PDB: 17012 resultsInfo pagesStatus searchChemie searchBIRD

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8DP6	Crystal structure of Helicobacter pylori EgtU Descriptor: Osmoprotection protein, SULFATE ION Authors: Duncan-Lowey, B, Zhou, W, Kranzusch, P.J. Deposit date: 2022-07-15 Release date: 2022-11-09 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.3 Å) Cite: A microbial transporter of the dietary antioxidant ergothioneine. Cell, 185, 2022
8DP7	Structure of Helicobacter pylori EgtU bound to EGT Descriptor: Osmoprotection protein, trimethyl-[(2S)-1-oxidanyl-1-oxidanylidene-3-(2-sulfanylidene-1,3-dihydroimidazol-4-yl)propan-2-yl]azanium Authors: Duncan-Lowey, B, Zhou, W, Kranzusch, P.J. Deposit date: 2022-07-15 Release date: 2022-11-09 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3.35 Å) Cite: A microbial transporter of the dietary antioxidant ergothioneine. Cell, 185, 2022
6JYS	GII.13/21 noroviruses recognize glycans with a terminal beta-galactose via an unconventional glycan binding site Descriptor: THREONINE, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose, beta-D-galactopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)]2-acetamido-2-deoxy-alpha-D-galactopyranose, ... Authors: Duan, Z, Xin, C. Deposit date: 2019-04-27 Release date: 2019-05-22 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.697 Å) Cite: GII.13/21 Noroviruses Recognize Glycans with a Terminal beta-Galactose via an Unconventional Glycan Binding Site. J.Virol., 93, 2019
6MRM	Red Clover Necrotic Mosaic Virus Descriptor: CALCIUM ION, Capsid protein Authors: Sherman, M.B, Smith, T.J. Deposit date: 2018-10-14 Release date: 2019-10-16 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Near-Atomic-Resolution Cryo-Electron Microscopy Structures of Cucumber Leaf Spot Virus and Red Clover Necrotic Mosaic Virus: Evolutionary Divergence at the Icosahedral Three-Fold Axes. J.Virol., 94, 2020
4R2P	Wilms Tumor Protein (WT1) zinc fingers in complex with hydroxymethylated DNA Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*(5HC)P*GP*T)-3'), DNA (5'-D(*TP*AP*(5HC)P*GP*CP*CP*CP*AP*CP*GP*C)-3'), ... Authors: Hashimoto, H, Olanrewaju, Y.O, Zheng, Y, Wilson, G.G, Zhang, X, Cheng, X. Deposit date: 2014-08-12 Release date: 2014-10-08 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.788 Å) Cite: Wilms tumor protein recognizes 5-carboxylcytosine within a specific DNA sequence. Genes Dev., 28, 2014
8ANH	Structure of the amyloid-forming peptide LYIQWL from Tc5b, grown from 30% acetonitrile Descriptor: ACETONITRILE, Peptide LYIQWL from Tc5b, trifluoroacetic acid Authors: Durvanger, Z. Deposit date: 2022-08-05 Release date: 2023-08-02 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Polymorphic amyloid nanostructures of hormone peptides involved in glucose homeostasis display reversible amyloid formation. Nat Commun, 14, 2023
6JYO	GII.13/21 noroviruses recognize glycans with a terminal beta-galactose via an unconventional glycan binding site Descriptor: norovirus P domain protein Authors: Duan, Z, Xin, C. Deposit date: 2019-04-27 Release date: 2019-05-22 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.502 Å) Cite: GII.13/21 Noroviruses Recognize Glycans with a Terminal beta-Galactose via an Unconventional Glycan Binding Site. J.Virol., 93, 2019
8ANN	Structure of the amyloid-forming peptide LFIEWL from exendin-4, grown from acetonitrile / water Descriptor: Peptide LFIEWL from exendin-4 Authors: Durvanger, Z. Deposit date: 2022-08-05 Release date: 2023-08-02 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.24 Å) Cite: Polymorphic amyloid nanostructures of hormone peptides involved in glucose homeostasis display reversible amyloid formation. Nat Commun, 14, 2023
