP*AP*CP*GP*A)-3') Authors: Shin, Y, Murakami, K.S. Deposit date: 2021-06-26 Release date: 2022-07-06 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nat Commun, 13, 2022
7R8F	Crystal structure of Pseudooceanicola lipolyticus Argonaute Descriptor: Argonaute Authors: Shin, Y, Murakami, K.S. Deposit date: 2021-06-26 Release date: 2022-07-06 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (3.16 Å) Cite: Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nat Commun, 13, 2022
7R8K	Crystal structure of Pseudooceanicola lipolyticus Argonaute (SeMet labeled protein) Descriptor: Argonaute Authors: Shin, Y, Murakami, K.S. Deposit date: 2021-06-26 Release date: 2022-07-06 Last modified: 2022-12-28 Method: X-RAY DIFFRACTION (3.28 Å) Cite: Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nat Commun, 13, 2022
7R8G	Crystal structure of Pseudooceanicola lipolyticus Argonaute bound to 5' OH guide DNA Descriptor: Argonaute, DNA (5'-D(*TP*AP*CP*TP*GP*CP*AP*CP*AP*GP*GP*TP*GP*AP*CP*GP*A)-3') Authors: Shin, Y, Murakami, K.S. Deposit date: 2021-06-26 Release date: 2022-07-06 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nat Commun, 13, 2022
7R8H	Crystal structure of Pseudooceanicola lipolyticus Argonaute bound to 5' p guide DNA Descriptor: Argonaute, DNA (5'-D(*TP*TP*AP*CP*TP*GP*CP*AP*CP*AP*GP*GP*TP*GP*AP*CP*GP*A)-3') Authors: Shin, Y, Murakami, K.S. Deposit date: 2021-06-26 Release date: 2022-07-06 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.54 Å) Cite: Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nat Commun, 13, 2022
1D6A	STRUCTURE OF POKEWEED ANTIVIRAL PROTEIN COMPLEXED WITH GUANINE Descriptor: GUANINE, POKEWEED ANTIVIRAL PROTEIN Authors: Kurinov, I.V, Rajamohan, F, Venkatachalam, T.K, Uckun, F.M. Deposit date: 1999-10-12 Release date: 1999-12-16 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.1 Å) Cite: X-ray crystallographic analysis of the structural basis for the interaction of pokeweed antiviral protein with guanine residues of ribosomal RNA. Protein Sci., 8, 1999
2KXM	Solution NMR Structure of the 27 nucleotide engineered neomycin sensing riboswitch RNA-ribostmycin complex Descriptor: RIBOSTAMYCIN, RNA (27-MER) Authors: Duchardt-Ferner, E, Weigand, J.E, Ohlenschlager, O, Schmidtke, S.R, Suess, B, Wohnert, J. Deposit date: 2010-05-10 Release date: 2011-04-20 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Highly modular structure and ligand binding by conformational capture in a minimalistic riboswitch. Angew.Chem.Int.Ed.Engl., 49, 2010
7GQU	Crystal Structure of Werner helicase fragment 517-945 in covalent complex with N-[(E,1S)-1-cyclopropyl-3-methylsulfonylprop-2-enyl]-2-(1,1-difluoroethyl)-4-phenoxypyrimidine-5-carboxamide Descriptor: ADENOSINE-5'-DIPHOSPHATE, Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN, GLYCEROL, ... Authors: Classen, M, Benz, J, Brugger, D, Tagliente, O, Rudolph, M.G. Deposit date: 2023-10-19 Release date: 2024-05-01 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Chemoproteomic discovery of a covalent allosteric inhibitor of WRN helicase. Nature, 629, 2024
5DMA	Crystal structure of C-terminal tudor domain in PcrA/UvrD helicase Descriptor: ATP-dependent DNA helicase PcrA Authors: Lin, C.L, Dillingham, M, Wigley, D. Deposit date: 2015-09-08 Release date: 2016-09-28 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.53 Å) Cite: The structure and function of an RNA polymerase interaction domain in the PcrA/UvrD helicase. Nucleic Acids Res., 45, 2017
3HD4	MHV Nucleocapsid Protein NTD Descriptor: Nucleoprotein Authors: Giedroc, D.P, Keane, S.C, Dann III, C.E. Deposit date: 2009-05-06 Release date: 2009-11-17 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.747 Å) Cite: Coronavirus N Protein N-Terminal Domain (NTD) Specifically Binds the Transcriptional Regulatory Sequence (TRS) and Melts TRS-cTRS RNA Duplexes. J.Mol.Biol., 394, 2009

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