Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9GKH
DownloadVisualize
BU of 9gkh by Molmil
KvPepIH62A mutant,F420-dependent oxidoreductase
Descriptor: Putative F420-dependent oxidoreductase
Authors:Mueller, R, Zhao, H, Sikandar, A.
Deposit date:2024-08-24
Release date:2025-06-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Tandem ketone reduction in pepstatin biosynthesis reveals an F 420 H 2 -dependent statine pathway.
Nat Commun, 16, 2025
9GNV
DownloadVisualize
BU of 9gnv by Molmil
Human SENP5 in complex with SUMO1
Descriptor: Sentrin-specific protease 5, Small ubiquitin-related modifier 1
Authors:Reverter, D, Sanchez-Alba, L, Li, Y.
Deposit date:2024-09-04
Release date:2025-06-25
Last modified:2025-10-22
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structural basis for the human SENP5's SUMO isoform discrimination.
Nat Commun, 16, 2025
1LZA
DownloadVisualize
BU of 1lza by Molmil
DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Descriptor: HEN EGG WHITE LYSOZYME
Authors:Maenaka, K, Matsushima, M, Song, H, Watanabe, K, Kumagai, I.
Deposit date:1995-02-10
Release date:1995-05-08
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Dissection of protein-carbohydrate interactions in mutant hen egg-white lysozyme complexes and their hydrolytic activity.
J.Mol.Biol., 247, 1995
9GD6
DownloadVisualize
BU of 9gd6 by Molmil
NME1 94-Phosphoserine
Descriptor: Nucleoside diphosphate kinase A
Authors:Roderer, D, Schoepf, F, Fiedler, D, Celik, A.
Deposit date:2024-08-05
Release date:2025-06-11
Last modified:2025-09-03
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Nucleoside diphosphate kinase A (NME1) catalyses its own oligophosphorylation.
Nat.Chem., 2025
7R6S
DownloadVisualize
BU of 7r6s by Molmil
Crystal Structure of the Putative Bacteriophage Protein from Stenotrophomonas maltophilia
Descriptor: Putative bacteriophage protein, SULFATE ION
Authors:Minasov, G, Shuvalova, L, Kiryukhina, O, Brunzelle, J.S, Wiersum, G, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2021-06-23
Release date:2022-11-09
Last modified:2025-09-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Bactericidal effectors of the Stenotrophomonas maltophilia type IV secretion system: functional definition of the nuclease TfdA and structural determination of TfcB.
Mbio, 15, 2024
1M83
DownloadVisualize
BU of 1m83 by Molmil
Crystal Structure of Tryptophanyl-tRNA Synthetase Complexed with ATP in a Closed, Pre-transition State Conformation
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
Authors:Retailleau, P, Huang, X, Yin, Y, Hu, M, Weinreb, V, Vachette, P, Vonrhein, C, Bricogne, G, Roversi, P, Ilyin, V, Carter Jr, C.W.
Deposit date:2002-07-24
Release date:2002-12-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Interconversion of ATP binding and conformational free energies by tryptophanyl-tRNA synthetase: structures of ATP bound to open and closed, pre-transition-state conformations.
J.Mol.Biol., 325, 2003
9GTJ
DownloadVisualize
BU of 9gtj by Molmil
Chlorite dismutase from Pseudomonas sp.
Descriptor: CHLORIDE ION, Chlorite dismutase, IMIDAZOLE, ...
Authors:Papageorgiou, A.C, Chronopoulou, E.G.
Deposit date:2024-09-18
Release date:2025-06-11
Last modified:2025-10-22
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Biochemical and structural characterization of chlorite dismutase enzyme from Pseudomonas aeruginosa.
Febs J., 292, 2025
1LZL
DownloadVisualize
BU of 1lzl by Molmil
Bacterial Heroin Esterase
Descriptor: HEROIN ESTERASE
Authors:Zhu, X, Larsen, N.A, Basran, A, Bruce, N.C, Wilson, I.A.
Deposit date:2002-06-10
Release date:2003-01-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:OBSERVATION OF AN ARSENIC ADDUCT IN AN ACETYL ESTERASE CRYSTAL STRUCTURE
J.Biol.Chem., 278, 2003
9G8F
DownloadVisualize
BU of 9g8f by Molmil
Carotenoid cleavage oxygenase from Moesziomyces aphidis bound to orto vanillin
Descriptor: FE (II) ION, Lignostilbene dioxygenase, ortho-vanillin
Authors:Plewka, J, Schorber, L, Magiera-Mularz, K, Rudroff, F, Winkler, M.
Deposit date:2024-07-23
Release date:2025-06-25
Last modified:2025-08-13
Method:X-RAY DIFFRACTION (1.844 Å)
Cite:Structural and Functional Characteristics of Potent Dioxygenase from Moesziomyces aphidis .
