PDB: 222415 resultsInfo pagesStatus searchChemie searchBIRD

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9B5J	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 5 map and model (Ub(A)-AMP) Descriptor: 4-aminobutanenitrile, ADENOSINE MONOPHOSPHATE, Large ribosomal subunit protein eL40B, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Method: ELECTRON MICROSCOPY (2.86 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
9EU8	The FK1 domain of FKBP51 in complex with SAFit-analog 15h Descriptor: (4-methyl-1,3-thiazol-5-yl)methyl (2S)-1-[(2S)-2-cyclohexyl-2-(3,4,5-trimethoxyphenyl)ethanoyl]piperidine-2-carboxylate, Peptidyl-prolyl cis-trans isomerase FKBP5 Authors: Meyners, C, Buffa, V, Hausch, F. Deposit date: 2024-03-27 Release date: 2024-06-12 Method: X-RAY DIFFRACTION (2.3 Å) Cite: 1,4-Pyrazolyl-containing SAFit-analogues are selective FKBP51 inhibitors with improved ligand efficiency and drug-like profile. Chemmedchem, 2024
9BRA	Intact V-ATPase State 2 and synaptophysin complex in mouse brain isolated synaptic vesicles Descriptor: Renin receptor cytoplasmic fragment, Ribonuclease kappa, Synaptophysin, ... Authors: Wang, C, Jiang, W, Yang, K, Wang, X, Guo, Q, Brunger, A.T. Deposit date: 2024-05-11 Release date: 2024-06-19 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structure and topography of the synaptic V-ATPase-synaptophysin complex. Nature, 2024
9BB6	Backbone Modification in the GA Module of Protein PAB: ACPC residues at positions 5 and 13, beta3 residue at position 9 Descriptor: Peptostreptococcal albumin-binding protein Authors: Lin, Y, Horne, W.S. Deposit date: 2024-04-05 Release date: 2024-06-05 Method: SOLUTION NMR Cite: Backbone Modification in a Protein Hydrophobic Core. Chemistry, 2024
7LYW	Crystal structure of the HCMV pentamer-specific antibody 2-25 Descriptor: 2-25 Fab Heavy Chain, 2-25 Fab Light Chain Authors: Wrapp, D, Mishra, A.K, McLellan, J.S. Deposit date: 2021-03-08 Release date: 2021-08-11 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.51 Å) Cite: Structural basis for HCMV Pentamer recognition by neuropilin 2 and neutralizing antibodies. Sci Adv, 8, 2022
8YEW	TRIP4 ASCH domain in unliganded form Descriptor: Activating signal cointegrator 1 Authors: Ding, J, Yang, H, Hu, C. Deposit date: 2024-02-23 Release date: 2024-06-26 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Biochemical and structural characterization of the DNA-binding properties of human TRIP4 ASCH domain reveals insights into its functional role. Structure, 2024
3UF8	Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with a G95A surface mutation from Burkholderia pseudomallei complexed with FK506 Descriptor: 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN, Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2011-10-31 Release date: 2011-11-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.5 Å) Cite: A structural biology approach enables the development of antimicrobials targeting bacterial immunophilins. Antimicrob.Agents Chemother., 58, 2014
8X8V	Crystal structure of Cypovirus Polyhedra mutant fused with c-Myc fragment Descriptor: Polyhedrin,Myc proto-oncogene protein Authors: Kojima, M, Ueno, T, Abe, S, Hirata, K. Deposit date: 2023-11-29 Release date: 2024-06-05 Last modified: 2024-07-03 Method: X-RAY DIFFRACTION (2 Å) Cite: High-throughput structure determination of an intrinsically disordered protein using cell-free protein crystallization. Proc.Natl.Acad.Sci.USA, 121, 2024
9B59	Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 5 Descriptor: 4-aminobutanenitrile, E3 ubiquitin-protein ligase pub2, Ubiquitin, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Method: ELECTRON MICROSCOPY (3.49 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
6QJI	Crystal Structure of the third PDZ domain of PSD-95 protein: space group P3112 Descriptor: Disks large homolog 4, SULFATE ION Authors: Camara-Artigas, A. Deposit date: 2019-01-24 Release date: 2019-04-17 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Conformational changes in the third PDZ domain of the neuronal postsynaptic density protein 95. Acta Crystallogr D Struct Biol, 75, 2019
9B5K	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 1 map and model from cluster 1 (Ub(A)/ATP/Mg) Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, Large ribosomal subunit protein eL40B, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Method: ELECTRON MICROSCOPY (3.16 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
7QRN	Crystal structure of Ovalbumin-related protein X (OVAX) complexed with fondaparinux Descriptor: 1,2-ETHANEDIOL, 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-4)-2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-methyl 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranoside, Ovalbumin-related protein X, ... Authors: Coste, F, Bruneau, G, Rehault-Godbert, S. Deposit date: 2022-01-11 Release date: 2022-11-30 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Antimicrobial Proteins and Peptides in Avian Eggshell: Structural Diversity and Potential Roles in Biomineralization. Front Immunol, 13, 2022