8ANL	Structure of the amyloid-forming peptide LFIEWL from exendin-4, grown from water Descriptor: Peptide LFIEWL from exendin-4 Authors: Durvanger, Z. Deposit date: 2022-08-05 Release date: 2023-08-02 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Polymorphic amyloid nanostructures of hormone peptides involved in glucose homeostasis display reversible amyloid formation. Nat Commun, 14, 2023
8ANM	Structure of the amyloid-forming peptide LYIQWL from Tc5b, grown from water Descriptor: Peptide LYIQWL from Tc5b Authors: Durvanger, Z. Deposit date: 2022-08-05 Release date: 2023-08-02 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (0.9 Å) Cite: Polymorphic amyloid nanostructures of hormone peptides involved in glucose homeostasis display reversible amyloid formation. Nat Commun, 14, 2023
8ANI	Structure of the amyloid-forming peptide LYIQWL from Tc5b, grown from 10% ethanol Descriptor: ETHANOL, Peptide LYIQWL from Tc5b, trifluoroacetic acid Authors: Durvanger, Z. Deposit date: 2022-08-05 Release date: 2023-08-02 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Polymorphic amyloid nanostructures of hormone peptides involved in glucose homeostasis display reversible amyloid formation. Nat Commun, 14, 2023
1GAQ	CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN FERREDOXIN AND FERREDOXIN-NADP+ REDUCTASE Descriptor: FE2/S2 (INORGANIC) CLUSTER, FERREDOXIN I, FERREDOXIN-NADP+ REDUCTASE, ... Authors: Kurisu, G, Kusunoki, M, Hase, T. Deposit date: 2000-05-08 Release date: 2001-02-07 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.59 Å) Cite: Structure of the electron transfer complex between ferredoxin and ferredoxin-NADP(+) reductase. Nat.Struct.Biol., 8, 2001
8ANG	Structure of the amyloid-forming peptide LYIQWL from Tc5b, grown from 30% ethanol Descriptor: ETHANOL, Peptide LYIQWL from Tc5b Authors: Durvanger, Z. Deposit date: 2022-08-05 Release date: 2023-08-02 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Polymorphic amyloid nanostructures of hormone peptides involved in glucose homeostasis display reversible amyloid formation. Nat Commun, 14, 2023
8ANJ	Structure of the amyloid-forming peptide DFINWL from human GLP-2 Descriptor: Peptide DFINWL from human GLP-2 Authors: Durvanger, Z. Deposit date: 2022-08-05 Release date: 2023-08-02 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Polymorphic amyloid nanostructures of hormone peptides involved in glucose homeostasis display reversible amyloid formation. Nat Commun, 14, 2023
8ANK	Structure of the amyloid-forming peptide pEFIAWL from human GLP-1 Descriptor: Peptide pEFIAWL from hGLP-1 Authors: Durvanger, Z. Deposit date: 2022-08-05 Release date: 2023-08-02 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Polymorphic amyloid nanostructures of hormone peptides involved in glucose homeostasis display reversible amyloid formation. Nat Commun, 14, 2023
8ATG	Pentameric ligand-gated ion channel GLIC with bound lipids Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, Proton-gated ion channel Authors: Bergh, C, Rovsnik, U, Howard, R.J, Lindahl, E. Deposit date: 2022-08-23 Release date: 2023-09-06 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Discovery of lipid binding sites in a ligand-gated ion channel by integrating simulations and cryo-EM. Elife, 12, 2024
6JXD	Human nucleosome core particle with cohesive end DNA termini Descriptor: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: DeFalco, L, Davey, C.A. Deposit date: 2019-04-23 Release date: 2020-01-15 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.25 Å) Cite: PARP1 exhibits enhanced association and catalytic efficiency with gamma H2A.X-nucleosome. Nat Commun, 10, 2019
