PDB: 47120 resultsInfo pagesStatus searchChemie searchBIRD

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7F36	TacT complexed with acetyl-glycyl-tRNAGly Descriptor: ACETYLAMINO-ACETIC ACID, CALCIUM ION, N-acetyltransferase domain-containing protein, ... Authors: Yashiro, Y, Tomita, K. Deposit date: 2021-06-15 Release date: 2021-12-22 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.098 Å) Cite: Molecular basis of glycyl-tRNAGly acetylation by TacT from Salmonella Typhimurium Cell Rep, 37, 2021
7AKQ	Structure of D169A/E171A double mutant of chitinase Chit42 from Trichoderma harzianum complexed with chitintetraose obtained by soaking. Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ... Authors: Jimenez-Ortega, E, Sanz-Aparicio, J. Deposit date: 2020-10-01 Release date: 2021-10-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Structural inspection and protein motions modelling of a fungal glycoside hydrolase family 18 chitinase by crystallography depicts a dynamic enzymatic mechanism Comput Struct Biotechnol J, 19, 2021
2J7Q	Crystal structure of the ubiquitin-specific protease encoded by murine cytomegalovirus tegument protein M48 in complex with a ubquitin-based suicide substrate Descriptor: GLYCEROL, MAGNESIUM ION, MCMV TEGUMENT PROTEIN M48 ENCODED UBIQUITIN- SPECIFIC PROTEASE, ... Authors: Schlieker, C, Weihofen, W.A, Frijns, E, Kattenhorn, L.M, Gaudet, R, Ploegh, H.L. Deposit date: 2006-10-16 Release date: 2007-03-20 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structure of a Herpesvirus-Encoded Cysteine Protease Reveals a Unique Class of Deubiquitinating Enzymes Mol.Cell, 25, 2007
7T22	E. coli DnaB bound to three DnaG C-terminal domains, ssDNA, ADP and AlF4 Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA primase, ... Authors: Oakley, A.J, Xu, Z.Q. Deposit date: 2021-12-02 Release date: 2023-01-18 Last modified: 2023-05-31 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Sequence of conformation changes of DnaB helicase during DNA unwinding and priming in Escherichia coli To Be Published
3IRR	Crystal Structure of a Z-Z junction (with HEPES intercalating) Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DNA (5'-D(*A*CP*CP*GP*CP*GP*CP*GP*AP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*G*TP*CP*GP*CP*GP*CP*GP*TP*CP*GP*CP*GP*CP*G)-3'), ... Authors: Athanasiadis, A, de Rosa, M. Deposit date: 2009-08-24 Release date: 2010-05-19 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Crystal structure of a junction between two Z-DNA helices. Proc.Natl.Acad.Sci.USA, 107, 2010
7QVE	Spinach 20S proteasome Descriptor: Proteasome subunit alpha type, Proteasome subunit alpha type-3, Proteasome subunit beta, ... Authors: Kandolf, S, Grishkovskaya, I, Meinhart, A, Haselbach, D. Deposit date: 2022-01-21 Release date: 2022-05-25 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Cryo-EM structure of the plant 26S proteasome. Plant Commun., 3, 2022
3I6U	Structure and Activation Mechanism of the CHK2 DNA-Damage Checkpoint Kinase Descriptor: Serine/threonine-protein kinase Chk2 Authors: Pavletich, N.P. Deposit date: 2009-07-07 Release date: 2009-11-10 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure and activation mechanism of the CHK2 DNA damage checkpoint kinase. Mol.Cell, 35, 2009
7QEZ	Crystal structure of the SARS-CoV-2 RBD in complex with the ultrapotent antibody CV2.1169 and CR3022 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CR3022 heavy chain, CR3022 light chain, ... Authors: Fernandez, I, Rey, F.A. Deposit date: 2021-12-03 Release date: 2022-05-18 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.89 Å) Cite: Potent human broadly SARS-CoV-2-neutralizing IgA and IgG antibodies effective against Omicron BA.1 and BA.2. J.Exp.Med., 219, 2022