8ZAK	Crystal structure of the channel protein CorA from Campylobacter jejuni in complex with Ni2+ Descriptor: Magnesium transport protein CorA, NICKEL (II) ION, SULFATE ION Authors: Ahn, S.Y, Yoon, S.I. Deposit date: 2024-04-25 Release date: 2024-06-19 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural and biochemical analysis of the unique interactions of the Campylobacter jejuni CorA channel protein with divalent cations. Biochem.Biophys.Res.Commun., 723, 2024
9BB4	Backbone Modification in the GA Module of Protein PAB: beta3-residues at positions 23 and 26 Descriptor: Peptostreptococcal albumin-binding protein Authors: Lin, Y, Horne, W.S. Deposit date: 2024-04-05 Release date: 2024-06-05 Method: SOLUTION NMR Cite: Backbone Modification in a Protein Hydrophobic Core. Chemistry, 2024
9BAF	Solution NMR structure of conofurin-Delta Descriptor: Alpha-conotoxin LvIA Authors: Harvey, P.J, Craik, D.J, Hone, A.J, McIntosh, J.M. Deposit date: 2024-04-04 Release date: 2024-07-03 Method: SOLUTION NMR Cite: Design, Synthesis, and Structure-Activity Relationships of Novel Peptide Derivatives of the Severe Acute Respiratory Syndrome-Coronavirus-2 Spike-Protein that Potently Inhibit Nicotinic Acetylcholine Receptors. J.Med.Chem., 67, 2024
8ZM5	Crystal structure of Thermolysin (Dose II) Descriptor: CALCIUM ION, ISOLEUCINE, LYSINE, ... Authors: Nam, K.H. Deposit date: 2024-05-22 Release date: 2024-06-05 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystal structure of Thermolysin (Dose II) To Be Published
9B57	Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 3 Descriptor: 4-aminobutanenitrile, E3 ubiquitin-protein ligase pub2, Ubiquitin, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Method: ELECTRON MICROSCOPY (3.37 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
9BB3	Backbone Modification in the GA Module of Protein PAB: beta3-residues at positions 22 and 26 Descriptor: Peptostreptococcal albumin-binding protein Authors: Lin, Y, Horne, W.S. Deposit date: 2024-04-05 Release date: 2024-06-05 Method: SOLUTION NMR Cite: Backbone Modification in a Protein Hydrophobic Core. Chemistry, 2024
9BRS	Intact V-ATPase State 2 in synaptophysin knock-out isolated synaptic vesicles Descriptor: Renin receptor cytoplasmic fragment, Ribonuclease kappa, V-type proton ATPase 116 kDa subunit a 1, ... Authors: Wang, C, Jiang, W, Yang, K, Wang, X, Guo, Q, Brunger, A.T. Deposit date: 2024-05-11 Release date: 2024-06-19 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structure and topography of the synaptic V-ATPase-synaptophysin complex. Nature, 2024
9B5C	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - consensus map and model Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, Large ribosomal subunit protein eL40B, ... Authors: Kochanczyk, T, Lima, C.D. Deposit date: 2024-03-22 Release date: 2024-06-05 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
8YU9	Tubulin-RB3-TTL in complex with compound SI10 Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 4-(2-chloranylthieno[3,2-d]pyrimidin-4-yl)-7-methoxy-1,3-dihydroquinoxalin-2-one, CALCIUM ION, ... Authors: Wu, C.Y, Wang, Y.X. Deposit date: 2024-03-27 Release date: 2024-06-05 Method: X-RAY DIFFRACTION (3.25 Å) Cite: The crystal structure of tubulin-RB3-TTL in complex with compound AB10 To Be Published
2FZL	Structure of C-terminal domain of Archaeoglobus fulgidus XPB Descriptor: DNA repair protein RAD25, XPB, ISOPROPYL ALCOHOL Authors: Fan, L, Arvai, A.S, Tainer, J.A. Deposit date: 2006-02-09 Release date: 2006-04-18 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Conserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair Mol.Cell, 22, 2006
9BKM	DHODH in complex with Ligand 10 Descriptor: (2M,6P)-2-(2-chloro-6-fluorophenyl)-6-[4-ethyl-3-(hydroxymethyl)-5-oxo-4,5-dihydro-1H-1,2,4-triazol-1-yl]-7-fluoro-4-(propan-2-yl)isoquinolin-1(2H)-one, ACETATE ION, Dihydroorotate dehydrogenase (quinone), ... Authors: Shaffer, P.L. Deposit date: 2024-04-29 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (2.08 Å) Cite: Discovery of JNJ-74856665: A Novel Isoquinolinone DHODH Inhibitor for the Treatment of AML. J.Med.Chem., 2024
9F8X	Low-dose structure of Marinobacter nauticus nitrous oxide reductase Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ... Authors: Einsle, O, Pomowski, A. Deposit date: 2024-05-07 Release date: 2024-06-19 Method: X-RAY DIFFRACTION (1.498 Å) Cite: Revisiting the metal sites of nitrous oxide reductase in a low-dose structure from Marinobacter nauticus. J.Biol.Inorg.Chem., 29, 2024
1M5R	Ternary complex of T4 phage BGT with UDP and a 13 mer DNA duplex Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3', ... Authors: Lariviere, L, Morera, S. Deposit date: 2002-07-10 Release date: 2002-12-11 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.8 Å) Cite: A Base-flipping mechanism for the T4 phage beta-glucosyltransferase and identification of a transition state analog J.Mol.Biol., 324, 2002

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