PDB: 46200 resultsInfo pagesStatus searchChemie searchBIRD

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3S2H	RNA Polymerase II Initiation Complex with a 6-nt RNA containing a 2[prime]-iodo ATP Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. Deposit date: 2011-05-16 Release date: 2011-08-17 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Initiation complex structure and promoter proofreading. Science, 333, 2011
3S1M	RNA Polymerase II Initiation Complex with a 5-nt RNA (variant 1) Descriptor: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*GP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. Deposit date: 2011-05-15 Release date: 2011-08-10 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.13 Å) Cite: Initiation complex structure and promoter proofreading. Science, 333, 2011
2XUR	The G157C mutation in the Escherichia coli sliding clamp specifically affects initiation of replication Descriptor: DNA POLYMERASE III SUBUNIT BETA Authors: Johnsen, L, Morigen, Dalhus, B, Bjoras, M, Flaatten, I, Waldminghaus, T, Skarstad, K. Deposit date: 2010-10-20 Release date: 2011-02-16 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The G157C Mutation in the Escherichia Coli Sliding Clamp Specifically Affects Initiation of Replication. Mol.Microbiol., 79, 2011
3MXA	Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus Descriptor: DNA (5'-D(*TP*CP*TP*GP*GP*CP*TP*GP*AP*GP*GP*TP*AP*C)-3'), DNA (5'-D(*TP*TP*GP*TP*TP*CP*TP*CP*AP*GP*GP*TP*AP*C)-3'), DNA (5'-D(P*CP*TP*CP*AP*GP*CP*CP*AP*GP*A)-3'), ... Authors: Munoz, I.G, Prieto, J, Subramanian, S, Coloma, J, Montoya, G. Deposit date: 2010-05-07 Release date: 2010-10-06 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus. Nucleic Acids Res., 39, 2011
3NO0	Aquifex aeolicus type IIA topoisomerase C-terminal domain Descriptor: DNA gyrase subunit A, GLYCEROL, NITRATE ION Authors: Tretter, E.M, Lerman, J.C, Berger, J.M. Deposit date: 2010-06-24 Release date: 2010-12-01 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.3004 Å) Cite: A naturally chimeric type IIA topoisomerase in Aquifex aeolicus highlights an evolutionary path for the emergence of functional paralogs. Proc.Natl.Acad.Sci.USA, 107, 2010
7D7C	CryoEM structure of gp55-dependent RNA polymerase-promoter open complex Descriptor: DNA (nontemplate strand), DNA (template strand), DNA-directed RNA polymerase subunit alpha, ... Authors: Shi, J, Wen, A, Jin, S, Feng, Y. Deposit date: 2020-10-03 Release date: 2021-01-20 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Transcription activation by a sliding clamp. Nat Commun, 12, 2021
7VDV	The overall structure of human chromatin remodeling PBAF-nucleosome complex Descriptor: ADENOSINE-5'-DIPHOSPHATE, AT-rich interactive domain-containing protein 2,AT-rich interactive domain-containing protein 2, Actin, ... Authors: Chen, Z.C, Chen, K.J, Yuan, J.J. Deposit date: 2021-09-07 Release date: 2022-05-18 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structure of human chromatin-remodelling PBAF complex bound to a nucleosome. Nature, 605, 2022
6EU3	Apo RNA Polymerase III - closed conformation (cPOL3) Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Abascal-Palacios, G, Ramsay, E.P, Beuron, F, Morris, E, Vannini, A. Deposit date: 2017-10-27 Release date: 2018-01-17 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural basis of RNA polymerase III transcription initiation. Nature, 553, 2018
6EU2	Apo RNA Polymerase III - open conformation (oPOL3) Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Abascal-Palacios, G, Ramsay, E.P, Beuron, F, Morris, E, Vannini, A. Deposit date: 2017-10-27 Release date: 2018-01-17 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural basis of RNA polymerase III transcription initiation. Nature, 553, 2018
8ABY	RNA polymerase bound to purified in vitro transcribed regulatory RNA putL - pause prone, closed clamp state Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Dey, S, Weixlbaumer, A. Deposit date: 2022-07-05 Release date: 2022-10-19 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural insights into RNA-mediated transcription regulation in bacteria. Mol.Cell, 82, 2022
8AC0	RNA polymerase at U-rich pause bound to regulatory RNA putL - active, closed clamp state Descriptor: DNA Non-template strand, DNA Template strand, DNA-directed RNA polymerase subunit alpha, ... Authors: Weixlbaumer, A, Dey, S. Deposit date: 2022-07-05 Release date: 2022-10-19 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural insights into RNA-mediated transcription regulation in bacteria. Mol.Cell, 82, 2022
