PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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2AJE	Solution structure of the Arabidopsis thaliana telomeric repeat-binding protein DNA binding domain Descriptor: telomere repeat-binding protein Authors: Hsiao, H.H, Sue, S.C, Chung, B.C, Cheng, Y.H, Huang, T.H. Deposit date: 2005-08-01 Release date: 2006-07-04 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the Arabidopsis thaliana telomeric repeat-binding protein DNA binding domain: a new fold with an additional C-terminal helix J.Mol.Biol., 356, 2006
2L89	Solution structure of Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA Descriptor: PWWP domain-containing protein 1 Authors: Qiu, Y, Zhang, J, Zhang, W. Deposit date: 2011-01-07 Release date: 2011-12-21 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution structure of Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA Biochem.J., 2011
1D9Z	CRYSTAL STRUCTURE OF THE DNA REPAIR PROTEIN UVRB IN COMPLEX WITH ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, EXCINUCLEASE UVRABC COMPONENT UVRB, MAGNESIUM ION, ... Authors: Theis, K, Chen, P.J, Skorvaga, M, Van Houten, B, Kisker, C. Deposit date: 1999-10-30 Release date: 2000-05-03 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3.15 Å) Cite: Crystal structure of UvrB, a DNA helicase adapted for nucleotide excision repair. EMBO J., 18, 1999
3LLN	Comparison between the orthorhombic an tetragonal form of the heptamer sequence d(GCG(xT)GCG)/d(CGCACGC). Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*CP*GP*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*(XTR)P*GP*CP*G)-3') Authors: Robeyns, K, Herdewijn, P, Van Meervelt, L. Deposit date: 2010-01-29 Release date: 2010-08-18 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3 Å) Cite: Comparison between the orthorhombic and tetragonal forms of the heptamer sequence d[GCG(xT)GCG]/d(CGCACGC) Acta Crystallogr.,Sect.F, 66, 2010
4Z1X	Crystal structure of LAGLIDADG homing endonuclease I-GzeII in complex with DNA target Descriptor: CALCIUM ION, DNA (27-MER), LAGLIDADG endonuclease Authors: Stoddard, B.L, Lambert, A.R, Kulshina, N. Deposit date: 2015-03-27 Release date: 2015-04-22 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of LAGLIDADG homing endonuclease I-GzeII in complex with DNA target To Be Published
1SSV	Compensating bends in a 16 base-pair DNA oligomer containing a T3A3 segment Descriptor: 5'-D(*CP*GP*AP*GP*GP*TP*TP*TP*AP*AP*AP*CP*CP*TP*CP*G)-3' Authors: McAteer, K, Aceves-Gaona, A, Michalczyk, R, Buchko, G.W, Isern, N.G, Silks, L.A, Miller, J.H, Kennedy, M.A. Deposit date: 2004-03-24 Release date: 2004-12-07 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Compensating bends in a 16-base-pair DNA oligomer containing a T(3)A(3) segment: A NMR study of global DNA curvature Biopolymers, 75, 2004
1T4I	Crystal Structure of a DNA Decamer Containing a Thymine-dimer Descriptor: 5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3', 5'-D(*GP*CP*TP*TP*AP*AP*TP*TP*CP*G)-3' Authors: Park, H, Zhang, K, Ren, Y, Nadji, S, Sinha, N, Taylor, J.S, Kang, C. Deposit date: 2004-04-29 Release date: 2004-05-25 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal Structure of a DNA Decamer Containing a cis-syn Thymine-dimer Proc.Natl.Acad.Sci.USA, 99, 2002
5I4S	Non-natural DNA pair Z (6-amino-5-nitro-2[1H] pyridone heterocycle)-Guanosine Descriptor: CALCIUM ION, DNA (5'-D(P*GP*CP*GP*AP*AP*TP*TP*(D8Z)P*GP*CP*G)-3') Authors: Ahmad Sobri, A.F, Brady, R.L. Deposit date: 2016-02-12 Release date: 2017-02-22 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.46 Å) Cite: Non-natural DNA pair Z (6-amino-5-nitro-2[1H] pyridone heterocycle)-Guanosine To Be Published
1SSJ	A DNA DUPLEX CONTAINING A CHOLESTEROL ADDUCT (BETA-ANOMER) Descriptor: 5'-D(*CP*CP*AP*CP*(HOB)P*GP*GP*AP*AP*C)-3', 5'-D(GP*TP*TP*CP*CP*GP*GP*TP*GP*G)-3' Authors: Gomez-Pinto, I, Cubero, E, Kalko, S.G, Monaco, V, van der Marel, G, van Boom, J.H, Orozco, M, Gonzalez, C. Deposit date: 2004-03-24 Release date: 2004-06-01 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Effect of bulky lesions on DNA: Solution structure of a DNA duplex containing a cholesterol adduct. J.Biol.Chem., 279, 2004
