PDB: 224004 resultsInfo pagesStatus searchChemie searchBIRD

---

8PKX	Kelch domain of KEAP1 in complex with a ortho-dimethylbenzene linked cyclic peptide 11 (ortho-WRCNPETaEC). Descriptor: (2-methylphenyl)methanol, 1,2-ETHANEDIOL, CHLORIDE ION, ... Authors: Braun, M.B, Bischof, L, Hartmann, M.D. Deposit date: 2023-06-27 Release date: 2023-11-15 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Computational Prediction of Cyclic Peptide Structural Ensembles and Application to the Design of Keap1 Binders. J.Chem.Inf.Model., 63, 2023
8PKU	Kelch domain of KEAP1 in complex with ortho-dimethylbenzene linked cyclic peptide 3 (ortho-WRCDEETGEC). Descriptor: (2-methylphenyl)methanol, 1,2-ETHANEDIOL, CHLORIDE ION, ... Authors: Braun, M.B, Bischof, L, Hartmann, M.D. Deposit date: 2023-06-27 Release date: 2023-11-15 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Computational Prediction of Cyclic Peptide Structural Ensembles and Application to the Design of Keap1 Binders. J.Chem.Inf.Model., 63, 2023
8PV3	Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-11-15 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8PV7	Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-11-15 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.12 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8Q1B	III2-IV1 respiratory supercomplex from S. pombe Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE, CALCIUM ION, CARDIOLIPIN, ... Authors: Moe, A, Brzezinski, P. Deposit date: 2023-07-31 Release date: 2023-11-15 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structure and function of the S. pombe III-IV-cyt c supercomplex. Proc.Natl.Acad.Sci.USA, 120, 2023
8PKV	Kelch domain of KEAP1 in complex with a ortho-dimethylbenzene linked cyclic peptide 4 (ortho-WRCDEETGEC). Descriptor: (2-methylphenyl)methanol, 1,2-ETHANEDIOL, CHLORIDE ION, ... Authors: Braun, M.B, Bischof, L, Hartmann, M.D. Deposit date: 2023-06-27 Release date: 2023-11-15 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Computational Prediction of Cyclic Peptide Structural Ensembles and Application to the Design of Keap1 Binders. J.Chem.Inf.Model., 63, 2023
8PV1	Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-11-15 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.56 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8PV4	Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-11-15 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8PV5	Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-11-15 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.86 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8PVA	Structure of bacterial ribosome determined by cryoEM at 100 keV Descriptor: 16S rRNA, 23S rRNA, 50S ribosomal protein L14, ... Authors: McMullan, G, Naydenova, K, Mihaylov, D, Peet, M.J, Wilson, H, Yamashita, K, Dickerson, J.L, Chen, S, Cannone, G, Lee, Y, Hutchings, K.A, Gittins, O, Sobhy, M, Wells, T, El-Gomati, M.M, Dalby, J, Meffert, M, Schulze-Briese, C, Henderson, R, Russo, C.J. Deposit date: 2023-07-17 Release date: 2023-11-29 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structure determination by cryoEM at 100 keV. Proc.Natl.Acad.Sci.USA, 120, 2023
8PV6	Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-11-15 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.94 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8Q40	Crystal structure of cA4 activated Can2 in complex with a cleaved DNA substrate Descriptor: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*TP*CP*A)-3'), DUF1887 family protein, ... Authors: Jungfer, K, Sigg, A, Jinek, M. Deposit date: 2023-08-04 Release date: 2023-11-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
8Q41	Crystal structure of Can2 (E341A) bound to cA4 and TTTAAA ssDNA Descriptor: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*TP*TP*AP*AP*A)-3'), DUF1887 family protein, ... Authors: Jungfer, K, Sigg, A, Jinek, M. Deposit date: 2023-08-04 Release date: 2023-11-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
8Q42	Crystal structure of cA4-bound Can2 (E341A) in complex with oligo-A DNA Descriptor: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*AP*AP*AP*A)-3'), DUF1887 family protein, ... Authors: Jungfer, K, Sigg, A, Jinek, M. Deposit date: 2023-08-04 Release date: 2023-11-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
