5U6Z
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![BU of 5u6z by Molmil](/molmil-images/mine/5u6z) | |
6B0Q
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![BU of 6b0q by Molmil](/molmil-images/mine/6b0q) | Zinc finger Domain of WT1(-KTS form) with 13+1mer Oligonucleotide with 3' Triplet TGT | Descriptor: | DNA (5'-D(P*AP*AP*CP*AP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*TP*GP*GP*GP*AP*GP*TP*GP*TP*T)-3'), SULFATE ION, ... | Authors: | Horton, J.R, Cheng, X. | Deposit date: | 2017-09-14 | Release date: | 2018-01-03 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.794 Å) | Cite: | Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
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2C7P
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![BU of 2c7p by Molmil](/molmil-images/mine/2c7p) | HhaI DNA methyltransferase complex with oligonucleotide containing 2- aminopurine opposite to the target base (GCGC:GMPC) and SAH | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-D(*G*GP*AP*TP*GP*(5CM*2PR)*CP*TP*GP*AP*C)-3', 5'-D(*G*TP*CP*AP*GP*CP*GP*CP*AP*TP*CP*C)-3', ... | Authors: | Neely, R.K, Daujotyte, D, Grazulis, S, Magennis, S.W, Dryden, D.T.F, Klimasauskas, S, Jones, A.C. | Deposit date: | 2005-11-25 | Release date: | 2005-12-14 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Time-Resolved Fluorescence of 2-Aminopurine as a Probe of Base Flipping in M.HhaI-DNA Complexes. Nucleic Acids Res., 33, 2005
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8VMR
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![BU of 8vmr by Molmil](/molmil-images/mine/8vmr) | |
2Z43
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![BU of 2z43 by Molmil](/molmil-images/mine/2z43) | Structure of a twinned crystal of RadA | Descriptor: | DNA repair and recombination protein radA | Authors: | Chen, L.T, Ko, T.P, Wang, A.H.J, Wang, T.F. | Deposit date: | 2007-06-12 | Release date: | 2007-11-13 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.93 Å) | Cite: | Structural and functional analyses of five conserved positively charged residues in the L1 and N-terminal DNA binding motifs of archaeal RADA protein Plos One, 2, 2007
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4HCB
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![BU of 4hcb by Molmil](/molmil-images/mine/4hcb) | The metal-free form of crystal structure of E.coli ExoI-ssDNA complex | Descriptor: | DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Exodeoxyribonuclease I, GLYCEROL, ... | Authors: | Qiu, R, Wei, J, Lou, T, Liu, M, Ji, C, Gong, W. | Deposit date: | 2012-09-29 | Release date: | 2013-10-09 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | The structures of Escherichia coli exonuclease I in complex with the single strand DNA To be published
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1CW9
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![BU of 1cw9 by Molmil](/molmil-images/mine/1cw9) | DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE | Descriptor: | 5'-D(*CP*CP*AP*GP*(G47)P*CP*CP*TP*GP*G)-3', CALCIUM ION | Authors: | van Aalten, D.M.F, Erlanson, D.A, Verdine, G.L, Joshua-Tor, L. | Deposit date: | 1999-08-26 | Release date: | 1999-10-14 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | A structural snapshot of base-pair opening in DNA. Proc.Natl.Acad.Sci.USA, 96, 1999
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1M3H
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![BU of 1m3h by Molmil](/molmil-images/mine/1m3h) | Crystal Structure of Hogg1 D268E Mutant with Product Oligonucleotide | Descriptor: | 5'-D(P*GP*CP*GP*TP*CP*CP*AP*(DDX))-3', 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*TP*AP*CP*C)-3', ... | Authors: | Chung, S.J, Verdine, G.L. | Deposit date: | 2002-06-27 | Release date: | 2004-04-20 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | Structures of End Products Resulting from Lesion Processing by a DNA Glycosylase/Lyase Chem.Biol., 11, 2004
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2J5O
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![BU of 2j5o by Molmil](/molmil-images/mine/2j5o) | Pseudomonas aeruginosa FtsK gamma domain | Descriptor: | DNA TRANSLOCASE FTSK | Authors: | Sivanathan, V, Allen, M.D, deBekker, C, Baker, R, Arciszewska, L, Freund, S.M, Bycroft, M, Lowe, J, Sherratt, D.J. | Deposit date: | 2006-09-19 | Release date: | 2006-10-04 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | The Ftsk Gamma Domain Directs Oriented DNA Translocation by Interacting with Kops. Nat.Struct.Mol.Biol., 13, 2006
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5X3H
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![BU of 5x3h by Molmil](/molmil-images/mine/5x3h) | |
3GPU
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![BU of 3gpu by Molmil](/molmil-images/mine/3gpu) | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC4-loop deletion complex | Descriptor: | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3'), DNA glycosylase, ... | Authors: | Banerjee, A, Qi, Y, Verdine, G.L. | Deposit date: | 2009-03-23 | Release date: | 2009-11-10 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (1.62 Å) | Cite: | Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme. Nature, 462, 2009
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3GQ3
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![BU of 3gq3 by Molmil](/molmil-images/mine/3gq3) | MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC5-loop deletion complex | Descriptor: | DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3'), DNA glycosylase, ... | Authors: | Banerjee, A, Qi, Y, Verdine, G.L. | Deposit date: | 2009-03-23 | Release date: | 2009-11-10 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (1.83 Å) | Cite: | Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme. Nature, 462, 2009
