PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

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1Z8S	DnaB binding domain of DnaG (P16) from Bacillus stearothermophilus (residues 452-597) Descriptor: DNA primase Authors: Syson, K, Thirlway, J, Hounslow, A.M, Soultanas, P, Waltho, J.P. Deposit date: 2005-03-31 Release date: 2005-10-04 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the helicase-interaction domain of the primase DnaG: a model for helicase activation Structure, 13, 2005
1EFS	CONFORMATION OF A DNA-RNA HYBRID Descriptor: DNA (5'-D(*GP*AP*GP*AP*GP*GP*AP*AP*GP*AP*GP*AP*A)-3'), RNA (5'-R(*UP*UP*CP*UP*CP*UP*UP*CP*CP*UP*CP*UP*C)-3') Authors: Larue, V, Hantz, E. Deposit date: 2000-02-10 Release date: 2000-03-06 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution conformation of an RNA--DNA hybrid duplex containing a pyrimidine RNA strand and a purine DNA strand. Int.J.Biol.Macromol., 28, 2001
1JIH	Yeast DNA Polymerase ETA Descriptor: DNA Polymerase ETA Authors: Trincao, J, Johnson, R.E, Escalante, C.R, Prakash, S, Prakash, L, Aggarwal, A.K. Deposit date: 2001-07-02 Release date: 2002-01-09 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structure of the catalytic core of S. cerevisiae DNA polymerase eta: implications for translesion DNA synthesis Mol.Cell, 8, 2001
1AXP	DNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 6 STRUCTURES Descriptor: DNA (D(GAAGAGAAGC)(DOT)D(GCTTCTCTTC)) Authors: Gyi, J.I, Lane, A.N, Conn, G.L, Brown, T. Deposit date: 1997-10-17 Release date: 1998-04-22 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structures of DNA.RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexes. Biochemistry, 37, 1998
7EDV	DNA duplex containing C-G-Au-C base triple Descriptor: DNA (5'-D(*GP*GP*AP*CP*CP*CP*CP*GP*GP*TP*CP*C)-3'), GOLD ION Authors: Kondo, J, Iwase, E. Deposit date: 2021-03-17 Release date: 2022-03-23 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.01 Å) Cite: DNA duplex containing C-G-Au-C base triple To Be Published
7EDW	DNA duplex containing T-T base pairs in complex with Au(III) Descriptor: DNA (5'-D(*GP*GP*AP*CP*CP*TP*TP*GP*GP*TP*CP*C)-3'), GOLD ION Authors: Kondo, J, Iwase, E. Deposit date: 2021-03-17 Release date: 2022-03-23 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2 Å) Cite: DNA duplex containing T-T base pairs in complex with Au(III) To Be Published
1EI1	DIMERIZATION OF E. COLI DNA GYRASE B PROVIDES A STRUCTURAL MECHANISM FOR ACTIVATING THE ATPASE CATALYTIC CENTER Descriptor: DNA GYRASE B, GLYCEROL, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Brino, L, Urzhumtsev, A, Oudet, P, Moras, D. Deposit date: 2000-02-23 Release date: 2000-03-31 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Dimerization of Escherichia coli DNA-gyrase B provides a structural mechanism for activating the ATPase catalytic center. J.Biol.Chem., 275, 2000
4GQD	DNA Holliday junction stabilized by chlorine halogen bond. Descriptor: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(UCL)P*CP*GP*G)-3'), SODIUM ION Authors: Carter, M, Ho, P.S. Deposit date: 2012-08-22 Release date: 2013-07-31 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions. Biochemistry, 52, 2013
4HTO	Crystal structure of the DBD domain of human DNA ligase IV Apo form Descriptor: DNA ligase 4, PHOSPHATE ION Authors: De Ioannes, P.E, Aggarwal, A.K. Deposit date: 2012-11-01 Release date: 2012-12-26 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.8068 Å) Cite: Structural Basis of DNA Ligase IV-Artemis Interaction in Nonhomologous End-Joining. Cell Rep, 2, 2012
