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6EMT
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BU of 6emt by Molmil
Crystal Structure of dual specific Trm10 construct from Thermococcus kodakaraensis.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, GLYCEROL, ...
Authors:Singh, R.K, Versees, W.
Deposit date:2017-10-03
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.794 Å)
Cite:Structural and biochemical analysis of the dual-specificity Trm10 enzyme fromThermococcus kodakaraensisprompts reconsideration of its catalytic mechanism.
RNA, 24, 2018
6EMV
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BU of 6emv by Molmil
Crystal Structure of dual specific Trm10 construct from Thermococcus kodakaraensis.
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, tRNA (guanine(9)-/adenine(9)-N1)-methyltransferase
Authors:Singh, R.K, Versees, W.
Deposit date:2017-10-03
Release date:2018-06-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.9000144 Å)
Cite:Structural and biochemical analysis of the dual-specificity Trm10 enzyme fromThermococcus kodakaraensisprompts reconsideration of its catalytic mechanism.
RNA, 24, 2018
5C7U
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BU of 5c7u by Molmil
5'-monophosphate wt Guanine Riboswitch bound to hypoxanthine.
Descriptor: 5'-monophosphate wt guanine riboswitch, COBALT HEXAMMINE(III), HYPOXANTHINE
Authors:Hernandez, A.R, Shao, Y, Hoshika, S, Yang, Z, Shelke, S.A, Herrou, J, Kim, H.-J, Kim, M.-J, Piccirilli, J.A, Benner, S.A.
Deposit date:2015-06-24
Release date:2015-08-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:A Crystal Structure of a Functional RNA Molecule Containing an Artificial Nucleobase Pair.
Angew.Chem.Int.Ed.Engl., 54, 2015
6EMU
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BU of 6emu by Molmil
Crystal Structure of dual specific Trm10 construct from Thermococcus kodakaraensis.
Descriptor: GLYCEROL, S-ADENOSYLMETHIONINE, tRNA (guanine(9)-/adenine(9)-N1)-methyltransferase
Authors:Singh, R.K, Versees, W.
Deposit date:2017-10-03
Release date:2018-06-13
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.29745436 Å)
Cite:Structural and biochemical analysis of the dual-specificity Trm10 enzyme fromThermococcus kodakaraensisprompts reconsideration of its catalytic mechanism.
RNA, 24, 2018
1FHK
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BU of 1fhk by Molmil
NMR STRUCTURE OF THE 690 LOOP OF 16 S RRNA OF E. COLI
Descriptor: RNA (5'-R(*GP*GP*CP*GP*GP*UP*GP*AP*AP*AP*UP*GP*CP*C)-3')
Authors:Morosyuk, S.V, Cunningham, P.R, SantaLucia Jr, J.
Deposit date:2000-08-01
Release date:2001-03-21
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA. II. NMR solution structure.
J.Mol.Biol., 307, 2001
5C7W
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BU of 5c7w by Molmil
5'-monophosphate Z:P Guanine Riboswitch bound to hypoxanthine.
Descriptor: 5'-monophosphate Z:P guanine riboswitch, COBALT HEXAMMINE(III), HYPOXANTHINE
Authors:Hernandez, A.R, Shao, Y, Hoshika, S, Yang, Z, Shelke, S.A, Herrou, J, Kim, H.-J, Kim, M.-J, Piccirilli, J.A, Benner, S.A.
Deposit date:2015-06-25
Release date:2015-08-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:A Crystal Structure of a Functional RNA Molecule Containing an Artificial Nucleobase Pair.
Angew.Chem.Int.Ed.Engl., 54, 2015
6VU1
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BU of 6vu1 by Molmil
Cap3G-TAR-F1 is an RNA hairpin. The 1H-1H NOESY data was collected at 308 K in 10 mM KH2PO4 pH 7.4.
Descriptor: RNA (34-MER)
Authors:Summers, M.F, Brown, J.D.
Deposit date:2020-02-14
Release date:2020-04-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis for transcriptional start site control of HIV-1 RNA fate.
Science, 368, 2020
2JXV
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BU of 2jxv by Molmil
Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans
Descriptor: RNA (33-MER)
Authors:Cevec, M, Thibaudeau, C, Plavec, J.
Deposit date:2007-11-30
Release date:2008-04-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of a let-7 miRNA:lin-41 mRNA complex from C. elegans.
Nucleic Acids Res., 36, 2008
5XJ2
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BU of 5xj2 by Molmil
Structure of spRlmCD with U747 RNA
Descriptor: RNA (5'-R(*GP*GP*CP*AP*CP*GP*UP*GP*CP*U)-3'), S-ADENOSYL-L-HOMOCYSTEINE, Uncharacterized RNA methyltransferase SP_1029, ...
