Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1MEN
DownloadVisualize
BU of 1men by Molmil
complex structure of human GAR Tfase and substrate beta-GAR
Descriptor: GLYCINAMIDE RIBONUCLEOTIDE, Phosphoribosylglycinamide formyltransferase
Authors:Zhang, Y, Desharnais, J, Greasley, S.E, Beardsley, G.P, Boger, D.L, Wilson, I.A.
Deposit date:2002-08-08
Release date:2002-12-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Crystal structures of human GAR Tfase of low and high pH and with substrate beta-GAR
Biochemistry, 41, 2002
8C3W
DownloadVisualize
BU of 8c3w by Molmil
Crystal structure of a computationally designed heme binding protein, dnHEM1
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Ortmayer, M, Levy, C.
Deposit date:2022-12-29
Release date:2023-07-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Design of Heme Enzymes with a Tunable Substrate Binding Pocket Adjacent to an Open Metal Coordination Site.
J.Am.Chem.Soc., 145, 2023
3LTD
DownloadVisualize
BU of 3ltd by Molmil
X-ray structure of a non-biological ATP binding protein determined at 2.8 A by multi-wavelength anomalous dispersion
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP BINDING PROTEIN-DX, CHLORIDE ION, ...
Authors:Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C.
Deposit date:2010-02-15
Release date:2010-09-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins.
Biochemistry, 49, 2010
3LTC
DownloadVisualize
BU of 3ltc by Molmil
X-ray structure of a non-biological ATP binding protein determined in the presence of 10 mM ATP at 2.0 A by multi-wavelength anomalous dispersion
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP BINDING PROTEIN-DX, CHLORIDE ION, ...
Authors:Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C.
Deposit date:2010-02-15
Release date:2010-09-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins.
Biochemistry, 49, 2010
3LTA
DownloadVisualize
BU of 3lta by Molmil
Crystal structure of a non-biological ATP binding protein with a TYR-PHE mutation within the ligand binding domain
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP BINDING PROTEIN-DX, CHLORIDE ION, ...
Authors:Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C.
Deposit date:2010-02-15
Release date:2010-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins.
Biochemistry, 49, 2010
7SMJ
DownloadVisualize
BU of 7smj by Molmil
F2N structure, protein design with deep learning
Descriptor: AI-designed TIM-barrel F2N
Authors:Mathews, I.I, Anand-Achim, N, Huang, P.
Deposit date:2021-10-26
Release date:2022-03-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Protein sequence design with a learned potential.
Nat Commun, 13, 2022
8TNO
DownloadVisualize
BU of 8tno by Molmil
UNC_239 from Chroma generative model
Descriptor: UNC_239
Authors:Ng-Thow-Hing, C, Van Vlack, E.R, Lord, D.M.
Deposit date:2023-08-02
Release date:2023-11-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Illuminating protein space with a programmable generative model.
Nature, 623, 2023
8TNM
DownloadVisualize
BU of 8tnm by Molmil
UNC_079 from Chroma generative model
Descriptor: UNC_079
Authors:Ng-Thow-Hing, C, Van Vlack, E.R, Lord, D.M.
Deposit date:2023-08-02
Release date:2023-11-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Illuminating protein space with a programmable generative model.
Nature, 623, 2023
8CUS
DownloadVisualize
BU of 8cus by Molmil
Accurate computational design of genetically encoded 3D protein crystals
Descriptor: I432-1(NaCl) Chain A, I432-1(NaCl) Chain B
Authors:Bera, A.K, Li, Z, Baker, D.
Deposit date:2022-05-17
Release date:2023-11-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.98 Å)
Cite:Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
8CUT
DownloadVisualize
BU of 8cut by Molmil
Accurate computational design of genetically encoded 3D protein crystals
Descriptor: I432-1(Imd) Chain A, I432-1(Imd) Chain B
Authors:Bera, A.K, Li, Z, Baker, D.
Deposit date:2022-05-17
Release date:2023-11-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (4 Å)
Cite:Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
8CUX
DownloadVisualize
BU of 8cux by Molmil
Accurate computational design of genetically encoded 3D protein crystals
Descriptor: R3-1 Chain B
Authors:Bera, A.K, Natterman, U, Baker, D.
Deposit date:2022-05-17
Release date:2023-11-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
8CWZ
DownloadVisualize
BU of 8cwz by Molmil
Accurate computational design of genetically encoded 3D protein crystals
Descriptor: I432-1-X3 Chain A, I432-1-X3 Chain B
Authors:Bera, A.K, Li, Z, Baker, D.
Deposit date:2022-05-19
Release date:2023-11-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (5.53 Å)
Cite:Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
8CWS
DownloadVisualize
BU of 8cws by Molmil
Accurate computational design of genetically encoded 3D protein crystals
Descriptor: F4132-2 Chain A, F4132-2 Chain B
Authors:Bera, A.K, Li, Z, Baker, D.
Deposit date:2022-05-19
Release date:2023-11-01
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (4.4 Å)
Cite:Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
8CWY
DownloadVisualize
BU of 8cwy by Molmil