4HTP	Crystal structure of the DBD domain of human DNA ligase IV bound to Artemis peptide Descriptor: DNA ligase 4, Protein artemis Authors: De Ioannes, P.E, Aggarwal, A.K. Deposit date: 2012-11-01 Release date: 2012-12-26 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.2502 Å) Cite: Structural Basis of DNA Ligase IV-Artemis Interaction in Nonhomologous End-Joining. Cell Rep, 2, 2012
1TAE	Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal Descriptor: DNA ligase, NAD-dependent, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... Authors: Gajiwala, K.S, Pinko, C. Deposit date: 2004-05-19 Release date: 2004-11-23 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal. STRUCTURE, 12, 2004
287D	X-RAY AND SOLUTION STUDIES OF DNA OLIGOMERS AND IMPLICATIONS FOR THE STRUCTURAL BASIS OF A-TRACT-DEPENDENT CURVATURE Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*TP*AP*TP*CP*GP*CP*G)-3') Authors: Eisenstein, M, Shatzky-Schwartz, M, Shakked, Z. Deposit date: 1996-09-20 Release date: 1997-05-08 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.2 Å) Cite: X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature. J.Mol.Biol., 267, 1997
297D	X-RAY AND SOLUTION STUDIES OF DNA OLIGOMERS AND IMPLICATIONS FOR THE STRUCTURAL BASIS OF A-TRACT-DEPENDENT CURVATURE Descriptor: DNA (5'-D(*CP*GP*CP*AP*IP*AP*TP*(5CM)P*TP*GP*CP*G)-3') Authors: Arbuckle, N.D, Luisi, B.F. Deposit date: 1996-11-19 Release date: 1997-02-19 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature. J.Mol.Biol., 267, 1997
1FJX	STRUCTURE OF TERNARY COMPLEX OF HHAI METHYLTRANSFERASE MUTANT (T250G) IN COMPLEX WITH DNA AND ADOHCY Descriptor: DNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'), HHAI DNA METHYLTRANSFERASE, S-ADENOSYL-L-HOMOCYSTEINE, ... Authors: Vilkaitis, G, Dong, A, Weinhold, E, Cheng, X, Klimasauskas, S. Deposit date: 2000-08-08 Release date: 2000-12-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.26 Å) Cite: Functional roles of the conserved threonine 250 in the target recognition domain of HhaI DNA methyltransferase. J.Biol.Chem., 275, 2000
1BP7	GROUP I MOBILE INTRON ENDONUCLEASE I-CREI COMPLEXED WITH HOMING SITE DNA Descriptor: CALCIUM ION, DNA (5'-D(*CP*GP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*TP*TP*TP*TP* GP*C)-3'), DNA (5'-D(*GP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*GP*TP*TP*TP* CP*G)-3'), ... Authors: Jurica, M.S, Monnat Junior, R.J, Stoddard, B.L. Deposit date: 1998-08-13 Release date: 1999-01-06 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (3 Å) Cite: DNA recognition and cleavage by the LAGLIDADG homing endonuclease I-CreI. Mol.Cell, 2, 1998
2KHO	NMR-RDC / XRAY structure of E. coli HSP70 (DNAK) chaperone (1-605) complexed with ADP and substrate Descriptor: Heat shock protein 70 Authors: Zuiderweg, E.R.P, Bertelsen, E.B. Deposit date: 2009-04-10 Release date: 2009-05-12 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution conformation of wild-type E. coli Hsp70 (DnaK) chaperone complexed with ADP and substrate. Proc.Natl.Acad.Sci.USA, 106, 2009
5BZY	X-ray crystal structure of a continuously hydrogen bonded 14mer DNA lattice. Descriptor: DNA (5'-D(*GP*GP*AP*AP*AP*TP*AP*TP*TP*GP*GP*AP*GP*A)-3'), MAGNESIUM ION Authors: Saoji, M, Paukstelis, P.J. Deposit date: 2015-06-11 Release date: 2015-11-11 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Sequence-dependent structural changes in a self-assembling DNA oligonucleotide. Acta Crystallogr.,Sect.D, 71, 2015
