Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8SM7
DownloadVisualize
BU of 8sm7 by Molmil
Air-oxidized G. y4 TruffO expressed from M9 minimal medium supplemented with Fe
Descriptor: Amidohydrolase 2, FE (III) ION, SODIUM ION
Authors:Liu, C, Rittle, J.
Deposit date:2023-04-25
Release date:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Bioinformatic Discovery of a Cambialistic Monooxygenase.
J.Am.Chem.Soc., 146, 2024
7RM3
DownloadVisualize
BU of 7rm3 by Molmil
Antibody 2E10.E9 in complex with P. vivax CSP peptide ANGAGNQPGANGAGNQPGANGAGGQAA
Descriptor: 2E10.E9 Fab heavy chain, 2E10.E9 Fab light chain, ACETATE ION, ...
Authors:Kucharska, I, Ivanochko, D, Julien, J.P.
Deposit date:2021-07-26
Release date:2022-01-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Structural basis of Plasmodium vivax inhibition by antibodies binding to the circumsporozoite protein repeats.
Elife, 11, 2022
7TZS
DownloadVisualize
BU of 7tzs by Molmil
Crystal structure of the E. coli thiM riboswitch in complex with quinoxalin-6-ylmethanamine (compound 17)
Descriptor: 1-(quinoxalin-6-yl)methanamine, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Nuthanakanti, A, Serganov, A.
Deposit date:2022-02-16
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:SHAPE-enabled fragment-based ligand discovery for RNA.
Proc.Natl.Acad.Sci.USA, 119, 2022
7TZR
DownloadVisualize
BU of 7tzr by Molmil
Crystal structure of the E. coli thiM riboswitch bound to N-methyl-1-(quinoxalin-6-yl)methanamine (compound 16)
Descriptor: MAGNESIUM ION, N-methyl-1-(quinoxalin-6-yl)methanamine, POTASSIUM ION, ...
Authors:Nuthanakanti, A, Serganov, A.
Deposit date:2022-02-16
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:SHAPE-enabled fragment-based ligand discovery for RNA.
Proc.Natl.Acad.Sci.USA, 119, 2022
7PQO
DownloadVisualize
BU of 7pqo by Molmil
Catalytic fragment of MASP-1 in complex with P1 site mutant ecotin
Descriptor: Ecotin, GLYCEROL, Mannan-binding lectin serine protease 1, ...
Authors:Harmat, V, Fodor, K, Heja, D.
Deposit date:2021-09-17
Release date:2022-05-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.39 Å)
Cite:Synergy of protease-binding sites within the ecotin homodimer is crucial for inhibition of MASP enzymes and for blocking lectin pathway activation.
J.Biol.Chem., 298, 2022
8ST5
DownloadVisualize
BU of 8st5 by Molmil
Streptococcus gordonii str. Challis Hsa bound to Neu5Ac
Descriptor: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose, SODIUM ION, Streptococcal hemagglutinin
Authors:Morrison, K.M.A, Iverson, T.M.
Deposit date:2023-05-09
Release date:2024-05-15
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Hsa Siglec +Unique Domains bound to Neu5Ac alpha2, 3 Gal
To Be Published
7Q0U
DownloadVisualize
BU of 7q0u by Molmil
Lysozyme soaked with V(IV)OSO4 and bipy
Descriptor: 2,2'-bipyridine, ACETATE ION, CHLORIDE ION, ...
Authors:Santos, M.F.A, Fernandes, A.C.P, Correia, I, Sciortino, G, Garribba, E, Santos-Silva, T, Pessoa, J.C.
Deposit date:2021-10-16
Release date:2022-05-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Binding of V IV O 2+ , V IV OL, V IV OL 2 and V V O 2 L Moieties to Proteins: X-ray/Theoretical Characterization and Biological Implications.
Chemistry, 28, 2022
7Q0V
DownloadVisualize
BU of 7q0v by Molmil
Lysozyme soaked with V(IV)OSO4 and phen
Descriptor: 1,10-PHENANTHROLINE, ACETATE ION, CHLORIDE ION, ...
Authors:Santos, M.F.A, Fernandes, A.C.P, Correia, I, Sciortino, G, Garribba, E, Santos-Silva, T, Pessoa, J.C.
Deposit date:2021-10-16
Release date:2022-05-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Binding of V IV O 2+ , V IV OL, V IV OL 2 and V V O 2 L Moieties to Proteins: X-ray/Theoretical Characterization and Biological Implications.
Chemistry, 28, 2022
7PGI
DownloadVisualize
BU of 7pgi by Molmil
NaVAb1p (bicelles)
Descriptor: ACETATE ION, Ion transport protein, MAGNESIUM ION, ...
Authors:Lolicato, M, Arrigoni, C.
Deposit date:2021-08-14
Release date:2022-06-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.638 Å)
Cite:Quaternary structure independent folding of voltage-gated ion channel pore domain subunits.
Nat.Struct.Mol.Biol., 29, 2022
8T3L
DownloadVisualize
BU of 8t3l by Molmil
TRPV1 in nanodisc bound with 2 LPA molecules in neighboring monomers
Descriptor: (2R)-2-hydroxy-3-(phosphonooxy)propyl tetradecanoate, (2R)-3-{[(R)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctadecanoate, SODIUM ION, ...
