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2L4L	Structural insights into the cTAR DNA recognition by the HIV-1 Nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC Descriptor: 5'-D(*CP*TP*GP*G)-3', HIV-1 nucleocapsid protein NCp7, ZINC ION Authors: Bazzi, A, Zargarian, L, Chaminade, F, Boudier, C, De Rocquigny, H, Rene, B, Mely, Y, Fosse, P, Mauffret, O. Deposit date: 2010-10-08 Release date: 2010-12-08 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural insights into the cTAR DNA recognition by the HIV-1 nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC. Nucleic Acids Res., 39, 2011
1HHX	Solution structure of LNA3:RNA hybrid Descriptor: 5- D(*CP*+TP*GP*AP*+TP*AP*+TP*GP*C) -3, 5- R(*GP*CP*AP*UP*AP*UP*CP*AP*G) -3 Authors: Petersen, M, Bondensgaard, K, Wengel, J, Jacobsen, J.P. Deposit date: 2000-12-29 Release date: 2002-05-30 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Locked Nucleic Acid (Lna) Recognition of RNA: NMR Solution Structures of Lna:RNA Hybrids J.Am.Chem.Soc., 124, 2002
1NAO	SOLUTION STRUCTURE OF AN RNA 2'-O-METHYLATED RNA DUPLEX CONTAINING AN RNA/DNA HYBRID SEGMENT AT THE CENTER, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: DNA/RNA (5'-R(*OMGP*OMUP*OMC)-D(P*AP*TP*CP*T)-R(P*OMCP*OMC)-3'), RNA (5'-R(*GP*GP*AP*GP*AP*UP*GP*AP*C)-3') Authors: Nishizaki, T, Iwai, S, Ohtsuka, E, Nakamura, H. Deposit date: 1996-03-29 Release date: 1997-01-27 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of an RNA.2'-O-methylated RNA hybrid duplex containing an RNA.DNA hybrid segment at the center. Biochemistry, 36, 1997
1MRC	PREPARATION, CHARACTERIZATION AND CRYSTALLIZATION OF AN ANTIBODY FAB FRAGMENT THAT RECOGNIZES RNA. CRYSTAL STRUCTURES OF NATIVE FAB AND THREE FAB-MONONUCLEOTIDE COMPLEXES Descriptor: IGG2B-KAPPA JEL103 FAB (HEAVY CHAIN), IGG2B-KAPPA JEL103 FAB (LIGHT CHAIN), IMIDAZOLE, ... Authors: Pokkuluri, P.R, Cygler, M. Deposit date: 1994-06-13 Release date: 1995-02-14 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Preparation, characterization and crystallization of an antibody Fab fragment that recognizes RNA. Crystal structures of native Fab and three Fab-mononucleotide complexes. J.Mol.Biol., 243, 1994
1MRD	PREPARATION, CHARACTERIZATION AND CRYSTALLIZATION OF AN ANTIBODY FAB FRAGMENT THAT RECOGNIZES RNA. CRYSTAL STRUCTURES OF NATIVE FAB AND THREE FAB-MONONUCLEOTIDE COMPLEXES Descriptor: IGG2B-KAPPA JEL103 FAB (HEAVY CHAIN), IGG2B-KAPPA JEL103 FAB (LIGHT CHAIN), IMIDAZOLE, ... Authors: Pokkuluri, P.R, Cygler, M. Deposit date: 1994-06-13 Release date: 1995-02-14 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Preparation, characterization and crystallization of an antibody Fab fragment that recognizes RNA. Crystal structures of native Fab and three Fab-mononucleotide complexes. J.Mol.Biol., 243, 1994
