PDB: 142 resultsInfo pagesStatus searchChemie searchBIRD

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5HPA	The crystal of rhodanese domain of YgaP treated with sodium thiosulfate Descriptor: Inner membrane protein YgaP Authors: Eichmann, C, Tzitzilonis, C, Kwiatkowski, W, Riek, R. Deposit date: 2016-01-20 Release date: 2017-02-01 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.66 Å) Cite: S-Sulfhydration of the Catalytic Cysteine in the Rhodanese Domain of YgaP is a Complex Dynamical Process. To Be Published
5VE5	Crystal structure of persulfide dioxygenase rhodanese fusion protein with rhodanese domain inactivating mutation (C314S) from Burkholderia phytofirmans in complex with glutathione Descriptor: BpPRF, CHLORIDE ION, FE (III) ION, ... Authors: Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R. Deposit date: 2017-04-03 Release date: 2017-07-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation. J. Biol. Chem., 292, 2017
5VE4	Crystal structure of persulfide dioxygenase-rhodanese fusion protein with rhodanese domain inactivating mutation (C314S) from Burkholderia phytofirmans Descriptor: BpPRF, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R. Deposit date: 2017-04-03 Release date: 2017-07-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation. J. Biol. Chem., 292, 2017
5VE3	Crystal structure of wild-type persulfide dioxygenase-rhodanese fusion protein from Burkholderia phytofirmans Descriptor: BpPRF, FE (III) ION Authors: Motl, N, Skiba, M.A, Smith, J.L, Banerjee, R. Deposit date: 2017-04-03 Release date: 2017-07-19 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.793 Å) Cite: Structural and biochemical analyses indicate that a bacterial persulfide dioxygenase-rhodanese fusion protein functions in sulfur assimilation. J. Biol. Chem., 292, 2017
5WQJ	Crystal structure of 3-Mercaptopyruvate Sulfurtransferase(3MST) in complex with compound1 Descriptor: 2-[2-[(4-oxidanylidene-3~{H}-quinazolin-2-yl)sulfanyl]ethanoylamino]thiophene-3-carboxamide, SODIUM ION, Sulfurtransferase Authors: Suwanai, Y, Toma-Fukai, S, Shimizu, T. Deposit date: 2016-11-27 Release date: 2017-09-06 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Discovery and Mechanistic Characterization of Selective Inhibitors of H2S-producing Enzyme: 3-Mercaptopyruvate Sulfurtransferase (3MST) Targeting Active-site Cysteine Persulfide Sci Rep, 7, 2017
5WQK	Crystal structure of 3-Mercaptopyruvate Sulfurtransferase(3MST) in complex with compound1 Descriptor: 4-methyl-2-(2-naphthalen-1-yl-2-oxidanylidene-ethyl)sulfanyl-1~{H}-pyrimidin-6-one, SODIUM ION, Sulfurtransferase Authors: Suwanai, Y, Toma-Fukai, S, Shimizu, T. Deposit date: 2016-11-27 Release date: 2017-09-06 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Discovery and Mechanistic Characterization of Selective Inhibitors of H2S-producing Enzyme: 3-Mercaptopyruvate Sulfurtransferase (3MST) Targeting Active-site Cysteine Persulfide Sci Rep, 7, 2017
6BEV	Human Single Domain Sulfurtranferase TSTD1 Descriptor: Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1 Authors: Motl, N, Akey, D.L, Smith, J.L, Banerjee, R. Deposit date: 2017-10-25 Release date: 2018-01-24 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.043 Å) Cite: Thiosulfate sulfurtransferase-like domain-containing 1 protein interacts with thioredoxin. J. Biol. Chem., 293, 2018
6HIZ	Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the head of the small mitoribosomal subunit Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (143-MER), ... Authors: Ramrath, D.J.F, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boehringer, A, Schneider, A, Ban, N. Deposit date: 2018-08-31 Release date: 2018-09-26 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.08 Å) Cite: Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes. Science, 362, 2018