Jacs Au, 5, 2025
7RQT
DownloadVisualize
BU of 7rqt by Molmil
THE B-DNA DODECAMER With HIGH RESOLUTION
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Chen, C, Huang, Z.
Deposit date:2021-08-08
Release date:2022-08-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:2'-beta-Selenium Atom on Thymidine to Control beta-Form DNA Conformation and Large Crystal Formation
Cryst.Growth Des., 2022
9G19
DownloadVisualize
BU of 9g19 by Molmil
Structure of the Nothoceros aenigmaticus LFY DNA-binding domain bound to DNA
Descriptor: DNA (25-MER), Floricaula/leafy-like transcription factor
Authors:Zubieta, C, Verhage, L, Nanao, M.H, Parcy, F.
Deposit date:2024-07-09
Release date:2025-07-16
Method:X-RAY DIFFRACTION (3.092 Å)
Cite:Structure of the Nothoceros aenigmaticus LFY DNA-binding domain bound to DNA
To Be Published
1M08
DownloadVisualize
BU of 1m08 by Molmil
Crystal structure of the unbound nuclease domain of ColE7
Descriptor: Colicin E7, PHOSPHATE ION, ZINC ION
Authors:Cheng, Y.S, Hsia, K.C, Doudeva, L.G, Chak, K.F, Yuan, H.S.
Deposit date:2002-06-12
Release date:2002-12-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Crystal Structure of the Nuclease Domain of Colicin E7 Suggests a Mechanism for Binding to Double-stranded DNA by the H-N-H Endonucleases
J.mol.biol., 324, 2002
1M0J
DownloadVisualize
BU of 1m0j by Molmil
solution structure of the beta domain of mt_nc
Descriptor: CADMIUM ION, metallothionein MT_nc
Authors:Capasso, C, Carginale, V, Crescenzi, O, Di Maro, D, Parisi, E, Spadaccini, R, Temussi, P.A.
Deposit date:2002-06-13
Release date:2003-05-06
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of MT_nc, a Novel Metallothionein from the Antarctic Fish Notothenia coriiceps.
Structure, 11, 2003
9G05
DownloadVisualize
BU of 9g05 by Molmil
Structure of MadB, a class I dehydrates from Clostridium maddingley, in complex with its substrate
Descriptor: Lantibiotic, gallidermin/nisin family, Thiopeptide-type bacteriocin biosynthesis domain containing protein
Authors:Knospe, C.V, Ortiz, J, Reiners, J, Kedrov, A, Gerten, C, Smits, S.H.J, Schmitt, L.
Deposit date:2024-07-07
Release date:2025-07-16
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Structural insights into the substrate binding mechanism of the class I dehydratase MadB.
Commun Biol, 8, 2025
1M0Z
DownloadVisualize
BU of 1m0z by Molmil
Crystal Structure of the von Willebrand Factor Binding Domain of Glycoprotein Ib alpha
Descriptor: Glycoprotein Ib alpha
Authors:Huizinga, E.G, Tsuji, S, Romijn, R.A.P, Schiphorst, M.E, de Groot, P.G, Sixma, J.J, Gros, P.
Deposit date:2002-06-16
Release date:2002-08-28
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structures of glycoprotein Ibalpha and its complex with von Willebrand factor A1 domain.
Science, 297, 2002
1M1G
DownloadVisualize
BU of 1m1g by Molmil
Crystal Structure of Aquifex aeolicus N-utilization substance G (NusG), Space Group P2(1)
Descriptor: Transcription antitermination protein nusG
Authors:Steiner, T, Kaiser, J.T, Marinkovic, S, Huber, R, Wahl, M.C.
Deposit date:2002-06-19
Release date:2003-02-04
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of transcription factor NusG in light of its nucleic acid- and protein-binding activities
Embo J., 21, 2002
9G0I
DownloadVisualize
BU of 9g0i by Molmil
Crystal structure of SARS-CoV-2 main protease (MPro) in complex with the noncovalently bound inhibitor C5N17B
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, IMIDAZOLE, ...
Authors:Yang, C.-C, Strater, N, Sylvester, K, Muller, C.E, Yang, M, Lee, M.K, Gao, S, Song, L, Liu, X, Kim, M, Zhan, P.
Deposit date:2024-07-08
Release date:2025-07-02
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Miniaturized Modular Click Chemistry-enabled Rapid Discovery of Unique SARS-CoV-2 M pro Inhibitors With Robust Potency and Drug-like Profile.
Adv Sci, 11, 2024
1M1Z
DownloadVisualize
BU of 1m1z by Molmil
BETA-LACTAM SYNTHETASE APO ENZYME
Descriptor: BETA-LACTAM SYNTHETASE
Authors:Miller, M.T, Bachmann, B.O, Townsend, C.A, Rosenzweig, A.C.