Authors:Jiang, Y, Gong, Q.
Deposit date:2017-04-28
Release date:2017-11-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:Structural insights into substrate selectivity of ribosomal RNA methyltransferase RlmCD
PLoS ONE, 12, 2017
2KPV
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BU of 2kpv by Molmil
NMR model of the first let-7 miRNA complementary site (LCS1) in 3'-UTR of lin-41 mRNA from C. elegans
Descriptor: RNA (34-MER)
Authors:Cevec, M, Thibaudeau, C, Plavec, J.
Deposit date:2009-10-20
Release date:2010-08-04
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:NMR structure of the let-7 miRNA interacting with the site LCS1 of lin-41 mRNA from Caenorhabditis elegans.
Nucleic Acids Res., 38, 2010
5I9D
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BU of 5i9d by Molmil
Crystal structure of designed pentatricopeptide repeat protein dPPR-U8A2 in complex with its target RNA U8A2
Descriptor: RNA (5'-R(*GP*GP*GP*G*UP*UP*UP*UP*AP*AP*UP*UP*UP*UP*CP*CP*CP*C)-3'), pentatricopeptide repeat protein dPPR-U8A2
Authors:Shen, C, Zhang, D, Guan, Z, Zou, T, Yin, P.
Deposit date:2016-02-20
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.596 Å)
Cite:Structural basis for specific single-stranded RNA recognition by designer pentatricopeptide repeat proteins.
Nat Commun, 7, 2016
7F3E
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BU of 7f3e by Molmil
Cryo-EM structure of the minimal protein-only RNase P from Aquifex aeolicus
Descriptor: RNA-free ribonuclease P
Authors:Teramoto, T, Koyasu, T, Adachi, N, Kawasaki, M, Moriya, T, Numata, T, Senda, T, Kakuta, Y.
Deposit date:2021-06-16
Release date:2021-08-11
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Minimal protein-only RNase P structure reveals insights into tRNA precursor recognition and catalysis.
J.Biol.Chem., 297, 2021
2GJW
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BU of 2gjw by Molmil
RNA Recognition and Cleavage by an Splicing Endonuclease
Descriptor: 5'-R(*AP*GP*GP*UP*CP*GP*C)-3', 5'-R(*GP*CP*GP*AP*CP*CP*GP*AP*CP*CP*AP*(DU)P*AP*GP*CP*UP*GP*CP*A)-3', 5'-R(*UP*GP*CP*AP*GP*CP*GP*GP*UP*CP*AP*(A23))-3', ...
Authors:Xue, S, Calvin, K, Li, H.
Deposit date:2006-03-31
Release date:2006-09-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:RNA Recognition and Cleavage by an Splicing Endonuclease
Science, 312, 2006
5I9H
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BU of 5i9h by Molmil
Crystal structure of designed pentatricopeptide repeat protein dPPR-U8G2 in complex with its target RNA U8G2
Descriptor: RNA (5'-R(*GP*GP*GP*GP*UP*UP*UP*UP*GP*GP*UP*UP*UP*UP*CP*CP*CP*C)-3'), pentatricopeptide repeat protein dPPR-U8G2
Authors:Shen, C, Zhang, D, Guan, Z, Zou, T, Yin, P.
Deposit date:2016-02-20
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.504 Å)
Cite:Structural basis for specific single-stranded RNA recognition by designer pentatricopeptide repeat proteins.
Nat Commun, 7, 2016
5I9G
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BU of 5i9g by Molmil
Crystal structure of designed pentatricopeptide repeat protein dPPR-U8C2 in complex with its target RNA U8C2
Descriptor: RNA (5'-R(*GP*GP*G*GP*UP*UP*UP*UP*CP*CP*UP*UP*UP*UP*CP*CP*CP*C)-3'), pentatricopeptide repeat protein dPPR-U8C2
Authors:Shen, C, Zhang, D, Guan, Z, Zou, T, Yin, P.
Deposit date:2016-02-20
Release date:2016-04-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.288 Å)
Cite:Structural basis for specific single-stranded RNA recognition by designer pentatricopeptide repeat proteins.
Nat Commun, 7, 2016
5I9F
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BU of 5i9f by Molmil
Crystal structure of designed pentatricopeptide repeat protein dPPR-U10 in complex with its target RNA U10
Descriptor: RNA (5'-R(*GP*GP*GP*GP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*CP*CP*CP*C)-3'), pentatricopeptide repeat protein dPPR-U10
Authors:Shen, C, Zhang, D, Guan, Z, Zou, T, Yin, Y.