8JFR	N-terminal domain of AcrIIA15 in complex with palindromic DNA substrate Descriptor: AcrIIA15, DNA (5'-D(*AP*TP*TP*AP*TP*GP*AP*CP*AP*AP*AP*TP*GP*TP*CP*AP*TP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*AP*TP*GP*AP*CP*AP*TP*TP*TP*GP*TP*CP*AP*TP*AP*A)-3') Authors: Deng, X, Wang, Y. Deposit date: 2023-05-18 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (3.1 Å) Cite: N-terminal domain of AcrIIA15 in complex with palindromic DNA substrate To Be Published
8JG9	Cryo-EM structure of the SaCas9-sgRNA-AcrIIA15-promoter DNA dimer Descriptor: AcrIIA15, CRISPR-associated endonuclease Cas9, DNA (25-MER), ... Authors: Deng, X, Wang, Y. Deposit date: 2023-05-20 Release date: 2024-02-28 Method: ELECTRON MICROSCOPY (3.82 Å) Cite: Cryo-EM structure of the SaCas9-sgRNA-AcrIIA15-promoter DNA dimer To Be Published
1RMX	A SHORT LEXITROPSIN THAT RECOGNIZES THE DNA MINOR GROOVE AT 5'-ACTAGT-3': UNDERSTANDING THE ROLE OF ISOPROPYL-THIAZOLE Descriptor: 5'-D(*CP*GP*AP*CP*TP*AP*GP*TP*CP*G)-3', N-[3-(DIMETHYLAMINO)PROPYL]-2-({[4-({[4-(FORMYLAMINO)-1-METHYL-1H-PYRROL-2-YL]CARBONYL}AMINO)-1-METHYL-1H-PYRROL-2-YL]CARBONYL}AMINO)-5-ISOPROPYL-1,3-THIAZOLE-4-CARBOXAMIDE Authors: Anthony, N.G, Johnston, B.F, Khalaf, A.I, Mackay, S.P, Parkinson, J.A, Suckling, C.J, Waigh, R.D. Deposit date: 2003-11-28 Release date: 2004-08-24 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Short Lexitropsin that Recognizes the DNA Minor Groove at 5'-ACTAGT-3': Understanding the Role of Isopropyl-thiazole. J.Am.Chem.Soc., 126, 2004
1P4Y	Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions Descriptor: 5'-D(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3', SODIUM ION Authors: Hays, F.A, Vargason, J.M, Ho, P.S. Deposit date: 2003-04-24 Release date: 2003-09-02 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Effect of Sequence on the Conformation of DNA Holliday Junctions Biochemistry, 42, 2003
1NW6	Structure of the beta class N6-adenine DNA methyltransferase RsrI bound to sinefungin Descriptor: CHLORIDE ION, MODIFICATION METHYLASE RSRI, SINEFUNGIN Authors: Thomas, C.B, Scavetta, R.D, Gumport, R.I, Churchill, M.E.A. Deposit date: 2003-02-05 Release date: 2003-07-29 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.94 Å) Cite: Structures of liganded and unliganded RsrI N6-adenine DNA methyltransferase: a distinct orientation for active cofactor binding J.Biol.Chem., 278, 2003
1NW8	Structure of L72P mutant beta class N6-adenine DNA methyltransferase RsrI Descriptor: CHLORIDE ION, MODIFICATION METHYLASE RSRI Authors: Thomas, C.B, Scavetta, R.D, Gumport, R.I, Churchill, M.E.A. Deposit date: 2003-02-05 Release date: 2003-07-29 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structures of liganded and unliganded RsrI N6-adenine DNA methyltransferase: a distinct orientation for active cofactor binding J.Biol.Chem., 278, 2003
6CQ3	Crystal structure of DNA dodecamer D(CGCGAATTCGCG) Descriptor: COBALT (II) ION, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Delgado, J.L, Vance, N.R, Kerns, R.J. Deposit date: 2018-03-14 Release date: 2018-05-02 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Crystal structure of DNA dodecamer D(CGCGAATTCGCG) To Be Published
1NW7	Structure of the beta class N6-adenine DNA methyltransferase RsrI bound to S-ADENOSYL-L-HOMOCYSTEINE Descriptor: CHLORIDE ION, MODIFICATION METHYLASE RSRI, S-ADENOSYL-L-HOMOCYSTEINE Authors: Thomas, C.B, Scavetta, R.D, Gumport, R.I, Churchill, M.E.A. Deposit date: 2003-02-05 Release date: 2003-07-29 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structures of liganded and unliganded RsrI N6-adenine DNA methyltransferase: a distinct orientation for active cofactor binding J.Biol.Chem., 278, 2003
