Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8SMW
DownloadVisualize
BU of 8smw by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 1)
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
Deposit date:2023-04-26
Release date:2024-01-17
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SN6
DownloadVisualize
BU of 8sn6 by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 4)
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
Deposit date:2023-04-26
Release date:2024-01-17
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SN7
DownloadVisualize
BU of 8sn7 by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 5)
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
Deposit date:2023-04-26
Release date:2024-01-17
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SN4
DownloadVisualize
BU of 8sn4 by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 2)
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
Deposit date:2023-04-26
Release date:2024-01-17
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SN2
DownloadVisualize
BU of 8sn2 by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c (UbcH5c chemically conjugated to histone H2A)
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
Deposit date:2023-04-26
Release date:2024-01-17
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SN5
DownloadVisualize
BU of 8sn5 by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 3)
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
Deposit date:2023-04-26
Release date:2024-01-17
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SMY
DownloadVisualize
BU of 8smy by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 3)
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
Deposit date:2023-04-26
Release date:2024-01-17
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SNA
DownloadVisualize
BU of 8sna by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c with backside ubiquitin (UbcH5c chemically conjugated to histone H2A) (class 2)
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
Deposit date:2023-04-26
Release date:2024-01-17
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SMZ
DownloadVisualize
BU of 8smz by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (Class 4)
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
Deposit date:2023-04-26
Release date:2024-01-17
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SN3
DownloadVisualize
BU of 8sn3 by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 1)
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
Deposit date:2023-04-26
Release date:2024-01-17
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SN8
DownloadVisualize
BU of 8sn8 by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A) (class 6)
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
Deposit date:2023-04-26
Release date:2024-01-17
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SN9
DownloadVisualize
BU of 8sn9 by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c with backside ubiquitin (UbcH5c chemically conjugated to histone H2A) (class 1)
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
Deposit date:2023-04-26
Release date:2024-01-17
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SN0
DownloadVisualize
BU of 8sn0 by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 5)
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
Deposit date:2023-04-26
Release date:2024-01-17
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SN1
DownloadVisualize
BU of 8sn1 by Molmil
Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 6)
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G.
Deposit date:2023-04-26
Release date:2024-01-17
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Mechanisms of RNF168 nucleosome recognition and ubiquitylation.
Mol.Cell, 84, 2024
8SYP
DownloadVisualize
BU of 8syp by Molmil
Genomic CX3CR1 nucleosome
Descriptor: DNA (162-MER), Histone H2A type 2-C, Histone H2B type 2-E, ...
Authors:Lian, T, Guan, R, Bai, Y.
Deposit date:2023-05-25
Release date:2023-11-01
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural mechanism of synergistic targeting of the CX3CR1 nucleosome by PU.1 and C/EBP alpha.
Nat.Struct.Mol.Biol., 31, 2024
8TAS
DownloadVisualize
BU of 8tas by Molmil
PRC2 monomer bound to nucleosome
Descriptor: DNA (226-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Sauer, P.V, Pavlenko, E, Nogales, E, Poepsel, S.
Deposit date:2023-06-27
Release date:2024-09-25
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Activation of automethylated PRC2 by dimerization on chromatin.
Mol.Cell, 84, 2024
9B2U
DownloadVisualize
BU of 9b2u by Molmil
Haspin bound to H3 tail
Descriptor: Histone H3.2, Serine/threonine-protein kinase haspin
Authors:Hicks, C.W, Wolberger, C.
Deposit date:2024-03-16
Release date:2025-01-22
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Haspin binds to nucleosomes using a unique DNA binding mechanism
To be published
8TB9
DownloadVisualize
BU of 8tb9 by Molmil
PRC2-J119-450 monomer bound to H1-nucleosome
Descriptor: DNA (226-MER), Histone H1.0, Histone H2A type 1, ...
Authors:Sauer, P.V, Cookis, T, Pavlenko, E, Nogales, E, Poepsel, S.
Deposit date:2023-06-28
Release date:2024-09-25
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Activation of automethylated PRC2 by dimerization on chromatin.
Mol.Cell, 84, 2024
9B2T
DownloadVisualize
BU of 9b2t by Molmil
Haspin bound to nucleosome in position 2
Descriptor: 601 DNA (185-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Hicks, C.W, Wolberger, C.
Deposit date:2024-03-16
Release date:2025-01-22
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Haspin binds to nucleosomes using a unique DNA binding mechanism
To be published
9B2S
DownloadVisualize
BU of 9b2s by Molmil
Haspin bound to nucleosome in position 1
Descriptor: 601 DNA (185-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Hicks, C.W, Wolberger, C.
Deposit date:2024-03-16
Release date:2025-01-22
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Haspin binds to nucleosomes using a unique DNA binding mechanism
To be published
9EH1
DownloadVisualize
BU of 9eh1 by Molmil
RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, 20 bp upstream
Descriptor: DNA-directed RNA polymerase I, II, and III subunit RPABC5, ...
Authors:Markert, J, Farnung, L.
Deposit date:2024-11-21
Release date:2024-12-18
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis of H3K36 trimethylation by SETD2 during chromatin transcription.
Science, 387, 2025
9DWK
DownloadVisualize
BU of 9dwk by Molmil
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-3.5
Descriptor: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
Authors:Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
Deposit date:2024-10-09
Release date:2025-01-15
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-3.5
To Be Published
9DWF
DownloadVisualize
BU of 9dwf by Molmil
Nucleosome containing a 1-nt gap at SHL-4.5
Descriptor: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
Authors:Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
Deposit date:2024-10-09
Release date:2025-01-15
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Nucleosome containing a 1-nt gap at SHL-4.5
To Be Published
9DWJ
DownloadVisualize
BU of 9dwj by Molmil
Nucleosome containing a 1-nt gap at SHL-3.5
Descriptor: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
Authors:Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
Deposit date:2024-10-09
Release date:2025-01-15
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Nucleosome containing a 1-nt gap at SHL-3.5
To Be Published
9DWI
DownloadVisualize
BU of 9dwi by Molmil
DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 (State 3, composite)
Descriptor: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
Authors:Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
Deposit date:2024-10-09
Release date:2025-01-15
Last modified:2025-06-04
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:DNA Polymerase Beta bound to a nucleosome containing a 1-nt gap at SHL-4.5 (State 4, composite)
To Be Published

238582

数据于2025-07-09公开中

PDB statisticsPDBj update infoContact PDBjnumon