6HIW	Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete small mitoribosomal subunit in complex with mt-IF-3 Descriptor: 9S rRNA, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Ramrath, D, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boehringer, D, Schneider, A, Ban, N. Deposit date: 2018-08-31 Release date: 2018-09-26 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.37 Å) Cite: Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes. Science, 362, 2018
6HIV	Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete mitoribosome Descriptor: 12S rRNA, 50S ribosomal protein L13, putative, ... Authors: Ramrath, D.J.F, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boerhringer, D, Schneider, A, Ban, N. Deposit date: 2018-08-31 Release date: 2018-10-03 Last modified: 2018-11-07 Method: ELECTRON MICROSCOPY (7.8 Å) Cite: Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes. Science, 362, 2018
6MXV	The crystal structure of a rhodanese-like family protein from Francisella tularensis subsp. tularensis SCHU S4 Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, DODECAETHYLENE GLYCOL, ... Authors: Tan, K, Skarina, T, Di Leo, R, Savchenko, A, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2018-10-31 Release date: 2018-11-21 Last modified: 2019-12-18 Method: X-RAY DIFFRACTION (1.78 Å) Cite: The crystal structure of a rhodanese-like family protein from Francisella tularensis subsp. tularensis SCHU S4 To Be Published
6H99	Crystal structure of anaerobic ergothioneine biosynthesis enzyme from Chlorobium limicola in persulfide form. Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Leisinger, F, Burn, R, Meury, M, Lukat, P, Seebeck, F.P. Deposit date: 2018-08-03 Release date: 2019-06-12 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural and Mechanistic Basis for Anaerobic Ergothioneine Biosynthesis. J.Am.Chem.Soc., 141, 2019
6H98	Native crystal structure of anaerobic ergothioneine biosynthesis enzyme from Chlorobium limicola. Descriptor: CHLORIDE ION, ETHANOL, FORMIC ACID, ... Authors: Leisinger, F, Burn, R, Meury, M, Lukat, P, Seebeck, F.P. Deposit date: 2018-08-03 Release date: 2019-06-12 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural and Mechanistic Basis for Anaerobic Ergothioneine Biosynthesis. J.Am.Chem.Soc., 141, 2019
6H9A	Crystal structure of anaerobic ergothioneine biosynthesis enzyme from Chlorobium limicola in complex with natural substrate trimethyl histidine. Descriptor: CHLORIDE ION, N,N,N-trimethyl-histidine, SODIUM ION, ... Authors: Leisinger, F, Burn, R, Meury, M, Lukat, P, Seebeck, F.P. Deposit date: 2018-08-03 Release date: 2019-06-12 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2.831 Å) Cite: Structural and Mechanistic Basis for Anaerobic Ergothioneine Biosynthesis. J.Am.Chem.Soc., 141, 2019
6SG9	Head domain of the mt-SSU assemblosome from Trypanosoma brucei Descriptor: 9S rRNA, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Saurer, M, Ramrath, D.J.F, Niemann, M, Calderaro, S, Prange, C, Mattei, S, Scaiola, A, Leitner, A, Bieri, P, Horn, E.K, Leibundgut, M, Boehringer, D, Schneider, A, Ban, N. Deposit date: 2019-08-03 Release date: 2019-09-18 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery. Science, 365, 2019
6SGB	mt-SSU assemblosome of Trypanosoma brucei Descriptor: 9S rRNA, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Saurer, M, Ramrath, D.J.F, Niemann, M, Calderaro, S, Prange, C, Mattei, S, Scaiola, A, Leitner, A, Bieri, P, Horn, E.K, Leibundgut, M, Boehringer, D, Schneider, A, Ban, N. Deposit date: 2019-08-03 Release date: 2019-09-25 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery. Science, 365, 2019