Authors:Arnold, W.R, Julius, D, Cheng, Y.
Deposit date:2023-06-07
Release date:2024-05-08
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis of TRPV1 modulation by endogenous bioactive lipids.
Nat.Struct.Mol.Biol., 2024
7QHP
DownloadVisualize
BU of 7qhp by Molmil
Structure of I-Ag7 with a bound hybrid insulin peptide
Descriptor: GLYCEROL, H-2 class II histocompatibility antigen, A-D alpha chain, ...
Authors:Lopez-Sagaseta, J, Erausquin, E.
Deposit date:2021-12-13
Release date:2022-07-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Structural plasticity in I-A g7 links autoreactivity to hybrid insulin peptides in type I diabetes.
Front Immunol, 13, 2022
8QNF
DownloadVisualize
BU of 8qnf by Molmil
Crystal structure of the Condensation domain TomBC from the Tomaymycin non-ribosomal peptide synthetase
Descriptor: Condensation domain TomBC from the Tomaymycin non-ribosomal peptide synthetase, FORMIC ACID, GLYCEROL, ...
Authors:Karanth, M, Schmelz, S, Kirkpatrick, J, Krausze, J, Scrima, A, Carlomagno, T.
Deposit date:2023-09-26
Release date:2024-06-26
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The specificity of intermodular recognition in a prototypical nonribosomal peptide synthetase depends on an adaptor domain.
Sci Adv, 10, 2024
8QU7
DownloadVisualize
BU of 8qu7 by Molmil
Crystal structure of the Plasmodium falciparum Apical membrane antigen (AMA1) in complex with single domain i-body WD34
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Apical membrane antigen 1, ...
Authors:Maddumage, J.C, Kvansakul, M.
Deposit date:2023-10-14
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A broadly cross-reactive i-body to AMA1 potently inhibits blood and liver stages of Plasmodium parasites
Res Sq, 2024
8POB
DownloadVisualize
BU of 8pob by Molmil
Crystal structure of Hen Egg White Lysozyme co-crystallized with 10 mM TbXo4-SO3
Descriptor: 6-[[4-[(6-carboxypyridin-2-yl)methyl]-7-(3-sulfopropyl)-1,4,7-triazonan-1-yl]methyl]pyridine-2-carboxylic acid, CHLORIDE ION, Lysozyme C, ...
Authors:Alsalman, Z, Girard, E.
Deposit date:2023-07-04
Release date:2024-07-10
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Influence of Chemical Modifications of the Crystallophore on Protein Nucleating Properties and Supramolecular Interactions Network.
Chemistry, 30, 2024
8PNX
DownloadVisualize
BU of 8pnx by Molmil
Crystal structure of D-amino acid aminotransferase from Blastococcus saxobsidens in PMP form
Descriptor: 1,2-ETHANEDIOL, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase, ...
Authors:Matyuta, I.O, Boyko, K.M, Nikolaeva, A.Y, Shilova, S.A, Popov, V.O.
Deposit date:2023-07-03
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural determinants of dual substrate recognition in the transaminase from Blastococcus saxobsidens specific to D-amino acids and R-amines
To Be Published
7UZN
DownloadVisualize
BU of 7uzn by Molmil
CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX WITH BMT-206059 AKA 2-{(3M)-3-(1,4-DIMETHYL-1H-1,2,3-TRIAZOL-5-YL)-8-FLUORO-5-[(S)-(OXAN-4-YL)(PHENYL)METHYL]-5H-PYRIDO[3,2-b]INDOL-7-YL}PROPAN-2-OL, TRIPLY DEUTERATED ON THE 4-METHYL GROUP
Descriptor: 1,2-ETHANEDIOL, 2-{(3M)-3-(1,4-dimethyl-1H-1,2,3-triazol-5-yl)-8-fluoro-5-[(S)-(oxan-4-yl)(phenyl)methyl]-5H-pyrido[3,2-b]indol-7-yl}propan-2-ol, Bromodomain-containing protein 4, ...
Authors:Sheriff, S.
Deposit date:2022-05-09
Release date:2022-08-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.685 Å)
Cite:Development of BET Inhibitors as Potential Treatments for Cancer: Optimization of Pharmacokinetic Properties.
Acs Med.Chem.Lett., 13, 2022
7RHS
DownloadVisualize
BU of 7rhs by Molmil
Cryo-EM structure of apo-state of human CNGA3/CNGB3 channel
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cyclic nucleotide-gated cation channel alpha-3, Cyclic nucleotide-gated cation channel beta-3, ...
Authors:Zheng, X, Yang, J.
Deposit date:2021-07-18
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Structure of the human cone photoreceptor cyclic nucleotide-gated channel.
Nat.Struct.Mol.Biol., 29, 2022
7RG8
DownloadVisualize
BU of 7rg8 by Molmil
Crystal Structure of a Stable Heparanase Mutant
Descriptor: ACETATE ION, Heparanase 50 kDa subunit, Heparanase 8 kDa subunit, ...
