Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8DLF
DownloadVisualize
BU of 8dlf by Molmil
EBNA1 DNA binding domain (DBD) (458-617)+2 repeats of family repeat (FR) region
Descriptor: 2XFR DNA (56-MER), Epstein-Barr nuclear antigen 1
Authors:Mei, Y, Lieberman, P.M, Murakami, K.
Deposit date:2022-07-07
Release date:2023-05-17
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Cryo-EM Structure and Functional Studies of EBNA1 Binding to the Family of Repeats and Dyad Symmetry Elements of Epstein-Barr Virus oriP.
J.Virol., 96, 2022
4NE3
DownloadVisualize
BU of 4ne3 by Molmil
Human MHF1-MHF2 complex
Descriptor: Centromere protein S, Centromere protein X
Authors:Zhao, Q, Saro, D, Sachpatzidis, A, Sung, P, Xiong, Y.
Deposit date:2013-10-28
Release date:2013-12-25
Last modified:2014-02-12
Method:X-RAY DIFFRACTION (1.8007 Å)
Cite:The MHF complex senses branched DNA by binding a pair of crossover DNA duplexes.
Nat Commun, 5, 2014
5VPC
DownloadVisualize
BU of 5vpc by Molmil
Transcription factor FosB/JunD bZIP domain in its oxidized form, type-II crystal
Descriptor: CHLORIDE ION, Protein fosB, SODIUM ION, ...
Authors:Yin, Z, Machius, M.C, Rudenko, G.
Deposit date:2017-05-04
Release date:2017-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.498 Å)
Cite:Activator Protein-1: redox switch controlling structure and DNA-binding.
Nucleic Acids Res., 45, 2017
5VPB
DownloadVisualize
BU of 5vpb by Molmil
Transcription factor FosB/JunD bZIP domain in its oxidized form, type-I crystal
Descriptor: CHLORIDE ION, Protein fosB, Transcription factor jun-D
Authors:Yin, Z, Machius, M, Rudenko, G.
Deposit date:2017-05-04
Release date:2017-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.691 Å)
Cite:Activator Protein-1: redox switch controlling structure and DNA-binding.
Nucleic Acids Res., 45, 2017
5VPD
DownloadVisualize
BU of 5vpd by Molmil
Transcription factor FosB/JunD bZIP domain in its oxidized form, type-III crystal
Descriptor: CHLORIDE ION, Protein fosB, SODIUM ION, ...
Authors:Yin, Z, Machius, M, Rudenko, G.
Deposit date:2017-05-04
Release date:2017-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Activator Protein-1: redox switch controlling structure and DNA-binding.
Nucleic Acids Res., 45, 2017
4NE6
DownloadVisualize
BU of 4ne6 by Molmil
Human MHF1-MHF2 complex
Descriptor: Centromere protein S, Centromere protein X
Authors:Zhao, Q, Saro, D, Sachpatzidis, A, Sung, P, Xiong, Y.
Deposit date:2013-10-28
Release date:2013-12-25
Last modified:2014-02-12
Method:X-RAY DIFFRACTION (2.1001 Å)
Cite:The MHF complex senses branched DNA by binding a pair of crossover DNA duplexes.
Nat Commun, 5, 2014
5VPA
DownloadVisualize
BU of 5vpa by Molmil
Transcription factor FosB/JunD bZIP domain
Descriptor: CHLORIDE ION, Protein fosB, SODIUM ION, ...
Authors:Yin, Z, Machius, M, Rudenko, G.
Deposit date:2017-05-04
Release date:2017-09-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Activator Protein-1: redox switch controlling structure and DNA-binding.
Nucleic Acids Res., 45, 2017
1LWM
DownloadVisualize
BU of 1lwm by Molmil
Solution Structure of the Sequence-Non-Specific HMGB protein NHP6A
Descriptor: NONHISTONE CHROMOSOMAL PROTEIN 6A
Authors:Masse, J.E, Wong, B, Yen, Y.-M, Allain, F.H.-T, Johnson, R.C, Feigon, J.
Deposit date:2002-05-31
Release date:2002-10-16
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding
J.Mol.Biol., 323, 2002
4NE5
DownloadVisualize
BU of 4ne5 by Molmil
Human MHF1-MHF2 complex
Descriptor: Centromere protein S, Centromere protein X
Authors:Zhao, Q, Saro, D, Sachpatzidis, A, Sung, P, Xiong, Y.
