8ID2
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![BU of 8id2 by Molmil](/molmil-images/mine/8id2) | Crystal structure of the ubiquitin-like domain in the SF3A1 subunit of human U2 snRNP complexed with the stem-loop 4 of U1 snRNA | Descriptor: | RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*CP*GP*UP*UP*CP*GP*CP*GP*CP*UP*UP*UP*CP*CP*CP*C)-3'), Splicing factor 3A subunit 1 | Authors: | Terawaki, S, Nameki, N, Kuwasako, K. | Deposit date: | 2023-02-12 | Release date: | 2023-05-17 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structural insights into recognition of SL4, the UUCG stem-loop, of human U1 snRNA by the ubiquitin-like domain, including the C-terminal tail in the SF3A1 subunit of U2 snRNP. J.Biochem., 174, 2023
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8IPJ
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![BU of 8ipj by Molmil](/molmil-images/mine/8ipj) | Crystal structure of the Legionella effector protein MavL with ADPR-Ub | Descriptor: | MavL, Ubiquitin, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE | Authors: | Ouyang, S, Guan, H. | Deposit date: | 2023-03-14 | Release date: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.003 Å) | Cite: | Crystal structure of the Legionella effector protein MavL with ADPR-Ub To Be Published
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7RMA
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![BU of 7rma by Molmil](/molmil-images/mine/7rma) | Structure of the fourth UIM (Ubiquitin Interacting Motif) of ANKRD13D in complex with a high affinity UbV (Ubiquitin Variant) | Descriptor: | Ankyrin repeat domain-containing protein 13D, SODIUM ION, SULFATE ION, ... | Authors: | Singer, A.U, Manczyk, N, Veggiani, G, Sicheri, F, Sidhu, S.S. | Deposit date: | 2021-07-27 | Release date: | 2022-05-11 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Panel of Engineered Ubiquitin Variants Targeting the Family of Human Ubiquitin Interacting Motifs. Acs Chem.Biol., 17, 2022
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7S6O
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![BU of 7s6o by Molmil](/molmil-images/mine/7s6o) | The crystal structure of Lys48-linked di-ubiquitin | Descriptor: | ACETATE ION, Ubiquitin | Authors: | Osipiuk, J, Tesar, C, Lanham, B.T, Wydorski, P, Fushman, D, Joachimiak, L, Joachimiak, A. | Deposit date: | 2021-09-14 | Release date: | 2021-09-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.25 Å) | Cite: | Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin. Nat Commun, 14, 2023
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7S6P
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![BU of 7s6p by Molmil](/molmil-images/mine/7s6p) | The crystal structure of human ISG15 | Descriptor: | Ubiquitin-like protein ISG15 | Authors: | Osipiuk, J, Tesar, C, Jedrzejczak, R, Endres, M, Wydorski, P, Joachimiak, L, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) | Deposit date: | 2021-09-14 | Release date: | 2021-09-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin. Nat Commun, 14, 2023
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5K9P
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![BU of 5k9p by Molmil](/molmil-images/mine/5k9p) | Ser20 phosphorylated ubiquitin | Descriptor: | Polyubiquitin-B | Authors: | Huguenin-Dezot, N, Chin, J.W. | Deposit date: | 2016-06-01 | Release date: | 2016-07-20 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Synthesis of Isomeric Phosphoubiquitin Chains Reveals that Phosphorylation Controls Deubiquitinase Activity and Specificity. Cell Rep, 16, 2016
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5KHY
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![BU of 5khy by Molmil](/molmil-images/mine/5khy) | Crystal structure of oxime-linked K6 diubiquitin | Descriptor: | ETHANOLAMINE, Polyubiquitin-B, ZINC ION | Authors: | Stanley, M, Virdee, S. | Deposit date: | 2016-06-16 | Release date: | 2016-09-14 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (3.501 Å) | Cite: | Genetically Directed Production of Recombinant, Isosteric and Nonhydrolysable Ubiquitin Conjugates. Chembiochem, 17, 2016
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5J8P
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![BU of 5j8p by Molmil](/molmil-images/mine/5j8p) | Lys27-linked diubiquitin | Descriptor: | D-ubiquitin, MAGNESIUM ION, ubiquitin | Authors: | Pan, M, Gao, S, Zheng, Y. | Deposit date: | 2016-04-08 | Release date: | 2016-05-18 | Last modified: | 2022-02-09 | Method: | X-RAY DIFFRACTION (1.554 Å) | Cite: | Structure of Lys27-linked diubiquitin To Be Published
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5JZE
