PDB: 13252 resultsInfo pagesStatus searchChemie searchBIRD

---

1VP9	DC26 MUTANT OF VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, VP39 Authors: Hodel, A.E, Gershon, P.D, Quiocho, F.A. Deposit date: 1996-11-23 Release date: 1997-09-17 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Specific protein recognition of an mRNA cap through its alkylated base. Nat.Struct.Biol., 4, 1997
1VP3	VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, VP39 Authors: Hodel, A.E, Gershon, P.D, Quiocho, F.A. Deposit date: 1996-11-21 Release date: 1997-09-17 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Specific protein recognition of an mRNA cap through its alkylated base. Nat.Struct.Biol., 4, 1997
6T41	CDK8/Cyclin C in complex with N-(4-chlorobenzyl)isoquinolin-4-amine Descriptor: 1,2-ETHANEDIOL, Cyclin-C, Cyclin-dependent kinase 8, ... Authors: Schneider, E.V, Maskos, K, Huber, R, Kuhn, C.-D. Deposit date: 2019-10-11 Release date: 2020-01-01 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.45 Å) Cite: A precisely positioned MED12 activation helix stimulates CDK8 kinase activity. Proc.Natl.Acad.Sci.USA, 117, 2020
2BBP	NMR structures of the peptide linked to the genome (VPg) of poliovirus Descriptor: Genome linked protein VPg Authors: Schein, C.H, Oezguen, N. Deposit date: 2005-10-17 Release date: 2006-03-28 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: NMR structure of the viral peptide linked to the genome (VPg) of poliovirus. Peptides, 27, 2006
4XWJ	Histidine-containing phosphocarrier protein (HPr) and antisigma factor Rsd complex Descriptor: Phosphocarrier protein HPr, Regulator of sigma D Authors: Um, S.H, Seok, Y.J, Ha, N.C. Deposit date: 2015-01-29 Release date: 2015-10-21 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.095 Å) Cite: Structural basis for the sequestration of the anti-sigma (70) factor Rsd from sigma (70) by the histidine-containing phosphocarrier protein HPr. Acta Crystallogr.,Sect.D, 71, 2015
1V39	DC26 MUTANT OF VACCINIA VIRUS PROTEIN VP39 IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE AND M7G(5')PPPG Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, S-ADENOSYL-L-HOMOCYSTEINE, VP39 Authors: Hodel, A.E, Gershon, P.D, Quiocho, F.A. Deposit date: 1996-12-16 Release date: 1997-09-17 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Specific protein recognition of an mRNA cap through its alkylated base. Nat.Struct.Biol., 4, 1997
4Q46	The second structure of Influenza B PB2 cap-binding domain complex with GDP Descriptor: GUANOSINE-5'-DIPHOSPHATE, Polymerase basic protein 2 Authors: Liu, Y, Yang, Y, Zheng, X. Deposit date: 2014-04-13 Release date: 2015-02-25 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: The crystal structure of the PB2 cap-binding domain of influenza B virus reveals a novel cap recognition mechanism. J.Biol.Chem., 290, 2015
1UEV	Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ... Authors: Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-05-21 Release date: 2003-12-02 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Divergent evolutions of trinucleotide polymerization revealed by an archaeal CCA-adding enzyme structure. Embo J., 22, 2003
4OR6	Structure of Influenza B PB2 cap-binding domain with Q325F mutation complex with GDP Descriptor: GUANOSINE-5'-DIPHOSPHATE, Polymerase basic protein 2 Authors: Liu, Y, Fan, J, Zheng, X. Deposit date: 2014-02-11 Release date: 2015-02-25 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.293 Å) Cite: The crystal structure of the PB2 cap-binding domain of influenza B virus reveals a novel cap recognition mechanism. J.Biol.Chem., 290, 2015
4OR4	Structure of Influenza B PB2 cap-binding domain with Q325F mutation complex with m7GDP Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, Polymerase basic protein 2 Authors: Liu, Y, Fan, J, Zheng, X. Deposit date: 2014-02-10 Release date: 2015-02-25 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.21 Å) Cite: The crystal structure of the PB2 cap-binding domain of influenza B virus reveals a novel cap recognition mechanism. J.Biol.Chem., 290, 2015
8SPG	Crystal structure of N-terminally truncated Escherichia coli RapA in complex with MgADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... Authors: Shaw, G.X, Ji, X. Deposit date: 2023-05-03 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of N-terminally truncated Escherichia coli RapA in complex with MgADP To be published
6AR5	Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications (Duplex Only) Descriptor: DNA, RNA Authors: Stamos, J.L, Lentzsch, A.M, Lambowitz, A.M. Deposit date: 2017-08-21 Release date: 2017-11-29 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.413 Å) Cite: Structure of a Thermostable Group II Intron Reverse Transcriptase with Template-Primer and Its Functional and Evolutionary Implications. Mol. Cell, 68, 2017
3PHW	OTU Domain of Crimean Congo Hemorrhagic Fever Virus in complex with Ubiquitin Descriptor: ETHANAMINE, RNA-directed RNA polymerase L, Ubiquitin-40S ribosomal protein S27a Authors: Akutsu, M, Ye, Y, Virdee, S, Komander, D. Deposit date: 2010-11-04 Release date: 2011-02-02 Last modified: 2014-08-06 Method: X-RAY DIFFRACTION (2 Å) Cite: Molecular basis for ubiquitin and ISG15 cross-reactivity in viral ovarian tumor domains. Proc.Natl.Acad.Sci.USA, 108, 2011