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3GPX
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![BU of 3gpx by Molmil](/molmil-images/mine/3gpx) | Sequence-matched MutM Interrogation Complex 4 (IC4) | Descriptor: | DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*AP*GP*TP*CP*TP*AP*CP*C)-3'), DNA glycosylase, ... | Authors: | Spong, M.C, Qi, Y, Verdine, G.L. | Deposit date: | 2009-03-23 | Release date: | 2009-11-10 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (1.78 Å) | Cite: | Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme. Nature, 462, 2009
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3GQ5
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![BU of 3gq5 by Molmil](/molmil-images/mine/3gq5) | Sequence-matched MutM Interrogation Complex 5 (IC5) | Descriptor: | DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*T*CP*CP*GP*GP*GP*TP*CP*TP*AP*CP*C)-3'), DNA glycosylase, ... | Authors: | Qi, Y, Verdine, G.L. | Deposit date: | 2009-03-23 | Release date: | 2009-11-10 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme. Nature, 462, 2009
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2J5P
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![BU of 2j5p by Molmil](/molmil-images/mine/2j5p) | E. coli FtsK gamma domain | Descriptor: | DNA TRANSLOCASE FTSK | Authors: | Sivanathan, V, Allen, M.D, de Bekker, C, Baker, R, Arciszewska, L, Freund, S.M, Bycroft, M, Lowe, J, Sherratt, D.J. | Deposit date: | 2006-09-19 | Release date: | 2006-10-04 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | The Ftsk Gamma Domain Directs Oriented DNA Translocation by Interacting with Kops. Nat.Struct.Mol.Biol., 13, 2006
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1NEQ
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![BU of 1neq by Molmil](/molmil-images/mine/1neq) | |
2P0J
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![BU of 2p0j by Molmil](/molmil-images/mine/2p0j) | Structure of restriction endonuclease BstYI bound to non-cognate DNA | Descriptor: | 5'-D(*AP*TP*GP*AP*AP*TP*CP*CP*AP*TP*A)-3', 5'-D(*TP*AP*TP*GP*GP*AP*TP*TP*CP*AP*T)-3', BstYI | Authors: | Townson, S.A, Samuelson, J.C, Bao, Y, Xu, S.Y, Aggarwal, A.K. | Deposit date: | 2007-02-28 | Release date: | 2007-05-01 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | BstYI Bound to Noncognate DNA Reveals a "Hemispecific" Complex: Implications for DNA Scanning. Structure, 15, 2007
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7U3O
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![BU of 7u3o by Molmil](/molmil-images/mine/7u3o) | [a2T7] Self-assembling asymmetric tensegrity triangle with P1 symmetry | Descriptor: | DNA (5'-D(*AP*AP*CP*CP*TP*AP*CP*CP*TP*GP*GP*CP*AP*GP*GP*AP*CP*GP*AP*CP*T)-3'), DNA (5'-D(*CP*AP*CP*GP*AP*GP*CP*CP*TP*GP*AP*TP*CP*GP*GP*AP*CP*AP*AP*GP*A)-3'), DNA (5'-D(*GP*AP*GP*CP*GP*AP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3'), ... | Authors: | Woloszyn, K, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. | Deposit date: | 2022-02-28 | Release date: | 2022-09-28 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3.31 Å) | Cite: | Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants. Adv Mater, 34, 2022
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3BAM
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![BU of 3bam by Molmil](/molmil-images/mine/3bam) | |
8W76
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![BU of 8w76 by Molmil](/molmil-images/mine/8w76) | Crystal structure of d(CGTATACG)2 duplex | Descriptor: | DNA (5'-D(P*CP*GP*TP*AP*TP*AP*CP*G)-3'), MANGANESE (II) ION | Authors: | Satange, R.B, Peng, C.L, Hou, M.H. | Deposit date: | 2023-08-30 | Release date: | 2024-08-07 | Method: | X-RAY DIFFRACTION (2.71 Å) | Cite: | Targeting DNA junction sites by bis-intercalators induces topological changes with potent antitumor effects. Nucleic Acids Res., 2024
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5CB1
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![BU of 5cb1 by Molmil](/molmil-images/mine/5cb1) | Apo enzyme of human Polymerase lambda | Descriptor: | DNA polymerase lambda | Authors: | Liu, M.S, Tsai, M.D. | Deposit date: | 2015-06-30 | Release date: | 2016-02-24 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.3 Å) | Cite: | Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda J.Am.Chem.Soc., 138, 2016
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5X3G
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![BU of 5x3g by Molmil](/molmil-images/mine/5x3g) | |
1NER
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![BU of 1ner by Molmil](/molmil-images/mine/1ner) | |
8H5Z
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![BU of 8h5z by Molmil](/molmil-images/mine/8h5z) | Crystal structure of RadD/ATP analogue complex | Descriptor: | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Putative DNA repair helicase RadD, ZINC ION | Authors: | Yan, X.X, Tian, L.F. | Deposit date: | 2022-10-14 | Release date: | 2023-10-18 | Method: | X-RAY DIFFRACTION (3.00002718 Å) | Cite: | Biochemical and Structural Analyses Shed Light on the Mechanisms of RadD DNA Binding and Its ATPase from Escherichia coli. Int J Mol Sci, 24, 2023
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8H5Y
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![BU of 8h5y by Molmil](/molmil-images/mine/8h5y) | Crystal structure of RadD- ADP complex | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Putative DNA repair helicase RadD, ... | Authors: | Yan, X.X, Tian, L.F. | Deposit date: | 2022-10-14 | Release date: | 2023-10-18 | Method: | X-RAY DIFFRACTION (2.7001 Å) | Cite: | Biochemical and Structural Analyses Shed Light on the Mechanisms of RadD DNA Binding and Its ATPase from Escherichia coli. Int J Mol Sci, 24, 2023
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