6K6R	Crystal structure of Saccharomyces cerevisiae single domain sulfurtranferase RDL2 Descriptor: Thiosulfate sulfurtransferase RDL2, mitochondrial Authors: Li, H.J, Wang, Q.D. Deposit date: 2019-06-04 Release date: 2019-11-06 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.471 Å) Cite: Saccharomyces cerevisiaeRhodanese RDL2 Uses the ArgResidue of the Active-Site Loop for Thiosulfate Decomposition Antioxidants, 10, 2021
6JL7	crystal structure of TBC1D23 N terminal domain Descriptor: TBC1 domain family member 23 Authors: Sun, Q, Hu, W, Jia, D. Deposit date: 2019-03-04 Release date: 2020-03-04 Last modified: 2021-09-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure of TBC1D23 N-terminus reveals a novel role for rhodanese domain. Plos Biol., 18, 2020
6PFZ	Structure of a NAD-Dependent Persulfide Reductase from A. fulgidus Descriptor: CALCIUM ION, COENZYME A, FLAVIN-ADENINE DINUCLEOTIDE, ... Authors: Sazinsky, M.H, Shabdar, S, Garcia-Constineiras, A, Crane III, E.J. Deposit date: 2019-06-23 Release date: 2020-07-01 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.10003877 Å) Cite: Structural and Kinetic Characterization of Hyperthermophilic NADH-Dependent Persulfide Reductase from Archaeoglobus fulgidus . Archaea, 2021, 2021
6YUB	Crystal structure of Uba4 from Chaetomium thermophilum Descriptor: Adenylyltransferase and sulfurtransferase uba4, ZINC ION Authors: Grudnik, P, Pabis, M, Ethiraju Ravichandran, K, Glatt, S. Deposit date: 2020-04-26 Release date: 2020-07-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.195 Å) Cite: Molecular basis for the bifunctional Uba4-Urm1 sulfur-relay system in tRNA thiolation and ubiquitin-like conjugation. Embo J., 39, 2020
6YJ5	Focused refinement cryo-EM structure of the yeast mitochondrial complex I sub-stoichiometric sulfur transferase subunit Descriptor: Rhodanese-like domain-containing protein Authors: Hirst, J, Grba, D. Deposit date: 2020-04-02 Release date: 2020-08-12 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Intrinsic curvature of the HIV-1 CA hexamer underlies capsid topology and interaction with cyclophilin A. Nat.Struct.Mol.Biol., 27, 2020
6KTX	The wildtype structure of EanB Descriptor: 1,2-ETHANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, CHLORIDE ION, ... Authors: Wu, L, Liu, P.H, Zhou, J.H. Deposit date: 2019-08-29 Release date: 2020-08-26 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.189 Å) Cite: Single-Step Replacement of an Unreactive C-H Bond by a C-S Bond Using Polysulfide as the Direct Sulfur Source in the Anaerobic Ergothioneine Biosynthesis Acs Catalysis, 10, 2020
6KU1	The structure of EanB/Y353A complex with ergothioneine Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ... Authors: Wu, L, Liu, P.H, Zhou, J.H. Deposit date: 2019-08-30 Release date: 2020-08-26 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Single-Step Replacement of an Unreactive C-H Bond by a C-S Bond Using Polysulfide as the Direct Sulfur Source in the Anaerobic Ergothioneine Biosynthesis Acs Catalysis, 10, 2020
6KTW	structure of EanB with hercynine Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ... Authors: Wu, L, Liu, P.H, Zhou, J.H. Deposit date: 2019-08-29 Release date: 2020-08-26 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.931 Å) Cite: Single-Step Replacement of an Unreactive C-H Bond by a C-S Bond Using Polysulfide as the Direct Sulfur Source in the Anaerobic Ergothioneine Biosynthesis Acs Catalysis, 10, 2020
6KU2	The structure of EanB/Y353A complex with ergothioneine covalent linked with persulfide Cys412 Descriptor: 1,2-ETHANEDIOL, BROMIDE ION, CHLORIDE ION, ... Authors: Wu, L, Liu, P.H, Zhou, J.H. Deposit date: 2019-08-30 Release date: 2020-08-26 Method: X-RAY DIFFRACTION (2.34 Å) Cite: Single-Step Replacement of an Unreactive C-H Bond by a C-S Bond Using Polysulfide as the Direct Sulfur Source in the Anaerobic Ergothioneine Biosynthesis Acs Catalysis, 10, 2020

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