8PJ4	Structure of human 48S translation initiation complex after eIF5 release (48S-4) Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... Authors: Petrychenko, V, Yi, S.-H, Liedtke, D, Peng, B.Z, Rodnina, M.V, Fischer, N. Deposit date: 2023-06-22 Release date: 2024-08-14 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining Nat.Struct.Mol.Biol., 2024
8PWD	Crystal structure of VDR in complex Des-C-Ring and Aromatic-D-Ring analog 3c Descriptor: (1R,3S,5Z)-4-methylidene-5-[(E)-3-[3-[7,7,7-tris(fluoranyl)-6-oxidanyl-6-(trifluoromethyl)hept-3-ynyl]phenyl]pent-2-enylidene]cyclohexane-1,3-diol, Nuclear receptor coactivator 2, Vitamin D3 receptor A Authors: Rochel, N. Deposit date: 2023-07-20 Release date: 2024-08-14 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Novel Des-C-Ring and Aromatic-D-Ring analogs Acting as Potent Agonists of the Vitamin D Receptor (VDR) To Be Published
8Q4F	Structure of arbekacin bound Escherichia coli 70S ribosome Descriptor: 16S rRNA, 23S rRNA, 50S ribosomal protein L16, ... Authors: Majumdar, S, Parajuli, N.P, Ge, X, Emmerich, A, Sanyal, S. Deposit date: 2023-08-06 Release date: 2024-08-14 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structure of arbekacin bound Escherichia coli 70S ribosome To be published
5JBE	4,6-alpha-glucanotransferase GTFB from Lactobacillus reuteri 121 complexed with an isomalto-maltopentasaccharide Descriptor: ACETATE ION, CALCIUM ION, Inactive glucansucrase, ... Authors: Pijning, T, Dijkstra, B.W, Bai, Y, Gangoiti-Munecas, J, Dijkhuizen, L. Deposit date: 2016-04-13 Release date: 2017-01-18 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal Structure of 4,6-alpha-Glucanotransferase Supports Diet-Driven Evolution of GH70 Enzymes from alpha-Amylases in Oral Bacteria. Structure, 25, 2017
8Q26	HsNMT1 in complex with both MyrCoA and GNCFSKPR inhibitor peptide Descriptor: CHLORIDE ION, COENZYME A, Glycylpeptide N-tetradecanoyltransferase 1, ... Authors: Dian, C, Giglione, C, Meinnel, T. Deposit date: 2023-08-01 Release date: 2024-08-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: HsNMT1 in complex with both MyrCoA and GNCFSKPR inhibitor peptide to be published
8Q2N	Cas1-Cas2 CRISPR integrase bound to prespacer and target DNA, Streptococcus thermophilus DGCC 7710 CRISPR3 system Descriptor: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, Integration target, ... Authors: Sasnauskas, G, Gaizauskaite, U, Tamulaitiene, G. Deposit date: 2023-08-02 Release date: 2024-08-14 Method: ELECTRON MICROSCOPY (2.98 Å) Cite: Structural basis for spacer acquisition in a type II-A CRISPR-Cas system To be published
8Q3D	HsNMT1 in complex with both MyrCoA and GNCFSKPR(NH2) inhibitor peptide Descriptor: CHLORIDE ION, COENZYME A, GLYCEROL, ... Authors: Dian, C, Giglione, C, Meinnel, T. Deposit date: 2023-08-04 Release date: 2024-08-14 Method: X-RAY DIFFRACTION (2.15 Å) Cite: HsNMT1 in complex with both MyrCoA and GNCFSKPR(NH2) inhibitor peptide to be published
8Q05	Chlorella sorokiniana Rubisco with CsLinker (alpha3-alpha4) bound: D4 symmetry expanded Descriptor: CsLinker (alpha3-alpha4), Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small subunit, ... Authors: Barrett, J, Blaza, J.N, Mackinder, L.C.M. Deposit date: 2023-07-27 Release date: 2024-08-07 Method: ELECTRON MICROSCOPY (2.77 Å) Cite: A promiscuous mechanism to phase separate eukaryotic carbon fixation To Be Published
8Q1L	NMR structure of arthrofactin A in micellar DPC solution Descriptor: arthrofactin A Authors: Kovacs, B, Geudens, N, Martins, J.C. Deposit date: 2023-07-31 Release date: 2024-08-14 Method: SOLUTION NMR Cite: NMR structure of the cyclic lipodepsipeptide arthrofactin A in micellar DPC solution To be published
8Q3S	HsNMT1 in complex with both MyrCoA and GNCFSKAR inhibitor peptide Descriptor: CHLORIDE ION, COENZYME A, GLY-ASN-CYS-PHE-SER-LYS-ALA-ARG, ... Authors: Dian, C, Giglione, C, Meinnel, T. Deposit date: 2023-08-04 Release date: 2024-08-14 Method: X-RAY DIFFRACTION (1.78 Å) Cite: HsNMT1 in complex with both MyrCoA and GNCFSKAR inhibitor peptide to be published
8PK7	Helical reconstruction of CHIKV nsP3 helical scaffolds Descriptor: Non-structural protein 3, ZINC ION Authors: Reguera, J, Hons, M, Zimberger, C, Ptchelkine, D, Jones, R, Desfosses, A. Deposit date: 2023-06-25 Release date: 2024-08-14 Method: ELECTRON MICROSCOPY (2.52 Å) Cite: The alphavirus nsP3 protein forms helical tubular scaffolds important for viral replication and particle assembly To Be Published

<768769770771772773774775776777778779780781782783>