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![BU of 5jze by Molmil](/molmil-images/mine/5jze) | Erve virus viral OTU domain protease in complex with mouse ISG15 | Descriptor: | CITRATE ANION, RNA-dependent RNA polymerase, Ubiquitin-like protein ISG15, ... | Authors: | Deaton, M.K, Dzimianski, J.V, Pegan, S.D. | Deposit date: | 2016-05-16 | Release date: | 2016-10-19 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (2.47 Å) | Cite: | Biochemical and Structural Insights into the Preference of Nairoviral DeISGylases for Interferon-Stimulated Gene Product 15 Originating from Certain Species. J.Virol., 90, 2016
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5JBY
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![BU of 5jby by Molmil](/molmil-images/mine/5jby) | Lys27-linked triubiquitin | Descriptor: | D-ubiquitin, ubiquitin | Authors: | Pan, M, Gao, S, Zheng, Y. | Deposit date: | 2016-04-14 | Release date: | 2016-07-20 | Last modified: | 2022-02-09 | Method: | X-RAY DIFFRACTION (1.987 Å) | Cite: | Structure of Lys27-linked triubiquitin To Be Published
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5JBV
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![BU of 5jbv by Molmil](/molmil-images/mine/5jbv) | Lys27-linked triubiquitin | Descriptor: | D-ubiquitin, NITRATE ION, Ubiquitin | Authors: | Pan, M, Gao, S, Zheng, Y. | Deposit date: | 2016-04-13 | Release date: | 2016-05-18 | Last modified: | 2022-02-09 | Method: | X-RAY DIFFRACTION (2.104 Å) | Cite: | Structure of Lys27-linked triubiquitin To Be Published
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6GF1
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![BU of 6gf1 by Molmil](/molmil-images/mine/6gf1) | The structure of the ubiquitin-like modifier FAT10 reveals a novel targeting mechanism for degradation by the 26S proteasome | Descriptor: | SULFATE ION, Ubiquitin D | Authors: | Aichem, A, Anders, S, Catone, N, Roessler, P, Stotz, S, Berg, A, Schwab, R, Scheuermann, S, Bialas, J, Schmidtke, G, Peter, C, Groettrup, M, Wiesner, S. | Deposit date: | 2018-04-28 | Release date: | 2018-08-29 | Last modified: | 2024-05-15 | Method: | X-RAY DIFFRACTION (1.925 Å) | Cite: | The structure of the ubiquitin-like modifier FAT10 reveals an alternative targeting mechanism for proteasomal degradation. Nat Commun, 9, 2018
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6GF2
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![BU of 6gf2 by Molmil](/molmil-images/mine/6gf2) | The structure of the ubiquitin-like modifier FAT10 reveals a novel targeting mechanism for degradation by the 26S proteasome | Descriptor: | Ubiquitin D | Authors: | Aichem, A, Anders, S, Catone, N, Roessler, P, Stotz, S, Berg, A, Schwab, R, Scheuermann, S, Bialas, J, Schmidtke, G, Peter, C, Groettrup, M, Wiesner, S. | Deposit date: | 2018-04-29 | Release date: | 2018-08-08 | Last modified: | 2024-06-19 | Method: | SOLUTION NMR | Cite: | The structure of the ubiquitin-like modifier FAT10 reveals an alternative targeting mechanism for proteasomal degradation. Nat Commun, 9, 2018
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8T48
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![BU of 8t48 by Molmil](/molmil-images/mine/8t48) | |
8CMR
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![BU of 8cmr by Molmil](/molmil-images/mine/8cmr) | Linear specific OTU-type DUB SnOTU from the pathogen S. negenvensis in complex with linear di-ubiquitin | Descriptor: | OTU domain-containing protein, Polyubiquitin-B | Authors: | Uthoff, M, Hermanns, T, Boll, V, Hofmann, K, Baumann, U. | Deposit date: | 2023-02-21 | Release date: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.24 Å) | Cite: | Functional and structural diversity in deubiquitinases of the Chlamydia-like bacterium Simkania negevensis. Nat Commun, 14, 2023
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8DMB
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![BU of 8dmb by Molmil](/molmil-images/mine/8dmb) | Structure of Desulfovirgula thermocuniculi IsrB (DtIsrB) in complex with omega RNA and target DNA | Descriptor: | MAGNESIUM ION, Ubiquitin-like protein SMT3,IsrB protein,monomeric superfolder Green Fluorescent Protein, non-target DNA, ... | Authors: | Seiichi, H, Kappel, K, Zhang, F. | Deposit date: | 2022-07-08 | Release date: | 2022-10-19 | Last modified: | 2024-06-12 | Method: | ELECTRON MICROSCOPY (3.1 Å) | Cite: | Structure of the OMEGA nickase IsrB in complex with omega RNA and target DNA. Nature, 610, 2022
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2KAN
