PDB: 8033 resultsInfo pagesStatus searchChemie searchBIRD

---

8OPL	Virus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNA Descriptor: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.41 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
5TJ2	Gasdermin-B C-terminal domain containing the polymorphism residues Gly299:Ser306 fused to maltose binding protein Descriptor: Sugar ABC transporter substrate-binding protein,Gasdermin-B fusion protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose Authors: Chao, L.K, Herzberg, O. Deposit date: 2016-10-03 Release date: 2017-02-01 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Human Gasdermin-B and disease: Sulfatide Binding, Caspase cleavage, and Structural impact of Asthma- and IBS-Associated Polymorphism Proc.Natl.Acad.Sci.Usa, 2017
8OPB	Virus-like Particle based on PVY coat protein with RNA-free helical architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-02-14 Method: ELECTRON MICROSCOPY (3.58 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
5T86	Crystal structure of CDI complex from E. coli A0 34/86 Descriptor: ACETATE ION, CdiA toxin, CdiI immunity protein Authors: Michalska, K, Stols, L, Jedrzejczak, R, Hayes, C.S, Goulding, C.W, Joachimiak, A, Structure-Function Analysis of Polymorphic CDI Toxin-Immunity Protein Complexes (UC4CDI), Midwest Center for Structural Genomics (MCSG) Deposit date: 2016-09-06 Release date: 2017-09-13 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of CDI complex from E. coli A0 34/86 To Be Published
8OJ2	Crystal structure of the DNA binding domain of M. polymorpha Auxin Response Factor 2 (MpARF2) in complex with protomor-like sequence IR7 Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Auxin response factor, CHLORIDE ION, ... Authors: Crespo, I, Weijers, D, Boer, D.R. Deposit date: 2023-03-23 Release date: 2024-04-17 Last modified: 2025-04-23 Method: X-RAY DIFFRACTION (2.56 Å) Cite: The structure and function of the DNA binding domain of class B MpARF2 share more traits with class A AtARF5 than to that of class B AtARF1. Structure, 2025
5T8Q	Crystal structure of murine NF-kappaB inducing kinase (NIK) bound to aryl pyrrole fragment 17 Descriptor: 1-[(2-chlorophenyl)methyl]pyrrole-2-carboxamide, Mitogen-activated protein kinase kinase kinase 14, SULFATE ION Authors: Smith, M.A, McEwan, P.A, Hymowitz, S.G. Deposit date: 2016-09-08 Release date: 2017-01-11 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.63 Å) Cite: Structure-Based Design of Tricyclic NF-kappa B Inducing Kinase (NIK) Inhibitors That Have High Selectivity over Phosphoinositide-3-kinase (PI3K). J. Med. Chem., 60, 2017
8OJ1	Crystal structure of the DNA binding domain of M. polymorpha Auxin Response Factor 2 (MpARF2) in complex with High Affinity DNA Descriptor: Auxin response factor, CHLORIDE ION, HA7 Authors: Crespo, I, Weijers, D, Boer, D.R. Deposit date: 2023-03-23 Release date: 2024-04-03 Last modified: 2025-04-23 Method: X-RAY DIFFRACTION (2.57 Å) Cite: The structure and function of the DNA binding domain of class B MpARF2 share more traits with class A AtARF5 than to that of class B AtARF1. Structure, 2025
8BXU	Crystal structure of Odorant Binding Protein 5 from Anopheles gambiae (AgamOBP5) with MPD (2-Methyl-2,4-pentanediol) Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-ETHOXYETHANOL, Odorant binding protein, ... Authors: Liggri, P.G.V, Tsitsanou, K.E, Zographos, S.E. Deposit date: 2022-12-09 Release date: 2023-03-22 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.35 Å) Cite: The structure of AgamOBP5 in complex with the natural insect repellents Carvacrol and Thymol: Crystallographic, fluorescence and thermodynamic binding studies. Int.J.Biol.Macromol., 237, 2023
5TJ3	Crystal structure of wild type alkaline phosphatase PafA to 1.7A resolution Descriptor: Alkaline phosphatase PafA, ZINC ION Authors: Lyubimov, A.Y, Sunden, F, Ressl, S, Herschlag, D. Deposit date: 2016-10-03 Release date: 2016-11-16 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Mechanistic and Evolutionary Insights from Comparative Enzymology of Phosphomonoesterases and Phosphodiesterases across the Alkaline Phosphatase Superfamily. J.Am.Chem.Soc., 138, 2016
8OPA	Virus-like Particle based on PVY coat protein with stacked-ring architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.34 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPE	Virus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNA Descriptor: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.09 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPF	Virus-like Particle based on PVY coat protein with dC60 deletion with RNA-free helical architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPK	Local refinement of cubic assembly from truncated PVY coat protein with K176C mutation Descriptor: Genome polyprotein Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.16 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8A96	SARS Cov2 Spike RBD in complex with Fab47 Descriptor: Fab47 Heavy chain (variable domain), Fab47 Light chain (variable domain), Spike protein S1 Authors: Hallberg, B.M, Das, H. Deposit date: 2022-06-27 Release date: 2023-05-03 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Immunoglobulin germline gene polymorphisms influence the function of SARS-CoV-2 neutralizing antibodies. Immunity, 56, 2023