Deposit date:2013-10-28
Release date:2013-12-25
Last modified:2014-02-12
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The MHF complex senses branched DNA by binding a pair of crossover DNA duplexes.
Nat Commun, 5, 2014
2D9A
DownloadVisualize
BU of 2d9a by Molmil
Solution Structure of RSGI RUH-050, a myb DNA-binding domain in mouse cDNA
Descriptor: Myb-related protein B
Authors:Doi-Katayama, Y, Hirota, H, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-09
Release date:2006-06-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of RSGI RUH-050, a myb DNA-binding domain in mouse cDNA
To be Published
8X7U
DownloadVisualize
BU of 8x7u by Molmil
MCM in complex with dsDNA in presence of ATP.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, mini-chromosome maintenance complex 3
Authors:Ma, J, Yi, G, Ye, M, MacGregor-Chatwin, C, Sheng, Y, Lu, Y, Li, M, Gilbert, R.J.C, Zhang, P.
Deposit date:2023-11-25
Release date:2024-01-17
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:MCM in complex with dsDNA in presence of ATP
To Be Published
5DWC
DownloadVisualize
BU of 5dwc by Molmil
Crystal structure of restriction endonuclease AgeI
Descriptor: Type-2 restriction enzyme AgeI
Authors:Tamulaitiene, G, Ramonaite, I, Grazulis, S, Siksnys, V.
Deposit date:2015-09-22
Release date:2016-09-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA.
Nucleic Acids Res., 45, 2017
5LOI
DownloadVisualize
BU of 5loi by Molmil
Crystal structure of Myceliophthora thermophila Rad26 (residues 373-841)
Descriptor: Rad26
Authors:Andersen, K.R.
Deposit date:2016-08-09
Release date:2017-03-29
Last modified:2017-05-31
Method:X-RAY DIFFRACTION (3.153 Å)
Cite:Insights into Rad3 kinase recruitment from the crystal structure of the DNA damage checkpoint protein Rad26.
J. Biol. Chem., 292, 2017
7B4F
DownloadVisualize
BU of 7b4f by Molmil
Structural basis of reactivation of oncogenic p53 mutants by a small molecule: methylene quinuclidinone (MQ). Human p53DBD-R282W mutant bound to DNA: R282W-MQ (I)
Descriptor: Cellular tumor antigen p53, DNA target, FORMIC ACID, ...
Authors:Rozenberg, H, Degtjarik, O, Shakked, Z.
Deposit date:2020-12-02
Release date:2021-12-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural basis of reactivation of oncogenic p53 mutants by a small molecule: methylene quinuclidinone (MQ).
Nat Commun, 12, 2021
5FQ5
DownloadVisualize
BU of 5fq5 by Molmil
Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing
Descriptor: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1, MAGNESIUM ION, NON-TARGET DNA STRAND, ...
Authors:Olieric, V, Weinert, T, Finke, A, Anders, C, Jinek, M, Wang, M.
Deposit date:2015-12-07
Release date:2016-03-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.136 Å)
Cite:Data-Collection Strategy for Challenging Native Sad Phasing.
Acta Crystallogr.,Sect.D, 72, 2016
3IAG
DownloadVisualize
BU of 3iag by Molmil
CSL (RBP-Jk) bound to HES-1 nonconsensus site
Descriptor: 1,2-ETHANEDIOL, 5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*AP*CP*AP*CP*GP*AP*T)-3', 5'-D(*TP*TP*AP*TP*CP*GP*TP*GP*TP*GP*AP*AP*AP*GP*A)-3', ...
Authors:Friedmann, D.R, Kovall, R.A.
Deposit date:2009-07-13
Release date:2009-11-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Thermodynamic and structural insights into CSL-DNA complexes.
Protein Sci., 19, 2010
8OO9
DownloadVisualize
BU of 8oo9 by Molmil
CryoEM Structure INO80core Hexasome complex ATPase-DNA refinement state1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Chromatin-remodeling ATPase INO80, DNA strand 1, ...
Authors:Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S.
Deposit date:2023-04-04
Release date:2023-07-26
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling.
