Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6JCR
DownloadVisualize
BU of 6jcr by Molmil
AAV1 in neutral condition at 3.07 Ang
Descriptor: Capsid protein
Authors:Lou, Z, Zhang, R.
Deposit date:2019-01-30
Release date:2019-10-23
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Divergent engagements between adeno-associated viruses with their cellular receptor AAVR.
Nat Commun, 10, 2019
6SD4
DownloadVisualize
BU of 6sd4 by Molmil
Structure of the RBM3/collar region of the Salmonella flagella MS-ring protein FliF with 34-fold symmetry applied
Descriptor: Flagellar M-ring protein
Authors:Johnson, S, Fong, Y.H, Deme, J.C, Furlong, E.J, Kuhlen, L, Lea, S.M.
Deposit date:2019-07-26
Release date:2020-03-18
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Symmetry mismatch in the MS-ring of the bacterial flagellar rotor explains the structural coordination of secretion and rotation.
Nat Microbiol, 5, 2020
1WZI
DownloadVisualize
BU of 1wzi by Molmil
Structural basis for alteration of cofactor specificity of Malate dehydrogenase from Thermus flavus
Descriptor: Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
Deposit date:2005-03-05
Release date:2006-03-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for alteration of cofactor specificity of malate dehydrogenase from Thermus flavus
to be published
7C1Z
DownloadVisualize
BU of 7c1z by Molmil
ATP bound structure of Pseudouridine kinase (PUKI) from Arabidopsis thaliana
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PfkB-like carbohydrate kinase family protein, ...
Authors:Kim, S.H, Rhee, S.
Deposit date:2020-05-06
Release date:2020-11-18
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.09617043 Å)
Cite:Structural basis for the substrate specificity and catalytic features of pseudouridine kinase from Arabidopsis thaliana.
Nucleic Acids Res., 49, 2021
8R3C
DownloadVisualize
BU of 8r3c by Molmil
Cocrystal form II of the Pent - sulfonato-calix[8]arene complex
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, Beta propeller, sulfonato-calix[8]arene
Authors:Flood, R.J, Crowley, P.B.
Deposit date:2023-11-08
Release date:2024-03-06
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Multivalent Calixarene Complexation of a Designed Pentameric Lectin.
Biomacromolecules, 25, 2024
6B6B
DownloadVisualize
BU of 6b6b by Molmil
Beta-Lactamase, unmixed needles crystal form
Descriptor: Beta-lactamase
Authors:Pandey, S, Schmidt, M.
Deposit date:2017-10-01
Release date:2018-06-27
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Enzyme intermediates captured "on the fly" by mix-and-inject serial crystallography.
BMC Biol., 16, 2018
8G6I
DownloadVisualize
BU of 8g6i by Molmil
Coagulation factor VIII bound to a patient-derived anti-C1 domain antibody inhibitor
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Coagulation factor VIII chimera from human and pig, NB33 heavy chain, ...
Authors:Childers, K.C, Davulcu, O, Haynes, R.M, Lollar, P, Doering, C.B, Coxon, C.H, Spiegel, P.C.
Deposit date:2023-02-15
Release date:2023-05-24
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (4.23 Å)
Cite:Structure of coagulation factor VIII bound to a patient-derived anti-C1 domain antibody inhibitor.
Blood, 142, 2023
1TTI
DownloadVisualize
BU of 1tti by Molmil
THREE NEW CRYSTAL STRUCTURES OF POINT MUTATION VARIANTS OF MONOTIM: CONFORMATIONAL FLEXIBILITY OF LOOP-1,LOOP-4 AND LOOP-8
Descriptor: 2-PHOSPHOGLYCOLIC ACID, TRIOSEPHOSPHATE ISOMERASE
Authors:Radha Kishan, K.V, Wierenga, R.K.
Deposit date:1995-04-19
Release date:1995-10-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Three new crystal structures of point mutation variants of monoTIM: conformational flexibility of loop-1, loop-4 and loop-8.
Structure, 3, 1995
6MS4
DownloadVisualize
BU of 6ms4 by Molmil
Crystal structure of the DENR-MCT-1 complex
Descriptor: Density-regulated protein, GLYCEROL, Malignant T-cell-amplified sequence 1, ...