1MRF	PREPARATION, CHARACTERIZATION AND CRYSTALLIZATION OF AN ANTIBODY FAB FRAGMENT THAT RECOGNIZES RNA. CRYSTAL STRUCTURES OF NATIVE FAB AND THREE FAB-MONONUCLEOTIDE COMPLEXES Descriptor: 2'-DEOXYINOSINE-5'-MONOPHOSPHATE, IGG2B-KAPPA JEL103 FAB (HEAVY CHAIN), IGG2B-KAPPA JEL103 FAB (LIGHT CHAIN), ... Authors: Pokkuluri, P.R, Cygler, M. Deposit date: 1994-06-13 Release date: 1995-02-14 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Preparation, characterization and crystallization of an antibody Fab fragment that recognizes RNA. Crystal structures of native Fab and three Fab-mononucleotide complexes. J.Mol.Biol., 243, 1994
1HHW	Solution structure of LNA1:RNA hybrid Descriptor: 5- D(*CP*TP*GP*AP*+TLNP*AP*TP*GP*C) -3, 5- R(*GP*CP*AP*UP*AP*UP*CP*AP*G) -3 Authors: Petersen, M, Bondensgaard, K, Wengel, J, Jacobsen, J.P. Deposit date: 2000-12-29 Release date: 2002-05-30 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Locked Nucleic Acid (Lna) Recognition of RNA: NMR Solution Structures of Lna:RNA Hybrids J.Am.Chem.Soc., 124, 2002
1OVF	NMR Structure of ActD/5'-CCGTTTTGTGG-3' Complex Descriptor: (5'-D(*CP*CP*GP*TP*TP*TP*TP*GP*TP*GP*G)-3'), ACTINOMYCIN D Authors: Chin, K.-H, Chou, S.-H, Chen, F.-M. Deposit date: 2003-03-26 Release date: 2003-05-27 Last modified: 2024-07-10 Method: SOLUTION NMR Cite: Solution Structure of the Actd-5'-Ccgtt(3)Gtgg-3' Complex: Drug Interaction with Tandem G.T Mismatches and Hairpin Loop Backbone. Nucleic Acids Res., 31, 2003
1MRE	PREPARATION, CHARACTERIZATION AND CRYSTALLIZATION OF AN ANTIBODY FAB FRAGMENT THAT RECOGNIZES RNA. CRYSTAL STRUCTURES OF NATIVE FAB AND THREE FAB-MONONUCLEOTIDE COMPLEXES Descriptor: GUANOSINE-5'-DIPHOSPHATE, IGG2B-KAPPA JEL103 FAB (HEAVY CHAIN), IGG2B-KAPPA JEL103 FAB (LIGHT CHAIN), ... Authors: Pokkuluri, P.R, Cygler, M. Deposit date: 1994-06-13 Release date: 1995-02-14 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Preparation, characterization and crystallization of an antibody Fab fragment that recognizes RNA. Crystal structures of native Fab and three Fab-mononucleotide complexes. J.Mol.Biol., 243, 1994
1P4Z	Effect of Sequence on the Conformational Geometry of DNA Holliday Junctions Descriptor: 5'-D(*CP*CP*AP*GP*TP*AP*CP*TP*GP*G)-3', SODIUM ION Authors: Hays, F.A, Vargason, J.M, Ho, P.S. Deposit date: 2003-04-24 Release date: 2003-09-02 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2 Å) Cite: Effect of Sequence on the Conformation of DNA Holliday Junctions Biochemistry, 42, 2003
1OSR	Structural study of dna duplex containaing a n-(2-deoxy-beta-erytho-pentofuranosyl) formamide frameshift by nmr and restrained molecular dynamics Descriptor: 5'-D(*AP*GP*GP*AP*CP*CP*AP*CP*G)-3', 5'-D(*CP*GP*TP*GP*GP*(2DF)P*TP*CP*CP*T)-3' Authors: Maufrais, C, Fazakerley, G.V, Cadet, J, Boulard, Y. Deposit date: 2003-03-20 Release date: 2003-10-14 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural study of DNA duplex containing an N-(2-deoxy-beta-D-erythro-pentofuranosyl) formamide frameshift by NMR and restrained molecular dynamics. Nucleic Acids Res., 31, 2003
213D	CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCIGGCCM5CGG) AT 1.6 ANGSTROMS SHOWING THE UNEXPECTED WOBBLE I.M5C BASE PAIR Descriptor: DNA (5'-D(*CP*CP*IP*GP*GP*CP*CP*(5CM)P*GP*G)-3') Authors: Ramakrishnan, B, Sundaralingam, M. Deposit date: 1995-06-28 Release date: 1996-01-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of the A-DNA decamer d(CCIGGCCm5CGG) at 1.6 A showing the unexpected wobble I.m5C base pair. Biophys.J., 69, 1995