8FLI	Cryo-EM structure of a group II intron immediately before branching Descriptor: Group II Intron, MAGNESIUM ION, Maturase reverse transcriptase Authors: Haack, D.B, Rudolfs, B.G, Zhang, C, Lyumkis, D, Toor, N. Deposit date: 2022-12-21 Release date: 2023-12-13 Last modified: 2024-02-07 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structural basis of branching during RNA splicing. Nat.Struct.Mol.Biol., 31, 2024
3PHX	OTU Domain of Crimean Congo Hemorrhagic Fever Virus in complex with ISG15 Descriptor: ACETIC ACID, ETHANAMINE, RNA-directed RNA polymerase L, ... Authors: Akutsu, M, Ye, Y, Virdee, S, Komander, D. Deposit date: 2010-11-04 Release date: 2011-02-02 Last modified: 2014-08-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Molecular basis for ubiquitin and ISG15 cross-reactivity in viral ovarian tumor domains. Proc.Natl.Acad.Sci.USA, 108, 2011
3PHU	OTU Domain of Crimean Congo Hemorrhagic Fever Virus Descriptor: GLYCEROL, RNA-directed RNA polymerase L Authors: Akutsu, M, Ye, Y, Virdee, S, Komander, D. Deposit date: 2010-11-04 Release date: 2011-02-02 Last modified: 2014-11-12 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Molecular basis for ubiquitin and ISG15 cross-reactivity in viral ovarian tumor domains. Proc.Natl.Acad.Sci.USA, 108, 2011
3HHW	Complex of a vesicular stomatitis virus empty capsid with the nucleocapsid-binding domain of the phosphoprotein Descriptor: D(-)-TARTARIC ACID, Nucleoprotein, Phosphoprotein Authors: Green, T.J, Luo, M. Deposit date: 2009-05-18 Release date: 2009-07-28 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure of the vesicular stomatitis virus nucleocapsid in complex with the nucleocapsid-binding domain of the small polymerase cofactor, P. Proc.Natl.Acad.Sci.USA, 106, 2009
1YW5	Peptidyl-prolyl isomerase ESS1 from Candida albicans Descriptor: peptidyl prolyl cis/trans isomerase Authors: Li, Z, Li, H, Devasahayam, G, Gemmill, T, Chaturvedi, V, Hanes, S.D, Van Roey, P. Deposit date: 2005-02-17 Release date: 2005-04-26 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.6 Å) Cite: The Structure of the Candida albicans Ess1 Prolyl Isomerase Reveals a Well-Ordered Linker that Restricts Domain Mobility Biochemistry, 44, 2005
5GPY	Crystal structure of the human TFIIE complex Descriptor: General transcription factor IIE subunit 1, Transcription initiation factor IIE subunit beta, ZINC ION Authors: Obita, T, Miwa, K, Kojima, R, Ohkuma, Y, Tamura, Y, Mizuguchi, M. Deposit date: 2016-08-05 Release date: 2016-11-02 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal Structure of Human General Transcription Factor TFIIE at Atomic Resolution J.Mol.Biol., 428, 2016
5OND	RfaH from Escherichia coli in complex with ops DNA Descriptor: DNA (5'-D(*GP*CP*GP*GP*TP*AP*GP*TP*C)-3'), Transcription antitermination protein RfaH Authors: Zuber, P.K, Artsimovitch, I, Roesch, P, Knauer, S.H. Deposit date: 2017-08-03 Release date: 2018-06-06 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The universally-conserved transcription factor RfaH is recruited to a hairpin structure of the non-template DNA strand. Elife, 7, 2018
6CST	Structure of human DNA polymerase kappa with DNA Descriptor: 1,2-ETHANEDIOL, 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, CHLORIDE ION, ... Authors: Jha, V, Ling, H. Deposit date: 2018-03-21 Release date: 2019-01-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2 Å) Cite: 2.0 angstrom resolution crystal structure of human pol kappa reveals a new catalytic function of N-clasp in DNA replication. Sci Rep, 8, 2018
5R93	PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment KCL077 in complex with MAP kinase p38-alpha Descriptor: CHLORIDE ION, DIMETHYL SULFOXIDE, MAGNESIUM ION, ... Authors: De Nicola, G.F, Nichols, C.E. Deposit date: 2020-03-04 Release date: 2020-07-22 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.489 Å) Cite: Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem., 63, 2020
5R9K	PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N14246a in complex with MAP kinase p38-alpha Descriptor: 2,3-dihydro-1-benzoxepine-5-carboxylic acid, CHLORIDE ION, DIMETHYL SULFOXIDE, ... Authors: De Nicola, G.F, Nichols, C.E. Deposit date: 2020-03-04 Release date: 2020-07-22 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.498 Å) Cite: Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem., 63, 2020
5RA2	PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N09036b in complex with MAP kinase p38-alpha Descriptor: 1-(3-methylpyridin-2-yl)-1,4-diazepane, CHLORIDE ION, DIMETHYL SULFOXIDE, ... Authors: De Nicola, G.F, Nichols, C.E. Deposit date: 2020-03-04 Release date: 2020-07-22 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.57 Å) Cite: Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem., 63, 2020
5R8V	PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N09139b in complex with MAP kinase p38-alpha Descriptor: CHLORIDE ION, DIMETHYL SULFOXIDE, MAGNESIUM ION, ... Authors: De Nicola, G.F, Nichols, C.E. Deposit date: 2020-03-04 Release date: 2020-07-22 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.479 Å) Cite: Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem., 63, 2020

<211212213214215216217218219220221222223224225226>