Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4CPR
DownloadVisualize
BU of 4cpr by Molmil
Macrocyclic Transition-State Mimicking HIV-1 Protease Inhibitors Encompassing a Tertiary Alcohol
Descriptor: CHLORIDE ION, PROTEASE, methyl ~{N}-[(2~{S})-3,3-dimethyl-1-[2-[(4~{R})-5-[[(2~{S})-3-methyl-1-oxidanylidene-1-(prop-2-enylamino)butan-2-yl]amino]-4-oxidanyl-5-oxidanylidene-4-[(4-prop-2-enylphenyl)methyl]pentyl]-2-[(4-thiophen-2-ylphenyl)methyl]hydrazinyl]-1-oxidanylidene-butan-2-yl]carbamate
Authors:DeRosa, M, Unge, J, Motwani, H.V, Rosenquist, A, Vrang, L, Wallberg, H, Larhed, M.
Deposit date:2014-02-08
Release date:2014-12-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Synthesis of P1'-Functionalized Macrocyclic Transition-State Mimicking HIV-1 Protease Inhibitors Encompassing a Tertiary Alcohol.
J.Med.Chem., 57, 2014
3FWP
DownloadVisualize
BU of 3fwp by Molmil
X-ray structure of uridine nucleoside phosphorylease from Salmonella typhimurium complexed with phosphate and its inhibitor 2,2'-anhydrouridine at 1.86 A resolution
Descriptor: 2,2'-Anhydro-(1-beta-D-arabinofuranosyl)uracil, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Lashkov, S.A, Mikhailov, A.M, Gabdulkhakov, A.G.
Deposit date:2009-01-19
Release date:2010-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:The X-ray structure of Salmonella typhimurium uridine nucleoside phosphorylase complexed with 2,2'-anhydrouridine, phosphate and potassium ions at 1.86 A resolution.
Acta Crystallogr.,Sect.D, 66, 2010
2R1P
DownloadVisualize
BU of 2r1p by Molmil
OpdA from Agrobacterium radiobacter with bound product diethyl thiophosphate from co-crystallisation with tetraethyl dithiopyrophosphate- 1.8 A
Descriptor: 1,2-ETHANEDIOL, COBALT (II) ION, FE (II) ION, ...
Authors:Ollis, D.L, Jackson, C.J, Foo, J.L, Kim, H.K, Carr, P.D, Liu, J.W, Salem, G.
Deposit date:2007-08-23
Release date:2008-02-12
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:In crystallo capture of a Michaelis complex and product-binding modes of a bacterial phosphotriesterase
J.Mol.Biol., 375, 2008
3MYX
DownloadVisualize
BU of 3myx by Molmil
Crystal structure of a PSPTO_0244 (Protein with unknown function which belongs to Pfam DUF861 family) from Pseudomonas syringae pv. tomato str. DC3000 at 1.30 A resolution
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, uncharacterized protein PSPTO_0244
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2010-05-11
Release date:2010-06-09
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of a PSPTO_0244 (Protein with unknown function which belongs to Pfam DUF861 family) from Pseudomonas syringae pv. tomato str. DC3000 at 1.30 A resolution
To be published
3MW1
DownloadVisualize
BU of 3mw1 by Molmil
p38 kinase Crystal structure in complex with small molecule inhibitor
Descriptor: 8-(2,6-dichlorophenyl)-4-(2,4-difluorophenyl)-2-piperidin-4-yl-1,7-naphthyridine 7-oxide, Mitogen-activated protein kinase 14
Authors:Segarra, V, Caturla, F, Lumeras, W, Roca, R, Fisher, M, Lamers, M.
Deposit date:2010-05-05
Release date:2011-04-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:1,7-Naphthyridine 1-Oxides as Novel Potent and Selective Inhibitors of p38 Mitogen Activated Protein Kinase
J.Med.Chem., 54, 2011
1NV6
DownloadVisualize
BU of 1nv6 by Molmil
Fructose-1,6-Bisphosphatase Complex With Magnesium, Fructose-6-Phosphate, Phosphate, EDTA and Thallium (20 mM)
Descriptor: 6-O-phosphono-beta-D-fructofuranose, Fructose-1,6-Bisphosphatase, HYDROGENPHOSPHATE ION, ...
Authors:Choe, J, Iancu, C.V, Fromm, H.J, Honzatko, R.B.
Deposit date:2003-02-02
Release date:2003-07-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Interaction of Tl+ with product complexes of fructose-1,6-bisphosphatase
J.BIOL.CHEM., 278, 2003
3WPV
DownloadVisualize
BU of 3wpv by Molmil
Microbacterium saccharophilum K-1 beta-fructofuranosidase mutant T47S/F447V/F470Y/P500S
Descriptor: Beta-fructofuranosidase, GLYCEROL
Authors:Yokoi, G, Mori, M, Sato, S, Miyazaki, T, Nishikawa, A, Tonozuka, T.