1NW5	Structure of the beta class N6-adenine DNA methyltransferase RsrI bound to S-ADENOSYLMETHIONINE Descriptor: CHLORIDE ION, MODIFICATION METHYLASE RSRI, S-ADENOSYLMETHIONINE Authors: Thomas, C.B, Scavetta, R.D, Gumport, R.I, Churchill, M.E.A. Deposit date: 2003-02-05 Release date: 2003-07-29 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structures of liganded and unliganded RsrI N6-adenine DNA methyltransferase: a distinct orientation for active cofactor binding J.Biol.Chem., 278, 2003
6RSO	Structure of [Ru(phen)2(10-NO2-dppz)]2+ bound to the DNA sequence d(TCGGCGCCGA) Descriptor: BARIUM ION, DNA (5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'), Ruthenium (bis-(phenanthroline)) (10-nitro-dipyridophenazine) Authors: McQuaid, K.T, Hall, J.P, Cardin, C.J. Deposit date: 2019-05-21 Release date: 2020-07-08 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Structure of [Ru(phen)2(10-NO2-dppz)]2+ bound to the DNA sequence d(TCGGCGCCGA) To Be Published
4BLG	Crystal structure of MHV-68 Latency-associated nuclear antigen (LANA) C-terminal DNA binding domain Descriptor: LATENCY-ASSOCIATED NUCLEAR ANTIGEN, PHOSPHATE ION Authors: Correia, B, Cerqueira, S.A, Beauchemin, C, Pires De Miranda, M, Li, S, Ponnusamy, R, Rodrigues, L, Schneider, T.R, Carrondo, M.A, Kaye, K.M, Simas, J.P, McVey, C.E. Deposit date: 2013-05-02 Release date: 2013-10-30 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure of the Gamma-2 Herpesvirus Lana DNA Binding Domain Identifies Charged Surface Residues which Impact Viral Latency Plos Pathog., 9, 2013
2WPU	Chaperoned ruthenium metallodrugs that recognize telomeric DNA Descriptor: (3AS,4S,6AR)-4-(5-((3R,4R)-3,4-DIAMINOPYRROLIDIN-1-YL)-5-OXOPENTYL)TETRAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-2(3H)-ONE-P-CYMENE-CHLORO-RUTHENIUM(III), GLYCEROL, STREPTAVIDIN, ... Authors: Heinisch, T, Schirmer, T, Zimbron, J.M, Sardo, A, Wohlschlager, T, Gradinaru, J, Creus, M, Ward, T.R. Deposit date: 2009-08-10 Release date: 2010-10-13 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.92 Å) Cite: Chemo-Genetic Optimization of DNA Recognition by Metallodrugs Using a Presenter-Protein Strategy. Chemistry, 16, 2010
4NCJ	Crystal Structure of Pyrococcus furiosis Rad50 R805E mutation with ADP Beryllium Flouride Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA double-strand break repair Rad50 ATPase, ... Authors: Classen, S, Williams, G.J, Arvai, A.S, Williams, R.S. Deposit date: 2013-10-24 Release date: 2014-03-05 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling. Embo J., 33, 2014
1SS7	Compensating bends in a 16 base-pair DNA oligomer containing a T3A3 segment Descriptor: 5'-D(*CP*GP*AP*GP*GP*TP*TP*TP*AP*AP*AP*CP*CP*TP*CP*G)-3' Authors: McAteer, K, Aceves-Gaona, A, Michalczyk, R, Buchko, G.W, Isern, N.G, Silks, L.A, Miller, J.H, Kennedy, M.A. Deposit date: 2004-03-23 Release date: 2004-12-07 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Compensating bends in a 16-base-pair DNA oligomer containing a T(3)A(3) segment: A NMR study of global DNA curvature Biopolymers, 75, 2004
1SP6	A DNA duplex containing a cholesterol adduct (alpha-anomer) Descriptor: 5'-D(*CP*CP*AP*CP*(HOL)P*GP*GP*AP*AP*C)-3', 5'-D(GP*TP*TP*CP*CP*GP*GP*TP*GP*G)-3' Authors: Gomez-Pinto, I, Cubero, E, Kalko, S.G, Monaco, V, van der Marel, G, van Boom, J.H, Orozco, M, Gonzalez, C. Deposit date: 2004-03-16 Release date: 2004-06-01 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Effect of bulky lesions on DNA: Solution structure of a DNA duplex containing a cholesterol adduct. J.Biol.Chem., 279, 2004
1SM5	Crystal Structure of a DNA Decamer Containing a Thymine-dimer Descriptor: 5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3', 5'-D(*GP*CP*(BRU)P*TP*AP*AP*TP*(BRU)P*CP*G)-3' Authors: Park, H, Zhang, K, Ren, Y, Nadji, S, Sinha, N, Taylor, J.-S, Kang, C. Deposit date: 2004-03-08 Release date: 2004-05-25 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structure of a DNA Decamer Containing a Thymine-dimer Proc.Natl.Acad.Sci.USA, 99, 2002

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