Authors:Whitefield, C, Hong, N.S, Jackson, C.J.
Deposit date:2021-07-14
Release date:2022-03-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Computational design and experimental characterisation of a stable human heparanase variant.
Rsc Chem Biol, 3, 2022
1D4P
DownloadVisualize
BU of 1d4p by Molmil
CRYSTAL STRUCTURE OF HUMAN ALPHA THROMBIN IN COMPLEX WITH 5-AMIDINOINDOLE-4-BENZYLPIPERIDINE INHIBITOR
Descriptor: 2-(4-benzylpiperidine-1-carbonyl)-1H-indole-5-carboximidamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, ALPHA-THROMBIN, ...
Authors:Chirgadze, N.Y.
Deposit date:1999-10-04
Release date:1999-10-20
Last modified:2021-04-28
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The crystal structure of human alpha-thrombin complexed with LY178550, a nonpeptidyl, active site-directed inhibitor.
Protein Sci., 6, 1997
8QNI
DownloadVisualize
BU of 8qni by Molmil
Crystal structure of the E3 ubiquitin ligase Cbl-b with an allosteric inhibitor (benzodiazepine compound 25)
Descriptor: 2-[[(2~{S})-2-methylmorpholin-4-yl]methyl]-~{N}-[(3~{S})-2-oxidanylidene-5-phenyl-1,3-dihydropyrido[3,4-e][1,4]diazepin-3-yl]benzamide, E3 ubiquitin-protein ligase CBL-B, SODIUM ION, ...
Authors:Schimpl, M.
Deposit date:2023-09-26
Release date:2023-11-22
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (2.483 Å)
Cite:Discovery of a Novel Benzodiazepine Series of Cbl-b Inhibitors for the Enhancement of Antitumor Immunity.
Acs Med.Chem.Lett., 14, 2023
7RBF
DownloadVisualize
BU of 7rbf by Molmil
Human DNA polymerase beta crosslinked binary complex - B
Descriptor: 1,2-ETHANEDIOL, 2-deoxy-3,5-di-O-phosphono-D-erythro-pentitol, DI(HYDROXYETHYL)ETHER, ...
Authors:Reed, A.J, Kumar, A.
Deposit date:2021-07-06
Release date:2022-03-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Interlocking activities of DNA polymerase beta in the base excision repair pathway.
Proc.Natl.Acad.Sci.USA, 119, 2022
8QNG
DownloadVisualize
BU of 8qng by Molmil
Crystal structure of the E3 ubiquitin ligase Cbl-b with an allosteric inhibitor (benzodiazepine HTS hit compound 1)
Descriptor: 2-(morpholin-4-ylmethyl)-~{N}-[(3~{S})-2-oxidanylidene-5-phenyl-1,3-dihydro-1,4-benzodiazepin-3-yl]benzamide, E3 ubiquitin-protein ligase CBL-B, SODIUM ION, ...
Authors:Schimpl, M.
Deposit date:2023-09-26
Release date:2023-11-22
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (2.197 Å)
Cite:Discovery of a Novel Benzodiazepine Series of Cbl-b Inhibitors for the Enhancement of Antitumor Immunity.
Acs Med.Chem.Lett., 14, 2023
7RBE
DownloadVisualize
BU of 7rbe by Molmil
Human DNA polymerase beta crosslinked binary complex - A
Descriptor: 2-deoxy-3,5-di-O-phosphono-D-erythro-pentitol, CITRIC ACID, DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ...
Authors:Reed, A.J, Kumar, A.
Deposit date:2021-07-06
Release date:2022-03-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Interlocking activities of DNA polymerase beta in the base excision repair pathway.
Proc.Natl.Acad.Sci.USA, 119, 2022
7RBG
DownloadVisualize
BU of 7rbg by Molmil
Human DNA polymerase beta crosslinked ternary complex 1
Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 2-deoxy-3,5-di-O-phosphono-D-erythro-pentitol, CALCIUM ION, ...
Authors:Reed, A.J, Kumar, A.
Deposit date:2021-07-06
Release date:2022-03-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Interlocking activities of DNA polymerase beta in the base excision repair pathway.
Proc.Natl.Acad.Sci.USA, 119, 2022
8QNH
DownloadVisualize
BU of 8qnh by Molmil
Crystal structure of the E3 ubiquitin ligase Cbl-b with an allosteric inhibitor (WO2020264398 Ex23)
Descriptor: 2-{3-[(1s,3R)-3-methyl-1-(4-methyl-4H-1,2,4-triazol-3-yl)cyclobutyl]phenyl}-6-{[(3S)-3-methylpiperidin-1-yl]methyl}-4-(trifluoromethyl)-2,3-dihydro-1H-isoindol-1-one, E3 ubiquitin-protein ligase CBL-B, SODIUM ION, ...
Authors:Schimpl, M.
Deposit date:2023-09-26
Release date:2023-11-22
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Discovery of a Novel Benzodiazepine Series of Cbl-b Inhibitors for the Enhancement of Antitumor Immunity.
Acs Med.Chem.Lett., 14, 2023

222624

数据于2024-07-17公开中

PDB statisticsPDBj update infoContact PDBjnumon