Authors:Lomakin, I.B, Steitz, T.A, Dmitriev, S.E.
Deposit date:2018-10-16
Release date:2019-01-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Crystal structure of the DENR-MCT-1 complex revealed zinc-binding site essential for heterodimer formation.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
7BTL
DownloadVisualize
BU of 7btl by Molmil
Mevo lectin complex with mannopentose
Descriptor: GLYCEROL, alpha-D-mannopyranose, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose, ...
Authors:Sivaji, N, Suguna, K, Surolia, A, Vijayan, M.
Deposit date:2020-04-01
Release date:2021-02-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and related studies on Mevo lectin from Methanococcus voltae A3: the first thorough characterization of an archeal lectin and its interactions.
Glycobiology, 31, 2021
6J9B
DownloadVisualize
BU of 6j9b by Molmil
Arabidopsis FUS3-DNA complex
Descriptor: B3 domain-containing transcription factor FUS3, DNA (5'-D(*AP*AP*TP*CP*CP*AP*TP*GP*CP*AP*GP*AP*AP*TP*C)-3'), DNA (5'-D(*AP*TP*TP*CP*TP*GP*CP*AP*TP*GP*GP*AP*TP*TP*G)-3')
Authors:Hu, H, Du, J.
Deposit date:2019-01-22
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis.
Nat.Plants, 5, 2019
7BWX
DownloadVisualize
BU of 7bwx by Molmil
Crystal structure of ice-binding protein from an Antarctic ascomycete, Antarctomyces psychrotrophicus.
Descriptor: GLYCEROL, Ice-binding protein isoform1a, SULFATE ION
Authors:Yamauchi, A, Arai, T, Kondo, H, Tsuda, S.
Deposit date:2020-04-16
Release date:2020-05-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes.
Biomolecules, 10, 2020
8SBH
DownloadVisualize
BU of 8sbh by Molmil
YeiE effector binding domain from E. coli
Descriptor: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
Authors:Momany, C, Nune, M, Brondani, J.C, Afful, D, Neidle, E.
Deposit date:2023-04-03
Release date:2024-04-17
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:FinR, a LysR-type transcriptional regulator involved in sulfur homeostasis with homologs in diverse microorganisms
To Be Published
6B9F
DownloadVisualize
BU of 6b9f by Molmil
Human ATL1 mutant - F151S bound to GDPAlF4-
Descriptor: Atlastin-1, GLYCEROL, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:O'Donnell, J.P, Sondermann, H.
Deposit date:2017-10-10
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A hereditary spastic paraplegia-associated atlastin variant exhibits defective allosteric coupling in the catalytic core.
J. Biol. Chem., 293, 2018
7L3L
DownloadVisualize
BU of 7l3l by Molmil
Structure of TRAF5 and TRAF6 RING Hetero dimer
Descriptor: TNF receptor-associated factor 5, TNF receptor-associated factor 6, ZINC ION
Authors:Das, A, Middleton, A.J, Padala, P, Day, C.L.
Deposit date:2020-12-17
Release date:2021-02-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The structure and ubiquitin binding properties of TRAF RING heterodimers.
J.Mol.Biol., 2021
6JC0
DownloadVisualize
BU of 6jc0 by Molmil
Structural analysis of molybdopterin synthases from two mycobacteria pathogens
Descriptor: Putative molybdenum cofactor biosynthesis protein, Putative molybdenum cofactor biosynthesis protein D2 (MoaD2) / thiamine S
Authors:Liu, X, Wang, H.Y.
Deposit date:2019-01-27
Release date:2019-02-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural analysis of molybdopterin synthases from two mycobacterial pathogens.
Biochem. Biophys. Res. Commun., 511, 2019
8G5D
DownloadVisualize
BU of 8g5d by Molmil
Structure of ACLY-D1026A-products, local refinement of ASH domain
Descriptor: (3S)-citryl-Coenzyme A, ACETYL COENZYME *A, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Wei, X, Marmorstein, R.
Deposit date:2023-02-13
Release date:2023-05-10
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Allosteric role of the citrate synthase homology domain of ATP citrate lyase.