Accurate computational design of genetically encoded 3D protein crystals
Descriptor: T32-15-1, T32-15-2
Authors:Li, Z, Borst, A.J, Baker, D.
Deposit date:2022-05-19
Release date:2023-11-01
Last modified:2023-12-20
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
7FAO
DownloadVisualize
BU of 7fao by Molmil
Top7 surface mutant K42A Q43A K46A K57S K58S, and I68R
Descriptor: MAGNESIUM ION, Top7 Surface mutant
Authors:Ito, Y, Makabe, K.
Deposit date:2021-07-07
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Surface Engineering of Top7 to Facilitate Structure Determination.
Int J Mol Sci, 23, 2022
2HYZ
DownloadVisualize
BU of 2hyz by Molmil
Crystal structure of an 8 repeat consensus TPR superhelix (orthorombic crystal form)
Descriptor: SAMARIUM (III) ION, SYNTHETIC CONSENSUS TPR PROTEIN
Authors:Kajander, T, Cortajarena, A.L, Regan, L.
Deposit date:2006-08-08
Release date:2008-02-19
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and stability of designed TPR protein superhelices: unusual crystal packing and implications for natural TPR proteins.
Acta Crystallogr.,Sect.D, 63, 2007
8C5U
DownloadVisualize
BU of 8c5u by Molmil
Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 8-mer RNA, pppGpGpUpApApApUpG (IC8)
Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Goovaerts, Q, Shen, J, Patel, S.S, Das, K.
Deposit date:2023-01-10
Release date:2023-08-30
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Structures illustrate step-by-step mitochondrial transcription initiation.
Nature, 622, 2023
8C5S
DownloadVisualize
BU of 8c5s by Molmil
Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 7-mer RNA, pppGpGpUpApApApU (IC7)
Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Goovaerts, Q, Shen, J, Patel, S.S, Das, K.
Deposit date:2023-01-10
Release date:2023-08-30
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.75 Å)
Cite:Structures illustrate step-by-step mitochondrial transcription initiation.
Nature, 622, 2023
2P6J
DownloadVisualize
BU of 2p6j by Molmil
Full-sequence computational design and solution structure of a thermostable protein variant
Descriptor: designed engrailed homeodomain variant UVF
Authors:Shah, P.S, Hom, G.K, Ross, S.A, Lassila, J.K, Crowhurst, K.A, Mayo, S.L.
Deposit date:2007-03-18
Release date:2007-08-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Full-sequence Computational Design and Solution Structure of a Thermostable Protein Variant.
J.Mol.Biol., 372, 2007
5WKP
DownloadVisualize
BU of 5wkp by Molmil
Crystal Structure of the Human mitochondrial Cysteine Desulfurase in complex with ISD11 and Iron-Sulfur Cluster Scaffold Protein ISCU1, and E. coli ACP1 protein at 3.15A
Descriptor: Acyl carrier protein, Cysteine desulfurase, mitochondrial, ...
Authors:Boniecki, M.T, Cygler, M.
Deposit date:2017-07-25
Release date:2017-11-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structure and functional dynamics of the mitochondrial Fe/S cluster synthesis complex.
Nat Commun, 8, 2017
7L5M
DownloadVisualize
BU of 7l5m by Molmil
Crystal Structure of the DiB-RM-split Protein
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Lipocalin family protein, SODIUM ION, ...
Authors:Bozhanova, N.G, Harp, J.M, Meiler, J.
Deposit date:2020-12-22
Release date:2021-10-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Computational redesign of a fluorogen activating protein with Rosetta.
Plos Comput.Biol., 17, 2021
7L5L
DownloadVisualize
BU of 7l5l by Molmil
Crystal structure of the DiB-RM protein
Descriptor: Lipocalin family protein, SULFATE ION
Authors:Bozhanova, N.G, Harp, J.M, Meiler, J.
Deposit date:2020-12-22
Release date:2021-10-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Computational redesign of a fluorogen activating protein with Rosetta.
Plos Comput.Biol., 17, 2021
7L5K
DownloadVisualize
BU of 7l5k by Molmil
Crystal structure of the DiB-RM protein
Descriptor: DODECYL-BETA-D-MALTOSIDE, ISOPROPYL ALCOHOL, Lipocalin family protein, ...
Authors:Bozhanova, N.G, Harp, J.M, Meiler, J.
Deposit date:2020-12-22
Release date:2021-10-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Computational redesign of a fluorogen activating protein with Rosetta.
Plos Comput.Biol., 17, 2021
2LR2
DownloadVisualize
BU of 2lr2 by Molmil
Designed IgG and lanthanide binding probe for solution NMR, MRI and luminescence microscopy
Descriptor: Immunoglobulin G-binding protein A
Authors:Barb, A.W, Ho, T.G, Prestegard, J.H.
Deposit date:2012-03-21
Release date:2012-09-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Lanthanide binding and IgG affinity construct: Potential applications in solution NMR, MRI, and luminescence microscopy.
Protein Sci., 21, 2012
7ONE
DownloadVisualize
BU of 7one by Molmil
Crystal structure of the self-assembled SAKe6BE designer protein
Descriptor: SAKe6BE
Authors:Wouters, S.M.L, Noguchi, H, Velpula, G, Clarke, D.E, Voet, A.R.D, De Feyter, S.
Deposit date:2021-05-25
Release date:2022-12-14
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:SAKe: Computationally Designed Modular Protein Building Blocks for Macromolecular Assemblies
To be published

222624

数据于2024-07-17公开中

PDB statisticsPDBj update infoContact PDBjnumon