Deposit date:2014-01-17
Release date:2014-03-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Enhancing thermostability and the structural characterization of Microbacterium saccharophilum K-1 beta-fructofuranosidase
Appl.Microbiol.Biotechnol., 98, 2014
2XME
DownloadVisualize
BU of 2xme by Molmil
The X-ray structure of CTP:inositol-1-phosphate cytidylyltransferase from Archaeoglobus fulgidus
Descriptor: CTP-INOSITOL-1-PHOSPHATE CYTIDYLYLTRANSFERASE, GLYCEROL
Authors:Brito, J.A, Borges, N, Vonrhein, C, Santos, H, Archer, M.
Deposit date:2010-07-27
Release date:2011-05-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal Structure of Archaeoglobus Fulgidus Ctp:Inositol-1-Phosphate Cytidylyltransferase, a Key Enzyme for Di-Myo-Inositol-Phosphate Synthesis in (Hyper)Thermophiles.
J.Bacteriol., 193, 2011
2B8M
DownloadVisualize
BU of 2b8m by Molmil
Crystal structure of a rmlc-like cupin family protein with a double-stranded beta-helix fold (mj0764) from methanocaldococcus jannaschii at 1.70 A resolution
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Hypothetical protein MJ0764, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2005-10-07
Release date:2005-11-01
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of (1499583) from METHANOCOCCUS JANNASCHII at 1.70 A resolution
To be published
4OBC
DownloadVisualize
BU of 4obc by Molmil
Crystal structure of HCV polymerase NS5b genotype 2a JFH-1 isolate with the S15G, C223H, V321I resistance mutations against the guanosine analog GS-0938 (PSI-3529238)
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Edwards, T.E, Abendroth, J, Appleby, T.C.
Deposit date:2014-01-07
Release date:2014-09-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular and Structural Basis for the Roles of Hepatitis C Virus Polymerase NS5B Amino Acids 15, 223, and 321 in Viral Replication and Drug Resistance.
Antimicrob.Agents Chemother., 58, 2014
4JO1
DownloadVisualize
BU of 4jo1 by Molmil
Crystal structure of rabbit mAb R56 Fab in complex with V3 crown of HIV-1 JR-FL gp120
Descriptor: CALCIUM ION, gp120, monoclonal anti-HIV-1 gp120 V3 antibody R56 heavy chain, ...
Authors:Pan, R.M, Kong, X.P.
Deposit date:2013-03-16
Release date:2013-07-31
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.033 Å)
Cite:Rabbit Anti-HIV-1 Monoclonal Antibodies Raised by Immunization Can Mimic the Antigen-Binding Modes of Antibodies Derived from HIV-1-Infected Humans.
J.Virol., 87, 2013
2VMJ
DownloadVisualize
BU of 2vmj by Molmil
Type 1 Copper-Binding Loop of Nitrite Reductase mutant: 130- CAPEGMVPWHVVSGM-144 to 130-CTPHPFM-136
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE, ZINC ION
Authors:Sato, K, Firbank, S.J, Li, C, Banfield, M.J, Dennison, C.
Deposit date:2008-01-28
Release date:2008-12-23
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Importance of the Long Type 1 Copper-Binding Loop of Nitrite Reductase for Structure and Function.
Chemistry, 14, 2008
4Q1U
DownloadVisualize
BU of 4q1u by Molmil
Serum paraoxonase-1 by directed evolution with the K192Q mutation
Descriptor: BROMIDE ION, CALCIUM ION, CHLORIDE ION, ...
Authors:Ben-David, M, Sussman, J.L, Tawfik, D.S.
Deposit date:2014-04-04
Release date:2015-02-18
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Catalytic stimulation by restrained active-site floppiness-the case of high density lipoprotein-bound serum paraoxonase-1.
J.Mol.Biol., 427, 2015
4Q4C
DownloadVisualize
BU of 4q4c by Molmil
Crystal structure of the catalytic domain of human diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2) in complex with ADP and synthetic 1,5-(PP)2-IP4 (1,5-IP8)
Descriptor: (1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)], ADENOSINE-5'-DIPHOSPHATE, Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2, ...
Authors:Wang, H, Shears, S.B.
Deposit date:2014-04-14
Release date:2014-08-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Synthesis of Densely Phosphorylated Bis-1,5-Diphospho-myo-Inositol Tetrakisphosphate and its Enantiomer by Bidirectional P-Anhydride Formation.
Angew.Chem.Int.Ed.Engl., 53, 2014
1NUZ
DownloadVisualize
BU of 1nuz by Molmil
Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6-Phosphate and Phosphate
Descriptor: 6-O-phosphono-beta-D-fructofuranose, Fructose-1,6-bisphosphatase, MAGNESIUM ION, ...
Authors:Choe, J, Iancu, C.V, Fromm, H.J, Honzatko, R.B.