214D	THE SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING A SINGLE 2'-O-METHYL-BETA-D-ARAT Descriptor: DNA (5'-D(*CP*GP*CP*AP*TP*AP*TP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*TP*AP*(T41)P*AP*TP*GP*CP*G)-3') Authors: Gotfredsen, C.H, Spielmann, H.P, Wengel, J, Jacobsen, J.P. Deposit date: 1995-07-07 Release date: 1995-10-15 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of a DNA duplex containing a single 2'-O-methyl-beta-D-araT: combined use of NMR, restrained molecular dynamics, and full relaxation matrix refinement. Bioconjug.Chem., 7, 1996
1BW7	SOLUTION STRUCTURE OF A DNA DUPLEX CONTAINING A REPLICABLE DIFLUOROTOLUENE-ADENINE PAIR Descriptor: DNA (5'-D(*CP*GP*CP*AP*TP*(DFT)P*GP*TP*TP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*AP*AP*CP*AP*AP*TP*GP*CP*G)-3') Authors: Guckian, K.M, Krugh, T.R, Kool, E.T. Deposit date: 1998-09-30 Release date: 1998-10-07 Last modified: 2024-04-10 Method: SOLUTION NMR Cite: Solution structure of a DNA duplex containing a replicable difluorotoluene-adenine pair. Nat.Struct.Biol., 5, 1998
1D59	CRYSTAL STRUCTURE OF 4-STRANDED OXYTRICHA TELOMERIC DNA Descriptor: DNA (5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3') Authors: Kang, C, Zhang, X, Ratliff, R, Moyzis, R, Rich, A. Deposit date: 1992-02-25 Release date: 1993-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure of four-stranded Oxytricha telomeric DNA. Nature, 356, 1992
1DXN	The Solution Structure of [d(CGC)r(aaa)d(TTTGCG)]2: Hybrid Junctions Flanked by DNA Duplexes Descriptor: DNA/RNA (5'-D(*CP*GP*CP)-R(*AP*AP*AP)-D(*TP*TP*TP*GP*CP*G)-3') Authors: Hsu, S.-T, Chou, M.-T, Cheng, J.-W. Deposit date: 2000-01-11 Release date: 2000-04-11 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Hydration of [D(Cgc)R(Aaa)D(Tttgcg)]2 J.Mol.Biol., 295, 2000
1E2I	The nucleoside binding site of Herpes simplex type 1 thymidine kinase analyzed by X-ray crystallography Descriptor: 9-HYDROXYPROPYLADENINE, R-ISOMER, S-ISOMER, ... Authors: Vogt, J, Scapozza, L, Schulz, G.E. Deposit date: 2000-05-23 Release date: 2000-11-06 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Nucleoside Binding Site of Herpes Simplex Type 1 Thymidine Kinase Analyzed by X-Ray Crystallography Proteins, 41, 2000
1E2K	Kinetics and crystal structure of the wild-type and the engineered Y101F mutant of Herpes simplex virus type 1 thymidine kinase interacting with (North)-methanocarba-thymidine Descriptor: 1-[4-HYDROXY-5-(HYDROXYMETHYL)BICYCLO[3.1.0]HEX-2-YL]-5-METHYLPYRIMIDINE-2,4(1H,3H)-DIONE, SULFATE ION, THYMIDINE KINASE Authors: Vogt, J, Scapozza, L, Schulz, G.E. Deposit date: 2000-05-23 Release date: 2000-08-19 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Kinetics and Crystal Structure of the Wild-Type and the Engineered Y101F Mutant of Herpes Simplex Virus Type 1 Thymidine Kinase Interacting with (North)-Methanocarba-Thymidine Biochemistry, 39, 2000