Science, 381, 2023
5XAY
DownloadVisualize
BU of 5xay by Molmil
Crystal structure of full length tylp, a tetr regulator from streptomyces fradiae
Descriptor: Gamma-butyrolactone receptor protein
Authors:Ray, S, Panjikar, S, Anand, R.
Deposit date:2017-03-15
Release date:2017-08-02
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Functional insights into the mode of DNA and ligand binding of the TetR family regulator TylP from Streptomyces fradiae
J. Biol. Chem., 292, 2017
3M89
DownloadVisualize
BU of 3m89 by Molmil
Structure of TubZ-GTP-g-S
Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, FtsZ/tubulin-related protein
Authors:Ni, L, Xu, W, Schumacher, M.A.
Deposit date:2010-03-17
Release date:2010-07-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:From the Cover: Plasmid protein TubR uses a distinct mode of HTH-DNA binding and recruits the prokaryotic tubulin homolog TubZ to effect DNA partition.
Proc.Natl.Acad.Sci.USA, 107, 2010
6DA1
DownloadVisualize
BU of 6da1 by Molmil
ETS1 in complex with synthetic SRR mimic
Descriptor: Protein C-ets-1, SULFATE ION, serine-rich region (SRR) peptide
Authors:Perez-Borrajero, C, Okon, M, Lin, C.S, Scheu, K, Murphy, M.E.P, Graves, B.J, McIntosh, L.P.
Deposit date:2018-05-01
Release date:2019-01-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.000127 Å)
Cite:The Biophysical Basis for Phosphorylation-Enhanced DNA-Binding Autoinhibition of the ETS1 Transcription Factor.
J. Mol. Biol., 431, 2019
6DAT
DownloadVisualize
BU of 6dat by Molmil
ETS1 in complex with synthetic SRR mimic
Descriptor: Protein C-ets-1, SULFATE ION, serine-rich region (SRR) peptide
Authors:Perez-Borrajero, C, Okon, M, Lin, C.S, Scheu, K, Murphy, M.E.P, Graves, B.J, McIntosh, L.P.
Deposit date:2018-05-02
Release date:2019-01-16
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.35002637 Å)
Cite:The Biophysical Basis for Phosphorylation-Enhanced DNA-Binding Autoinhibition of the ETS1 Transcription Factor.
J. Mol. Biol., 431, 2019
5XAZ
DownloadVisualize
BU of 5xaz by Molmil
Crystal structure of full length native tylp, a tetr regulator from streptomyces fradiae
Descriptor: Gamma-butyrolactone receptor protein
Authors:Ray, S, Panjikar, S, Anand, R.
Deposit date:2017-03-15
Release date:2017-08-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Functional insights into the mode of DNA and ligand binding of the TetR family regulator TylP from Streptomyces fradiae
J. Biol. Chem., 292, 2017
2CKX
DownloadVisualize
BU of 2ckx by Molmil
Crystal structure of NgTRF1, double-stranded telomeric repeat binding factor from Nicotiana tabacum.
Descriptor: TELOMERE BINDING PROTEIN TBP1
Authors:Byun, J.-S, Cho, H.-S.
Deposit date:2006-04-24
Release date:2007-05-29
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the DNA-Binding Domain of Ngtrf1 Reveals Unique Features of Plant Telomere-Binding Proteins.
Nucleic Acids Res., 36, 2008
7NMB
DownloadVisualize
BU of 7nmb by Molmil
cytoplasmic domain of Vibrio cholerae ToxR
Descriptor: Cholera toxin transcriptional activator
Authors:Gubensaek, N, Zangger, K, Hartlmueller, C, Madl, T.
Deposit date:2021-02-23
Release date:2021-10-20
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structural and DNA-binding properties of the cytoplasmic domain of Vibrio cholerae transcription factor ToxR.
J.Biol.Chem., 297, 2021
5IHE
DownloadVisualize
BU of 5ihe by Molmil
D-family DNA polymerase - DP1 subunit (3'-5' proof-reading exonuclease)
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, ACETATE ION, ...
Authors:Sauguet, L, Raia, P, De Larue, M.
Deposit date:2016-02-29
Release date:2016-08-31
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Shared active site architecture between archaeal PolD and multi-subunit RNA polymerases revealed by X-ray crystallography.
Nat Commun, 7, 2016

224572

건을2024-09-04부터공개중

PDB statisticsPDBj update infoContact PDBjnumon