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![BU of 2kan by Molmil](/molmil-images/mine/2kan) | Solution NMR structure of ubiquitin-like domain of Arabidopsis thaliana protein At2g32350. Northeast Structural Genomics Consortium target AR3433A | Descriptor: | uncharacterized protein ar3433a | Authors: | Eletsky, A, Mills, J.L, Sukumaran, D, Hua, J, Shastry, R, Jiang, M, Ciccosanti, C, Xiao, R, Liu, J, Everret, J.K, Swapna, G.V.T, Acton, T.B, Rost, B, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG) | Deposit date: | 2008-11-11 | Release date: | 2008-11-25 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution NMR structure of ubiquitin-like domain of Arabidopsis thaliana protein At2g32350. To be Published
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2KDB
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![BU of 2kdb by Molmil](/molmil-images/mine/2kdb) | Solution Structure of human ubiquitin-like domain of Herpud2_9_85, Northeast Structural Genomics Consortium (NESG) target HT53A | Descriptor: | Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein | Authors: | Wu, B, Yee, A, Fares, C, Lemak, A, Gutmanas, A, Doherty, R, Semesi, A, Dhe-Paganon, S, Arrowsmith, C, Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC) | Deposit date: | 2009-01-06 | Release date: | 2009-02-10 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structure of human homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 2 (Herpud2 or Herp) To be Published
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2KTF
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![BU of 2ktf by Molmil](/molmil-images/mine/2ktf) | |
2KO3
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![BU of 2ko3 by Molmil](/molmil-images/mine/2ko3) | Nedd8 solution structure | Descriptor: | NEDD8 | Authors: | Choi, Y.S, Jeon, Y.H, Cheong, C. | Deposit date: | 2009-09-09 | Release date: | 2009-11-03 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | 60th residues of ubiquitin and Nedd8 are located out of E2-binding surfaces, but are important for K48 ubiquitin-linkage. Febs Lett., 583, 2009
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2KOX
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![BU of 2kox by Molmil](/molmil-images/mine/2kox) | NMR residual dipolar couplings identify long range correlated motions in the backbone of the protein ubiquitin | Descriptor: | Ubiquitin | Authors: | Fenwick, R.B, Richter, B, Lee, D, Walter, K.F.A, Milovanovic, D, Becker, S, Lakomek, N.A, Griesinger, C, Salvatella, X. | Deposit date: | 2009-10-02 | Release date: | 2011-06-08 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Weak Long-Range Correlated Motions in a Surface Patch of Ubiquitin Involved in Molecular Recognition J.Am.Chem.Soc., 2011
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2KX3
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![BU of 2kx3 by Molmil](/molmil-images/mine/2kx3) | |
2KWU
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![BU of 2kwu by Molmil](/molmil-images/mine/2kwu) | Solution Structure of UBM2 of murine Polymerase iota in Complex with Ubiquitin | Descriptor: | DNA polymerase iota, Ubiquitin | Authors: | Burschowsky, D, Rudolf, F, Rabut, G, Herrmann, T, Peter, M, Wider, G. | Deposit date: | 2010-04-19 | Release date: | 2010-10-06 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structural analysis of the conserved ubiquitin-binding motifs (UBMs) of the translesion polymerase iota in complex with ubiquitin. J.Biol.Chem., 286, 2011
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2KD0
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![BU of 2kd0 by Molmil](/molmil-images/mine/2kd0) | NMR solution structure of O64736 protein from Arabidopsis thaliana. Northeast Structural Genomics Consortium MEGA Target AR3445A | Descriptor: | LRR repeats and ubiquitin-like domain-containing protein At2g30105 | Authors: | Swapna, G.V.T, Shastry, R, Foote, E, Ciccosanti, C, Jiang, M, Xiao, R, Nair, R, Everett, J, Huang, Y, Acton, T.B, Rost, B, Montelione, G.T, Northeast Structural Genomics Consortium (NESG) | Deposit date: | 2008-12-31 | Release date: | 2009-02-10 | Last modified: | 2024-05-08 | Method: | SOLUTION NMR | Cite: | NMR solution structure of O64736 protein from Arabidopsis thaliana To be Published
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2KWV
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![BU of 2kwv by Molmil](/molmil-images/mine/2kwv) | Solution Structure of UBM1 of murine Polymerase iota in Complex with Ubiquitin | Descriptor: | DNA polymerase iota, Ubiquitin | Authors: | Burschowsky, D, Rudolf, F, Rabut, G, Herrmann, T, Peter, M, Wider, G. | Deposit date: | 2010-04-20 | Release date: | 2010-10-06 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structural analysis of the conserved ubiquitin-binding motifs (UBMs) of the translesion polymerase iota in complex with ubiquitin. J.Biol.Chem., 286, 2011
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