5BZ7	X-ray crystal structure of a continuously hydrogen bonded 14mer DNA lattice. Descriptor: DNA (5'-D(*GP*GP*AP*AP*AP*AP*TP*TP*TP*GP*GP*AP*GP*A)-3'), MAGNESIUM ION Authors: Saoji, M, Paukstelis, P.J. Deposit date: 2015-06-11 Release date: 2015-11-11 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Sequence-dependent structural changes in a self-assembling DNA oligonucleotide. Acta Crystallogr.,Sect.D, 71, 2015
5BXW	X-ray crystal structure of a continuously hydrogen bonded 14mer DNA lattice. Descriptor: DNA (5'-D(*GP*GP*AP*AP*AP*GP*CP*TP*TP*GP*GP*AP*GP*A)-3'), MAGNESIUM ION Authors: Saoji, M, Paukstelis, P.J. Deposit date: 2015-06-09 Release date: 2015-11-11 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Sequence-dependent structural changes in a self-assembling DNA oligonucleotide. Acta Crystallogr.,Sect.D, 71, 2015
5BZ9	X-ray crystal structure of a continuously hydrogen bonded 14mer DNA lattice. Descriptor: DNA (5'-D(GGAAACGTTGGAGA), MAGNESIUM ION Authors: Saoji, M, Paukstelis, P.J. Deposit date: 2015-06-11 Release date: 2015-11-11 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Sequence-dependent structural changes in a self-assembling DNA oligonucleotide. Acta Crystallogr.,Sect.D, 71, 2015
1D0Q	STRUCTURE OF THE ZINC-BINDING DOMAIN OF BACILLUS STEAROTHERMOPHILUS DNA PRIMASE Descriptor: DNA PRIMASE, ZINC ION Authors: Pan, H, Wigley, D.B. Deposit date: 1999-09-14 Release date: 2000-03-29 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.71 Å) Cite: Structure of the zinc-binding domain of Bacillus stearothermophilus DNA primase. Structure Fold.Des., 8, 2000
4I1G	dna octamer d(GTseGTACAC) partially crosslinked with two platinums Descriptor: DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3'), PLATINUM (II) ION Authors: Zhang, W, Coronado, G, Huang, Z. Deposit date: 2012-11-20 Release date: 2012-12-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.25 Å) Cite: dna octamer d(GTseGTACAC) partially crosslinked with two platinums TO BE PUBLISHED
2RU8	DnaT C-terminal domain Descriptor: Primosomal protein 1 Authors: Abe, Y, Tani, J, Fujiyama, S, Urabe, M, Sato, K, Aramaki, T, Katayama, T, Ueda, T. Deposit date: 2014-01-29 Release date: 2014-10-08 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure and mechanism of the primosome protein DnaT-functional structures for homotrimerization, dissociation of ssDNA from the PriB·ssDNA complex, and formation of the DnaT·ssDNA complex. Febs J., 281, 2014
5UZ1	Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 3rd position and 8-oxoguanine at the 10th position Descriptor: DNA (5'-D(*CP*GP*(DMC)P*GP*AP*AP*TP*TP*CP*(8OG)P*CP*G)-3') Authors: Gruber, D.R, Hoppins, J.J, Miears, H.L, Endutkin, A.V, Zharkov, D.O, Smirnov, S.L. Deposit date: 2017-02-24 Release date: 2017-05-31 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation. Nucleic Acids Res., 46, 2018
5TRN	Solution Structure of a DNA Dodecamer with 8-oxoguanine at the 4th position and 5-methylcytosine at the 9th position Descriptor: DNA (5'-D(*CP*GP*CP*(8OG)P*AP*AP*TP*TP*(DMC)P*GP*CP*G)-3') Authors: Hoppins, J.J, Gruber, D.R, Miears, H.L, Endutkin, A.V, Zharkov, D.O, Smirnov, S.L. Deposit date: 2016-10-26 Release date: 2017-06-28 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation. Nucleic Acids Res., 46, 2018

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