Deposit date:2002-06-20
Release date:2002-10-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The catalytic cycle of beta -lactam synthetase observed by x-ray crystallographic snapshots
Proc.Natl.Acad.Sci.USA, 99, 2002
9GTG
DownloadVisualize
BU of 9gtg by Molmil
RIPK1 in complex with AZ"902
Descriptor: (5R)-5-[(7-chloro-1H-indol-3-yl)methyl]-3-methylimidazolidine-2,4-dione, Receptor-interacting serine/threonine-protein kinase 1, ~{N}-[[(3~{S})-1-ethanoylpyrrolidin-3-yl]methyl]-~{N}-methyl-4-quinolin-7-yl-benzenesulfonamide
Authors:Petersen, J.
Deposit date:2024-09-17
Release date:2025-07-02
Last modified:2025-07-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Discovery and Validation of a Novel Class of Necroptosis Inhibitors Targeting RIPK1.
Acs Chem.Biol., 20, 2025
7RU7
DownloadVisualize
BU of 7ru7 by Molmil
Crystal structure of BtrK, a decarboxylase involved in butirosin biosynthesis
Descriptor: DI(HYDROXYETHYL)ETHER, L-glutamyl-[BtrI acyl-carrier protein] decarboxylase, PYRIDOXAL-5'-PHOSPHATE
Authors:Arenas, L.A.R, Paiva, F.C.R, Huang, F, Leadlay, P, Dias, M.V.B.
Deposit date:2021-08-16
Release date:2022-08-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of BtrK, a decarboxylase involved in the (S)-4-amino-2-hydroxybutyrate (AHBA) formation during butirosin biosynthesis
J.Mol.Struct., 1267, 2022
1M9W
DownloadVisualize
BU of 1m9w by Molmil
Study of electrostatic potential surface distribution using high resolution side-chain conformation determined by NMR
Descriptor: plastocyanin
Authors:Monleon, D, Celda, B.
Deposit date:2002-07-30
Release date:2002-08-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Study of electrostatic potential surface distribution of wild-type plastocyanin Synechocystis solution structure determined by homonuclear NMR.
Biopolymers, 70, 2003
9FZ9
DownloadVisualize
BU of 9fz9 by Molmil
Glycoside Hydrolase Family 157 from Labilibaculum antarcticum, wild type SeMet derivative (LaGH157)
Descriptor: ACETATE ION, GLYCEROL, Glycoside hydrolase family 2 catalytic domain-containing protein, ...
Authors:Bule, P, Alves, V.D, Carvalho, A.L.
Deposit date:2024-07-04
Release date:2025-07-16
Method:X-RAY DIFFRACTION (2.443 Å)
Cite:Family GH157 enzyme exhibits broad linkage tolerance and a dual endo/exo-beta-glucanase activity on beta-glucans.
Int.J.Biol.Macromol., 282, 2024
9G0A
DownloadVisualize
BU of 9g0a by Molmil
Influenza A/H7N9 polymerase post-cleavage cap-snatching complex
Descriptor: 3' vRNA, 5' cap(1) RNA, 5' vRNA, ...
Authors:Rotsch, A.H, Li, D, Dienemann, C, Cusack, S, Cramer, P.
Deposit date:2024-07-07
Release date:2025-07-16
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Mechanism of Co-Transcriptional Cap-Snatching by Influenza Polymerase
To Be Published
1MAQ
DownloadVisualize
BU of 1maq by Molmil
CRYSTAL STRUCTURES OF TRUE ENZYMATIC REACTION INTERMEDIATES: ASPARTATE AND GLUTAMATE KETIMINES IN ASPARTATE AMINOTRANSFERASE
Descriptor: ASPARTATE AMINOTRANSFERASE, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid
Authors:Malashkevich, V.N, Jansonius, J.N.
Deposit date:1993-09-10
Release date:1994-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of true enzymatic reaction intermediates: aspartate and glutamate ketimines in aspartate aminotransferase.
Biochemistry, 32, 1993
9FYI
DownloadVisualize
BU of 9fyi by Molmil
[4Fe-4S] Cluster-Containing L-Cysteine Desulfidase CyuA from Methanococcus maripaludis
Descriptor: IRON/SULFUR CLUSTER, L-cysteine desulfidase, SULFATE ION
Authors:Zecchin, P, Pecqueur, L, Golinelli, B.
Deposit date:2024-07-03
Release date:2025-07-16
Method:X-RAY DIFFRACTION (2.937 Å)
Cite:Insights into the phylogenetic distribution, structure and function of [4Fe-4S]-dependent L-cysteine desulfidase, an enzyme that supplies sulfide to the archaeon Methanococcus maripaludis
To Be Published

243911

数据于2025-10-29公开中

PDB statisticsPDBj update infoContact PDBjnumon