Deposit date:2003-02-01
Release date:2003-07-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Interaction of Tl+ with product complexes of fructose-1,6-bisphosphatase
J.BIOL.CHEM., 278, 2003
3BLZ
DownloadVisualize
BU of 3blz by Molmil
Crystal structure of a ntf2-like protein of unknown function (sbal_0622) from shewanella baltica os155 at 1.75 A resolution
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, NTF2-like protein of unknown function
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2007-12-11
Release date:2007-12-25
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of a NTF2-like protein of unknown function (YP_001049020.1) from Shewanella baltica OS155 at 1.75 A resolution
To be published
1NV3
DownloadVisualize
BU of 1nv3 by Molmil
Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6-Phosphate, Phosphate and Thallium (100 mM)
Descriptor: 6-O-phosphono-beta-D-fructofuranose, Fructose-1,6-bisphosphatase, MAGNESIUM ION, ...
Authors:Choe, J, Iancu, C.V, Fromm, H.J, Honzatko, R.B.
Deposit date:2003-02-02
Release date:2003-07-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Interaction of Tl+ with product complexes of fructose-1,6-bisphosphatase
J.BIOL.CHEM., 278, 2003
3V5T
DownloadVisualize
BU of 3v5t by Molmil
Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with inhibitor UW1299
Descriptor: 1-[(2S)-2-(dimethylamino)-3-methylbutyl]-3-(6-ethoxynaphthalen-2-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine, Calmodulin-domain protein kinase 1
Authors:Merritt, E.A, Larson, E.T.
Deposit date:2011-12-16
Release date:2012-03-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Multiple Determinants for Selective Inhibition of Apicomplexan Calcium-Dependent Protein Kinase CDPK1.
J.Med.Chem., 55, 2012
2OH1
DownloadVisualize
BU of 2oh1 by Molmil
Crystal structure of acetyltransferase GNAT family (YP_013287.1) from Listeria monocytogenes 4b F2365 at 1.46 A resolution
Descriptor: 1,2-ETHANEDIOL, Acetyltransferase, GNAT family, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2007-01-09
Release date:2007-02-13
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Crystal structure of acetyltransferase GNAT family (YP_013287.1) from Listeria monocytogenes 4b F2365 at 1.46 A resolution
To be published
3BHN
DownloadVisualize
BU of 3bhn by Molmil
Crystal structure of a dj-1/pfpi-like protein (shew_2856) from shewanella loihica pv-4 at 1.76 A resolution
Descriptor: 1,2-ETHANEDIOL, ThiJ/PfpI domain protein
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2007-11-28
Release date:2007-12-11
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structure of DJ-1 like Protein (YP_001094981.1) from Shewanella loihica PV-4 at 1.76 A resolution
To be published
1O1W
DownloadVisualize
BU of 1o1w by Molmil
SOLUTION STRUCTURE OF THE RNASE H DOMAIN OF THE HIV-1 REVERSE TRANSCRIPTASE IN THE PRESENCE OF MAGNESIUM
Descriptor: RIBONUCLEASE H
Authors:Pari, K, Mueller, G.A, Derose, E.F, Kirby, T.W, London, R.E.
Deposit date:2003-02-12
Release date:2003-02-18
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution Structure of the Rnase H Domain of the HIV-1 Reverse Transcriptase in the Presence of Magnesium
Biochemistry, 42, 2003
3SI9
DownloadVisualize
BU of 3si9 by Molmil
Crystal structure of Dihydrodipicolinate Synthase from Bartonella Henselae
Descriptor: 1,2-ETHANEDIOL, Dihydrodipicolinate synthase
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID), Staker, B.L, Abendroth, J, Sankaran, B.
Deposit date:2011-06-17
Release date:2011-06-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Cloning, expression, purification, crystallization and X-ray diffraction analysis of dihydrodipicolinate synthase from the human pathogenic bacterium Bartonella henselae strain Houston-1 at 2.1 angstrom resolution.
Acta Crystallogr F Struct Biol Commun, 72, 2016
3LHI
DownloadVisualize
BU of 3lhi by Molmil
Crystal structure of Putative 6-phosphogluconolactonase(YP_207848.1) from Neisseria gonorrhoeae FA 1090 at 1.33 A resolution
Descriptor: 1,2-ETHANEDIOL, Putative 6-phosphogluconolactonase
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2010-01-22
Release date:2010-02-23
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Crystal structure of Putative 6-phosphogluconolactonase(YP_207848.1) from Neisseria gonorrhoeae FA 1090 at 1.33 A resolution
To be Published
6KHJ
DownloadVisualize
BU of 6khj by Molmil
Supercomplex for electron transfer
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Pan, X, Cao, D, Xie, F, Zhang, X, Li, M.
Deposit date:2019-07-15
Release date:2020-02-12
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis for electron transport mechanism of complex I-like photosynthetic NAD(P)H dehydrogenase.
Nat Commun, 11, 2020
7AMK
DownloadVisualize
BU of 7amk by Molmil
Zebrafish RET Cadherin Like Domains 1 to 4.
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Purkiss, A.G, McDonald, N.Q, Goodman, K.M, Narowtek, A, Knowles, P.P.
Deposit date:2020-10-09
Release date:2021-02-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A two-site flexible clamp mechanism for RET-GDNF-GFR alpha 1 assembly reveals both conformational adaptation and strict geometric spacing.
Structure, 29, 2021

242842

数据于2025-10-08公开中

PDB statisticsPDBj update infoContact PDBjnumon