Nat Commun, 14, 2023
5MEC
DownloadVisualize
BU of 5mec by Molmil
Crystal structure of yeast Cdt1 middle domain (residues 294-433)
Descriptor: Cell division cycle protein CDT1
Authors:Pye, V.E, Frigola, J, Diffley, J.F.X, Cherepanov, P.
Deposit date:2016-11-14
Release date:2017-05-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Cdt1 stabilizes an open MCM ring for helicase loading.
Nat Commun, 8, 2017
6SW5
DownloadVisualize
BU of 6sw5 by Molmil
Crystal structure of the human S-adenosylmethionine synthetase 1 (ligand-free form)
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, S-adenosylmethionine synthase isoform type-1
Authors:Panmanee, J, Antoyuk, S.V, Hasnain, S.S.
Deposit date:2019-09-19
Release date:2020-06-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis of the dominant inheritance of hypermethioninemia associated with the Arg264His mutation in the MAT1A gene.
Acta Crystallogr D Struct Biol, 76, 2020
5JGP
DownloadVisualize
BU of 5jgp by Molmil
Crystal structure of the nitrate/nitrite sensor NarQ fragment bound with iodide ions
Descriptor: IODIDE ION, NITRATE ION, Nitrate/nitrite sensor protein NarQ
Authors:Melnikov, I, Polovinkin, V, Popov, A, Gordeliy, V.
Deposit date:2016-04-20
Release date:2017-05-31
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Fast iodide-SAD phasing for high-throughput membrane protein structure determination.
Sci Adv, 3, 2017
7BWY
DownloadVisualize
BU of 7bwy by Molmil
Crystal structure of ice-binding protein from an Antarctic ascomycete, Antarctomyces psychrotrophicus.
Descriptor: GLYCEROL, Ice-binding protein isoform1a
Authors:Yamauchi, A, Arai, T, Kondo, H, Tsuda, S.
Deposit date:2020-04-16
Release date:2020-05-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes.
Biomolecules, 10, 2020
5MF7
DownloadVisualize
BU of 5mf7 by Molmil
New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-GADD45)
Descriptor: Cellular tumor antigen p53, DI(HYDROXYETHYL)ETHER, DNA, ...
Authors:Rozenberg, H, Diskin-Posner, Y, Golovenko, D, Shakked, Z.
Deposit date:2016-11-17
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins.
Structure, 26, 2018
1BMD
DownloadVisualize
BU of 1bmd by Molmil
DETERMINANTS OF PROTEIN THERMOSTABILITY OBSERVED IN THE 1.9 ANGSTROMS CRYSTAL STRUCTURE OF MALATE DEHYDROGENASE FROM THE THERMOPHILIC BACTERIUM THERMUS FLAVUS
Descriptor: MALATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Kelly, C.A, Birktoft, J.J.
Deposit date:1992-11-10
Release date:1994-07-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Determinants of protein thermostability observed in the 1.9-A crystal structure of malate dehydrogenase from the thermophilic bacterium Thermus flavus.
Biochemistry, 32, 1993
7KMZ
DownloadVisualize
BU of 7kmz by Molmil
Cryo-EM structure of double ACE2-bound SARS-CoV-2 trimer Spike at pH 7.4
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ...
Authors:Gorman, J, Kwong, P.D, Shapiro, L.
Deposit date:2020-11-03
Release date:2020-12-09
Last modified:2021-12-15
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Cryo-EM Structures of SARS-CoV-2 Spike without and with ACE2 Reveal a pH-Dependent Switch to Mediate Endosomal Positioning of Receptor-Binding Domains.
Cell Host Microbe, 28, 2020
8AXX
DownloadVisualize
BU of 8axx by Molmil
Expanded Coxsackievirus A9 after treatment with endosomal ionic buffer
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3
Authors:Domanska, A, Plavec, Z, Ruokolainen, V, Loflund, B, Marjomaki, V.S, Butcher, S.J.
Deposit date:2022-09-01
Release date:2022-10-19
Last modified:2023-02-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural Studies Reveal that Endosomal Cations Promote Formation of Infectious Coxsackievirus A9 A-Particles, Facilitating RNA and VP4 Release.
J.Virol., 96, 2022

222624

건을2024-07-17부터공개중

PDB statisticsPDBj update infoContact PDBjnumon