8A99	SARS Cov2 Spike in 1-up conformation complex with Fab47 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab47 (Heavy chain variable domain), ... Authors: Hallberg, B.M, Das, H. Deposit date: 2022-06-28 Release date: 2023-05-10 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Immunoglobulin germline gene polymorphisms influence the function of SARS-CoV-2 neutralizing antibodies. Immunity, 56, 2023
5NGQ	Bicyclic antimicrobial peptides Descriptor: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid, CALCIUM ION, DLS-PRO-ALD-CYS-TYD-ALA-CYD-LYS-ALA, ... Authors: Di Bonaventura, I, Jin, X, Visini, R, Michaud, G, Robadey, M, Koehler, T, van Delden, C, Stocker, A, Darbre, T, Reymond, J.-L. Deposit date: 2017-03-20 Release date: 2017-08-23 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.17 Å) Cite: Chemical space guided discovery of antimicrobial bridged bicyclic peptides against Pseudomonas aeruginosa and its biofilms. Chem Sci, 8, 2017
8A94	SARS CoV2 Spike in the 2-up state in complex with Fab47. Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab47 (Heavy chain Variable domain), ... Authors: Hallberg, B.M, Das, H. Deposit date: 2022-06-27 Release date: 2023-05-03 Last modified: 2024-11-20 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Immunoglobulin germline gene polymorphisms influence the function of SARS-CoV-2 neutralizing antibodies. Immunity, 56, 2023
6S5S	Cfucosylated second generation peptide dendrimer SBD8 bound to Fucose binding Lectin LecB (PA-IIL) from Pseudomonas aeruginosa at 1.43 Angstrom resolution Descriptor: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid, AMINO GROUP, CALCIUM ION, ... Authors: Baeriswyl, S, Stocker, A, Reymond, J.-L. Deposit date: 2019-07-02 Release date: 2019-08-21 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.433 Å) Cite: X-Ray Crystal Structure of a Second Generation Peptide Dendrimer in Complex with Pseudomonas aeruginosa Lectin LecB Helv.Chim.Acta, 2019
8A95	SARS Cov2 Spike RBD in complex with Fab47 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab47 (Heavy chain variable domain), ... Authors: Hallberg, B.M, Das, H. Deposit date: 2022-06-27 Release date: 2023-08-16 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (2.64 Å) Cite: Immunoglobulin germline gene polymorphisms influence the function of SARS-CoV-2 neutralizing antibodies. Immunity, 56, 2023
6SNI	Cryo-EM structure of nanodisc reconstituted yeast ALG6 in complex with 6AG9 Fab Descriptor: 6AG9-Fab heavy chain, 6AG9-Fab light chain, CHOLESTEROL HEMISUCCINATE, ... Authors: Bloch, J.S, Pesciullesi, G, Boilevin, J, Nosol, K, Irobalieva, R.N, Darbre, T, Aebi, M, Kossiakoff, A.A, Reymond, J.L, Locher, K.P. Deposit date: 2019-08-24 Release date: 2020-03-11 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structure and mechanism of the ER-based glucosyltransferase ALG6. Nature, 579, 2020
6U2H	BRAF dimer bound to 14-3-3 Descriptor: 14-3-3 protein zeta/delta, 2-{4-[(1E)-1-(hydroxyimino)-2,3-dihydro-1H-inden-5-yl]-3-(pyridin-4-yl)-1H-pyrazol-1-yl}ethanol, Serine/threonine-protein kinase B-raf Authors: Liau, N.P.D, Hymowitz, S.G, Sudhamsu, J. Deposit date: 2019-08-19 Release date: 2019-08-28 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Negative regulation of RAF kinase activity by ATP is overcome by 14-3-3-induced dimerization. Nat.Struct.Mol.Biol., 27, 2020
2LMO	Structural Model for a 40-Residue Beta-Amyloid Fibril with Two-Fold Symmetry, Negative Stagger Descriptor: Beta-amyloid protein 40 Authors: Tycko, R, Petkova, A. Deposit date: 2011-12-08 Release date: 2011-12-28 Last modified: 2024-05-01 Method: SOLID-STATE NMR Cite: Molecular structural basis for polymorphism in Alzheimer's beta-amyloid fibrils. Proc. Natl. Acad. Sci. U.S.A., 105, 2008
2LMQ	Structural Model for a 40-residue Beta-Amyloid Fibril with Three-Fold Symmetry, Negative Stagger Descriptor: Beta-amyloid protein 40 Authors: Tycko, R, Paravastu, A. Deposit date: 2011-12-09 Release date: 2011-12-28 Last modified: 2024-05-01 Method: SOLID-STATE NMR Cite: Molecular structural basis for polymorphism in Alzheimer's beta-amyloid fibrils. Proc. Natl. Acad. Sci. U.S.A., 105, 2008
2LMN	Structural Model for a 40-Residue Beta-Amyloid Fibril with Two-Fold Symmetry, Positive Stagger Descriptor: Beta-amyloid protein 40 Authors: Tycko, R, Petkova, A. Deposit date: 2011-12-08 Release date: 2011-12-28 Last modified: 2024-05-01 Method: SOLID-STATE NMR Cite: Molecular structural basis for polymorphism in Alzheimer's beta-amyloid fibrils. Proc. Natl. Acad. Sci. U.S.A., 105, 2008
2LMP	Structural Model for a 40-residue Beta-Amyloid Fibril with Three-Fold Symmetry, Positive Stagger Descriptor: Beta-amyloid protein 40 Authors: Tycko, R, Paravastu, A. Deposit date: 2011-12-08 Release date: 2011-12-28 Last modified: 2024-05-01 Method: SOLID-STATE NMR Cite: Molecular structural basis for polymorphism in Alzheimer's beta-amyloid fibrils Proc.Natl.Acad.Sci.USA, 105, 2008

<23242526272829303132333435363738>