1E2J	The nucleoside binding site of Herpes simplex type 1 thymidine kinase analyzed by X-ray crystallography Descriptor: SULFATE ION, THYMIDINE, THYMIDINE KINASE Authors: Vogt, J, Scapozza, L, Schulz, G.E. Deposit date: 2000-05-23 Release date: 2000-11-06 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Nucleoside Binding Site of Herpes Simplex Type 1 Thymidine Kinase Analyzed by X-Ray Crystallography Proteins: Struct.,Funct., Genet., 41, 2000
1E2H	The nucleoside binding site of Herpes simplex type 1 thymidine kinase analyzed by X-ray crystallography Descriptor: SULFATE ION, THYMIDINE KINASE Authors: Vogt, J, Scapozza, L, Schulz, G.E. Deposit date: 2000-05-23 Release date: 2000-11-06 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Nucleoside Binding Site of Herpes Simplex Type 1 Thymidine Kinase Analyzed by X-Ray Crystallography Proteins: Struct.,Funct., Genet., 41, 2000
1DN8	STRUCTURE OF A Z-DNA WITH TWO DIFFERENT BACKBONE CHAIN CONFORMATIONS. STABILIZATION OF THE DECADEOXYOLIGONUCLEOTIDE D(CGTACGTACG) BY (CO(NH3)6)3+ BINDING TO THE GUANINE Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*P*CP*GP*TP*AP*CP*GP*TP*AP*CP*G)-3') Authors: Brennan, R.G, Westhof, E, Sundaralingam, M. Deposit date: 1987-05-12 Release date: 1988-04-16 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structure of a Z-DNA with two different backbone chain conformations. Stabilization of the decadeoxyoligonucleotide d(CGTACGTACG) by [Co(NH3)6]3+ binding to the guanine. J.Biomol.Struct.Dyn., 3, 1986
1D63	CRYSTAL STRUCTURE OF A BERENIL-D(CGCAAATTTGCG) COMPLEX; AN EXAMPLE OF DRUG-DNA RECOGNITION BASED ON SEQUENCE-DEPENDENT STRUCTURAL FEATURES Descriptor: BERENIL, DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION Authors: Brown, D.G, Sanderson, M.R, Garman, E, Neidle, S. Deposit date: 1992-03-02 Release date: 1993-01-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of a berenil-d(CGCAAATTTGCG) complex. An example of drug-DNA recognition based on sequence-dependent structural features. J.Mol.Biol., 226, 1992
1D46	DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-100 DEGREES C, PIPERAZINE DOWN Descriptor: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Quintana, J.R, Lipanov, A.A, Dickerson, R.E. Deposit date: 1991-06-04 Release date: 1992-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry, 30, 1991
1D44	DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE DOWN Descriptor: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Quintana, J.R, Lipanov, A.A, Dickerson, R.E. Deposit date: 1991-06-04 Release date: 1992-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry, 30, 1991
1CR3	SOLUTION CONFORMATION OF THE (+)TRANS-ANTI-BENZO[G]CHRYSENE-DA ADDUCT OPPOSITE DT IN A DNA DUPLEX Descriptor: BENZO[G]CHRYSENE, DNA (5'-D(*CP*TP*CP*TP*CP*AP*CP*TP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*GP*TP*GP*AP*GP*AP*G)-3') Authors: Suri, A.K, Mao, B, Amin, S, Geacintov, N.E, Patel, D.J. Deposit date: 1999-08-12 Release date: 2000-02-18 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution conformation of the (+)-trans-anti-benzo[g]chrysene-dA adduct opposite dT in a DNA duplex. J.Mol.Biol., 292, 1999

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