Deposit date:2016-02-20
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.194 Å)
Cite:Structural basis for specific single-stranded RNA recognition by designer pentatricopeptide repeat proteins.
Nat Commun, 7, 2016
3B0V
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BU of 3b0v by Molmil
tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA
Descriptor: FLAVIN MONONUCLEOTIDE, tRNA, tRNA-dihydrouridine synthase
Authors:Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I.
Deposit date:2011-06-14
Release date:2011-12-14
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Molecular basis of dihydrouridine formation on tRNA
Proc.Natl.Acad.Sci.USA, 108, 2011
6BJH
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BU of 6bjh by Molmil
CIRV p19 mutant T111S in complex with siRNA
Descriptor: RNA (5'-R(P*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*AP*UP*U)-3'), RNA (5'-R(P*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*GP*UP*U)-3'), RNA silencing suppressor p19
Authors:Foss, D.V, Schirle, N.T, MacRae, I.J, Pezacki, J.P.
Deposit date:2017-11-06
Release date:2019-01-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Structural insights into interactions between viral suppressor of RNA silencing protein p19 mutants and small RNAs.
Febs Open Bio, 9, 2019
6E4P
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BU of 6e4p by Molmil
Structure of the T. brucei RRM domain in complex with RNA
Descriptor: RNA (5'-R(P*UP*UP*UP*U)-3'), RNA-binding protein, putative
Authors:Schumacher, M.A.
Deposit date:2018-07-18
Release date:2018-12-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.949 Å)
Cite:The RRM of the kRNA-editing protein TbRGG2 uses multiple surfaces to bind and remodel RNA.
Nucleic Acids Res., 47, 2019
2IZ8
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BU of 2iz8 by Molmil
MS2-RNA HAIRPIN (C-7) COMPLEX
Descriptor: MS2 COAT PROTEIN, RNA, (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*CP*UP*CP* AP*CP*CP*CP*AP*UP*GP*U)-3')
Authors:Helgstrand, C, Grahn, E, Stonehouse, N.J, Stockley, P.G, Liljas, L.
Deposit date:2006-07-25
Release date:2006-07-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Investigating the Structural Basis of Purine Specificity in the Structures of MS2 Coat Protein RNA Translational Operator Hairpins
Nucleic Acids Res., 30, 2002
1BGZ
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BU of 1bgz by Molmil
S8 RRNA BINDING SITE FROM E. COLI, NMR, 6 STRUCTURES
Descriptor: RNA
Authors:Kalurachchi, K, Nikonowicz, E.P.
Deposit date:1998-06-03
Release date:1999-01-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:NMR structure determination of the binding site for ribosomal protein S8 from Escherichia coli 16 S rRNA.
J.Mol.Biol., 280, 1998
7E8K
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BU of 7e8k by Molmil
Crystal structure of Proteinaceous RNase P (PRORP) from Planctomycetes bacterium GWF2_40_8
Descriptor: RNA-free ribonuclease P, SULFATE ION
Authors:Li, Y.Y, Gan, J.H.
Deposit date:2021-03-02
Release date:2022-03-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structures and insights into precursor tRNA 5'-end processing by prokaryotic minimal protein-only RNase P.
Nat Commun, 13, 2022
7E8J
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BU of 7e8j by Molmil
Crystal structure of Proteinaceous RNase P (PRORP) from Thermococcus celer
Descriptor: RNA-free ribonuclease P
Authors:Li, Y.Y, Gan, J.H.
Deposit date:2021-03-02
Release date:2022-03-02
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures and insights into precursor tRNA 5'-end processing by prokaryotic minimal protein-only RNase P.
Nat Commun, 13, 2022
7D58
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BU of 7d58 by Molmil
cryo-EM structure of human RNA polymerase III in elongating state
Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ...
Authors:Wang, Q, Wan, F, Lan, P, Wu, J, Lei, M.
Deposit date:2020-09-25
Release date:2021-02-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural insights into transcriptional regulation of human RNA polymerase III.
Nat.Struct.Mol.Biol., 28, 2021
1SZ1
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BU of 1sz1 by Molmil
Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexes
Descriptor: T-RNA (76-MER), tRNA nucleotidyltransferase
Authors:Xiong, Y, Steitz, T.A.
Deposit date:2004-04-02
Release date:2004-08-10
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (6.21 Å)
Cite:Mechanism of transfer RNA maturation by CCA-adding enzyme without using an oligonucleotide template.
Nature, 430, 2004

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