2XVE	Crystal structure of bacterial flavin-containing monooxygenase Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, FLAVIN-CONTAINING MONOOXYGENASE, GLYCEROL, ... Authors: Cho, H.J, Kang, B.S. Deposit date: 2010-10-26 Release date: 2011-05-04 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Structural and Functional Analysis of Bacterial Flavin-Containing Monooxygenase Reveals its Ping-Pong-Type Reaction Mechanism. J.Struct.Biol., 175, 2011
7FAF	S protein of SARS-CoV-2 in complex bound with P36-5D2 (state1) Descriptor: P36-5D2 heavy chain, P36-5D2 light chain, Spike glycoprotein Authors: Zhang, L, Wang, X, Zhang, S, Shan, S. Deposit date: 2021-07-06 Release date: 2021-12-22 Last modified: 2022-02-16 Method: ELECTRON MICROSCOPY (3.69 Å) Cite: A Potent and Protective Human Neutralizing Antibody Against SARS-CoV-2 Variants. Front Immunol, 12, 2021
7AL8	Structure of ATSI with bovine trypsin Descriptor: CALCIUM ION, Cationic trypsin, SULFATE ION, ... Authors: Reverter, D, Covaleda, G. Deposit date: 2020-10-05 Release date: 2021-10-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structure of ATSI with bovine trypsin To Be Published
7TC8	Cryo-EM structure of methane monooxygenase hydroxylase (by graphene) Descriptor: FE (III) ION, Methane monooxygenase component A alpha chain, Methane monooxygenase component A beta chain, ... Authors: Cho, U.S, Kim, B.C. Deposit date: 2021-12-23 Release date: 2023-01-25 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Batch Production of High-Quality Graphene Grids for Cryo-EM: Cryo-EM Structure of Methylococcus capsulatus Soluble Methane Monooxygenase Hydroxylase. Acs Nano, 17, 2023
7FAE	S protein of SARS-CoV-2 in complex bound with P36-5D2(state2) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, P36-5D2 heavy chain, ... Authors: Zhang, L, Wang, X, Shan, S, Zhang, S. Deposit date: 2021-07-06 Release date: 2021-12-22 Last modified: 2022-02-16 Method: ELECTRON MICROSCOPY (3.65 Å) Cite: A Potent and Protective Human Neutralizing Antibody Against SARS-CoV-2 Variants. Front Immunol, 12, 2021
7TCE	Crystal structure of delta sub IV Rhodobacter Sphaeroides bc1 with the antimalarial drug atovaquone. Descriptor: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, 2-[trans-4-(4-chlorophenyl)cyclohexyl]-3-hydroxynaphthalene-1,4-dione, Cytochrome b, ... Authors: Esser, L, Xia, D, Zhou, F. Deposit date: 2021-12-23 Release date: 2023-01-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3.85 Å) Cite: Crystal structure of delta sub IV Rhodobacter Sphaeroides bc1 with the antimalarial drug atovaquone. To Be Published
7ALB	human GCH-GFRP stimulatory complex 7-deaza-GTP bound Descriptor: 7-deaza-GTP, GTP cyclohydrolase 1, GTP cyclohydrolase 1 feedback regulatory protein, ... Authors: Ebenhoch, R, Nar, H. Deposit date: 2020-10-06 Release date: 2021-10-13 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.979 Å) Cite: A hybrid approach reveals the allosteric regulation of GTP cyclohydrolase I. Proc.Natl.Acad.Sci.USA, 117, 2020
3ITF	Structural basis for the inhibitory function of the CPXP adaptor protein Descriptor: Periplasmic adaptor protein cpxP Authors: Scheerer, P, Zhou, X, Krauss, N, Hunke, S. Deposit date: 2009-08-28 Release date: 2011-01-26 Last modified: 2022-12-21 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Structural Basis for Two-component System Inhibition and Pilus Sensing by the Auxiliary CpxP Protein. J.Biol.Chem., 286, 2011