8ACP	RNA polymerase at U-rich pause bound to regulatory RNA putL - inactive, open clamp state Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Dey, S, Weixlbaumer, A. Deposit date: 2022-07-06 Release date: 2022-10-19 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structural insights into RNA-mediated transcription regulation in bacteria. Mol.Cell, 82, 2022
8ABZ	RNA polymerase at U-rich pause bound to non-regulatory RNA - pause prone, closed clamp state Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Dey, S, Weixlbaumer, A. Deposit date: 2022-07-05 Release date: 2022-10-19 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural insights into RNA-mediated transcription regulation in bacteria. Mol.Cell, 82, 2022
8AC2	RNA polymerase- post-terminated, open clamp state Descriptor: DNA Non-template strand, DNA Template strand, DNA-directed RNA polymerase subunit alpha, ... Authors: Dey, S, Weixlbaumer, A. Deposit date: 2022-07-05 Release date: 2022-10-19 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural insights into RNA-mediated transcription regulation in bacteria. Mol.Cell, 82, 2022
8AC1	RNA polymerase at U-rich pause bound to non-regulatory RNA - inactive, open clamp state Descriptor: DNA Non-template strand, DNA Template strand, DNA-directed RNA polymerase subunit alpha, ... Authors: Dey, S, Weixlbaumer, A. Deposit date: 2022-07-05 Release date: 2022-10-26 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (4.06 Å) Cite: Structural insights into RNA-mediated transcription regulation in bacteria. Mol.Cell, 82, 2022
5OF3	Crystal structure of the heterotrimeric PriSLX primase from S. solfataricus. Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA primase large subunit PriL, DNA primase small subunit PriS, ... Authors: Pellegrini, L, Holzer, S. Deposit date: 2017-07-10 Release date: 2017-11-29 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.906 Å) Cite: Primer synthesis by a eukaryotic-like archaeal primase is independent of its Fe-S cluster. Nat Commun, 8, 2017
3RB3	Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 1-methylguanine (m1g) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-28 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
3RBD	Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-29 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.502 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
6T90	OCT4-SOX2-bound nucleosome - SHL-6 Descriptor: DNA (146-MER), Green fluorescent protein,POU domain, class 5, ... Authors: Michael, A.K, Kempf, G, Cavadini, S, Bunker, R.D, Thoma, N.H. Deposit date: 2019-10-25 Release date: 2020-05-06 Last modified: 2020-07-08 Method: ELECTRON MICROSCOPY (3.05 Å) Cite: Mechanisms of OCT4-SOX2 motif readout on nucleosomes. Science, 368, 2020
6FLP	CryoEM structure of E.coli RNA polymerase paused elongation complex without RNA hairpin bound to NusA Descriptor: DNA (30-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Guo, X, Weixlbaumer, A. Deposit date: 2018-01-26 Release date: 2018-03-07 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural Basis for NusA Stabilized Transcriptional Pausing. Mol. Cell, 69, 2018
3RB0	Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 1-methylguanine (M1G) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*C*CP*TP*AP*AP*CP*(MG1)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'), ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-28 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.225 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
3RB6	Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-28 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
3RBE	Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'), ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-29 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
3RB4	Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'), ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-28 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.805 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
3RAX	Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*CP*TP*AP*AP*CP*(MG1)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'), ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-28 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.891 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011

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