6K73	Chaperone-tip adhesin complex is vital for synergistic activation of CFA/I fimbriae biogenesis Descriptor: CFA/I fimbrial subunit E, Colonization factor antigen I chaperone CfaA, GLYCEROL, ... Authors: Bao, R, He, L.H. Deposit date: 2019-06-05 Release date: 2020-06-10 Last modified: 2020-10-14 Method: X-RAY DIFFRACTION (2.7742 Å) Cite: Chaperone-tip adhesin complex is vital for synergistic activation of CFA/I fimbriae biogenesis. Plos Pathog., 16, 2020
8DO5	Crystal structure of NahE in complex with intermediate (R)-4-hydroxy-4-(2-hydroxyphenyl)-2-iminobutanoate Descriptor: (4R)-4-hydroxy-4-(2-hydroxyphenyl)butanoic acid, DIMETHYL SULFOXIDE, Trans-ohydrobenzylidenepyruvate hydratase aldolase Authors: LeVieux, J.A, Hardtke, H.A, Zhang, Y.J. Deposit date: 2022-07-12 Release date: 2022-12-28 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A mutagenic analysis of NahE, a hydratase-aldolase in the naphthalene degradative pathway. Arch.Biochem.Biophys., 733, 2023
6MRL	Cucumber Leaf Spot Virus Descriptor: CALCIUM ION, p41 Authors: Sherman, M.B, Smith, T.J. Deposit date: 2018-10-14 Release date: 2019-10-16 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Near-Atomic-Resolution Cryo-Electron Microscopy Structures of Cucumber Leaf Spot Virus and Red Clover Necrotic Mosaic Virus: Evolutionary Divergence at the Icosahedral Three-Fold Axes. J.Virol., 94, 2020
1G6R	A FUNCTIONAL HOT SPOT FOR ANTIGEN RECOGNITION IN A SUPERAGONIST TCR/MHC COMPLEX Descriptor: ALPHA T CELL RECEPTOR, BETA T CELL RECEPTOR, BETA-2 MICROGLOBULIN, ... Authors: Degano, M, Garcia, K.C, Apostolopoulos, V, Rudolph, M.G, Teyton, L, Wilson, I.A. Deposit date: 2000-11-07 Release date: 2000-11-15 Last modified: 2018-01-31 Method: X-RAY DIFFRACTION (2.8 Å) Cite: A functional hot spot for antigen recognition in a superagonist TCR/MHC complex. Immunity, 12, 2000
1G74	Toward changing specificity: adipocyte lipid binding protein mutant, oleic acid bound form Descriptor: ADIPOCYTE LIPID-BINDING PROTEIN, OLEIC ACID, PHOSPHATE ION Authors: Reese, A.J, Banaszak, L.J. Deposit date: 2000-11-08 Release date: 2003-06-10 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Specificity determinants for lipids bound to beta-barrel proteins. J.Lipid Res., 45, 2004
1GAW	CRYSTAL STRUCTURE ANALYSIS OF THE FERREDOXIN-NADP+ REDUCTASE FROM MAIZE LEAF Descriptor: FERREDOXIN-NADP+ REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE Authors: Kurisu, G, Kusunoki, M, Hase, T. Deposit date: 2000-05-17 Release date: 2001-02-07 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of the electron transfer complex between ferredoxin and ferredoxin-NADP(+) reductase. Nat.Struct.Biol., 8, 2001
2EBT	Solution structure of three tandem repeats of zf-C2H2 domains from human Kruppel-like factor 5 Descriptor: Krueppel-like factor 5, ZINC ION Authors: Nagashima, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-02-09 Release date: 2008-02-19 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of three tandem repeats of zf-C2H2 domains from human Kruppel-like factor 5 To be Published
6NFZ	Crystal structure of diphosphorylated HPK1 kinase domain in complex with sunitinib in the active state. Descriptor: Mitogen-activated protein kinase kinase kinase kinase 1, N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carboxamide Authors: Johnson, E, McTigue, M, Cronin, C.N. Deposit date: 2018-12-21 Release date: 2019-05-01 Last modified: 2019-06-26 Method: X-RAY DIFFRACTION (2.966 Å) Cite: Multiple conformational states of the HPK1 kinase domain in complex with sunitinib reveal the structural changes accompanying HPK1 trans-regulation. J.Biol.Chem., 294, 2019

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