3ITL	Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant D327N in complex with L-rhamnulose Descriptor: 6-deoxy-beta-L-fructofuranose, L-rhamnose isomerase, MANGANESE (II) ION Authors: Yoshida, H, Yamaji, M, Ishii, T, Izumori, K, Kamitori, S. Deposit date: 2009-08-28 Release date: 2010-02-02 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures Febs J., 277, 2010
7SZB	Crystal Structure Analysis of human PRPK complex with a compound Descriptor: 5-amino-2-[(3R)-2,6-dioxopiperidin-3-yl]-1H-isoindole-1,3(2H)-dione, CITRATE ANION, EKC/KEOPS complex subunit TP53RK, ... Authors: Seo, H.-S, Dhe-Paganon, S. Deposit date: 2021-11-27 Release date: 2023-01-25 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Development of PRPK Directed Phthalimides Biorxiv, 2021
7ALQ	human GCH-GFRP inhibitory complex 7-deaza-GTP bound Descriptor: 7,8-DIHYDROBIOPTERIN, 7-deaza-GTP, GTP cyclohydrolase 1, ... Authors: Ebenhoch, R, Nar, H. Deposit date: 2020-10-07 Release date: 2021-10-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.205 Å) Cite: Biophysical and structural investigation of the regulation of human GTP cyclohydrolase I by its regulatory protein GFRP. J.Struct.Biol., 213, 2021
7SVP	Structure of compound 34 bound to human Phospholipase D2 catalytic domain Descriptor: 1-(1-{(2S)-1-[(3R,5R)-3,5-dimethylpiperazin-1-yl]-1-oxopropan-2-yl}piperidin-4-yl)-1,3-dihydro-2H-benzimidazol-2-one, Phospholipase D2 Authors: Metrick, C.M, Chodaparambil, J.V. Deposit date: 2021-11-19 Release date: 2023-01-25 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Discovery of Phospholipase D Inhibitors with Improved Drug-like Properties and Central Nervous System Penetrance. Acs Med.Chem.Lett., 13, 2022
2Y34	S-nitrosylated PHD2 (NO exposed) in complex with Fe(II) and UN9 Descriptor: EGL NINE HOMOLOG 1, FE (II) ION, N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE Authors: Chowdhury, R, McDonough, M.A, Schofield, C.J. Deposit date: 2010-12-18 Release date: 2010-12-29 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Studies on the reaction of nitric oxide with the hypoxia-inducible factor prolyl hydroxylase domain 2 (EGLN1). J. Mol. Biol., 410, 2011
2MY2	Snu17p-Bud13p structure intermediate during RES complex assembly Descriptor: Pre-mRNA-splicing factor CWC26, U2 snRNP component IST3 Authors: Wysoczanski, P, Becker, S, Zweckstetter, M. Deposit date: 2015-01-19 Release date: 2015-08-12 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structures of intermediates during RES complex assembly. Sci Rep, 5, 2015
7QIJ	Complex of the Yersinia enterocolitica Type III secretion export gate YscV with substrate:chaperone complex YscX:YscY Descriptor: Chaperone protein YscY, Low calcium response locus protein D, Yop proteins translocation protein X Authors: Gilzer, D, Niemann, H.H. Deposit date: 2021-12-15 Release date: 2022-06-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (4.1 Å) Cite: Direct interaction of a chaperone-bound type III secretion substrate with the export gate. Nat Commun, 13, 2022
3IUI	Zn2+-bound form of Pseudomonas stutzeri L-rhamnose isomerase Descriptor: L-rhamnose isomerase, ZINC ION Authors: Yoshida, H, Yamaji, M, Ishii, T, Izumori, K, Kamitori, S. Deposit date: 2009-08-31 Release date: 2010-02-02 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures Febs J., 277, 2010
7QIH	Complex of the Yersinia enterocolitica Type III secretion proteins YscX and YscY Descriptor: Chaperone protein YscY, Yop proteins translocation protein X Authors: Gilzer, D, Niemann, H.H. Deposit date: 2021-12-15 Release date: 2022-06-01 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.92 Å) Cite: Direct interaction of a chaperone-bound type III secretion substrate with the export gate. Nat Commun, 13, 2022

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