PDB: 72960 resultsInfo pagesStatus searchChemie searchBIRD

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1B21	DELETION OF A BURIED SALT BRIDGE IN BARNASE Descriptor: PROTEIN (BARNASE), ZINC ION Authors: Vaughan, C.K, Harryson, P, Buckle, A.M, Oliveberg, M, Fersht, A.R. Deposit date: 1998-12-03 Release date: 1998-12-09 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2 Å) Cite: A structural double-mutant cycle: estimating the strength of a buried salt bridge in barnase. Acta Crystallogr.,Sect.D, 58, 2002
4BLU	Crystal structure of Escherichia coli 23S rRNA (A2030-N6)- methyltransferase RlmJ Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, ... Authors: Punekar, A.S, Liljeruhm, J, Shepherd, T.R, Forster, A.C, Selmer, M. Deposit date: 2013-05-04 Release date: 2013-08-21 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural and Functional Insights Into the Molecular Mechanism of Rrna M6A Methyltransferase Rlmj. Nucleic Acids Res., 41, 2013
1DIX	CRYSTAL STRUCTURE OF RNASE LE Descriptor: EXTRACELLULAR RIBONUCLEASE LE Authors: Tanaka, N, Nakamura, K.T. Deposit date: 1999-11-30 Release date: 2000-09-06 Last modified: 2017-10-04 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal structure of a plant ribonuclease, RNase LE. J.Mol.Biol., 298, 2000
1YXP	HIV-1 DIS RNA subtype F- Zn soaked Descriptor: 5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3', ZINC ION Authors: Ennifar, E, Dumas, P. Deposit date: 2005-02-22 Release date: 2006-01-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Polymorphism of Bulged-out Residues in HIV-1 RNA DIS Kissing Complex and Structure Comparison with Solution Studies. J.Mol.Biol., 356, 2006
1T9Z	Three-dimensional structure of a RNA-polymerase II binding protein. Descriptor: CITRIC ACID, Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, MAGNESIUM ION Authors: Kamenski, T, Heilmeier, S, Meinhart, A, Cramer, P. Deposit date: 2004-05-19 Release date: 2004-08-31 Last modified: 2021-10-27 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure and Mechanism of RNA Polymerase II CTD Phosphatases. Mol.Cell, 15, 2004
2VB0	Crystal structure of coxsackievirus B3 proteinase 3C Descriptor: CHLORIDE ION, POLYPROTEIN 3BCD Authors: Anand, K, Mesters, J.R, Goerlach, R, Zell, R, Hilgenfeld, R. Deposit date: 2007-09-05 Release date: 2008-10-28 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structure of Coxsackie Virus B3 Proteinase 3C To be Published
1Z7F	Crystal structure of 16 base pair RNA duplex containing a C-A mismatch Descriptor: 5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3', STRONTIUM ION Authors: Gherghe, C.M, Krahn, J.M, Weeks, K.M. Deposit date: 2005-03-24 Release date: 2005-10-18 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA. J.Am.Chem.Soc., 127, 2005
2LMC	Structure of T7 transcription factor Gp2-E. coli RNAp jaw domain complex Descriptor: Bacterial RNA polymerase inhibitor, DNA-directed RNA polymerase subunit beta Authors: Liu, M. Deposit date: 2011-11-29 Release date: 2012-03-14 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural and Mechanistic Basis for the Inhibition of Escherichia coli RNA Polymerase by T7 Gp2. Mol.Cell, 47, 2012
3UGP	Crystal structure of RNA-polymerase sigma subunit domain 2 complexed with -10 promoter element ssDNA oligo (TATAAT) Descriptor: 5'-D(*TP*GP*TP*AP*TP*AP*AP*TP*GP*GP*G)-3', POTASSIUM ION, RNA polymerase sigma factor Authors: Feklistov, A, Darst, S.A. Deposit date: 2011-11-02 Release date: 2011-12-07 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.697 Å) Cite: Structural basis for promoter-10 element recognition by the bacterial RNA polymerase sigma subunit. Cell(Cambridge,Mass.), 147, 2011
2HGH	Transcription Factor IIIA zinc fingers 4-6 bound to 5S rRNA 55mer (NMR structure) Descriptor: 55-MER, Transcription factor IIIA, ZINC ION Authors: Lee, B.M. Deposit date: 2006-06-27 Release date: 2006-08-01 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Induced Fit and 'Lock and Key' Recognition of 5 S RNA by Zinc Fingers of Transcription Factor IIIA J.Mol.Biol., 357, 2006
3EQL	Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with antibiotic myxopyronin Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Vassylyev, D.G, Vassylyeva, M.N, Artsimovitch, I. Deposit date: 2008-09-30 Release date: 2008-10-28 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Transcription inactivation through local refolding of the RNA polymerase structure. Nature, 457, 2009
7EEY	The structure of the N-terminal doamin of the Schizosaccharomyces pombe Tad2 adenosine deaminase Descriptor: SULFATE ION, tRNA-specific adenosine deaminase subunit tad2 Authors: Xie, W, Liu, X, Zhou, J. Deposit date: 2021-03-19 Release date: 2022-03-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Functional and structural investigation of N-terminal domain of the SpTad2/3 heterodimeric tRNA deaminase. Comput Struct Biotechnol J, 19, 2021
4YVH	Crystal Structure of H. influenzae TrmD in complex with sinefungin Descriptor: SINEFUNGIN, tRNA (guanine-N(1)-)-methyltransferase Authors: Yoshida, K, Ito, T, Yokoyama, S. Deposit date: 2015-03-20 Release date: 2015-07-15 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD. Proc.Natl.Acad.Sci.USA, 112, 2015
4YVG	Crystal Structure of H. influenzae TrmD in complex with AdoMet Descriptor: S-ADENOSYLMETHIONINE, tRNA (guanine-N(1)-)-methyltransferase Authors: Ito, T, Yokoyama, S. Deposit date: 2015-03-20 Release date: 2015-07-15 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.549 Å) Cite: Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD. Proc.Natl.Acad.Sci.USA, 112, 2015
3UGO	Crystal structure of RNA-polymerase sigma subunit domain 2 complexed with -10 promoter element ssDNA oligo (TACAAT) Descriptor: 5'-D(*TP*GP*TP*AP*CP*AP*AP*TP*GP*GP*G)-3', POTASSIUM ION, RNA polymerase sigma factor Authors: Feklistov, A, Darst, S.A. Deposit date: 2011-11-02 Release date: 2011-12-07 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.096 Å) Cite: Structural basis for promoter-10 element recognition by the bacterial RNA polymerase sigma subunit. Cell(Cambridge,Mass.), 147, 2011
3HXI	Crystal structure of Schistosome eIF4E complexed with m7GpppG and 4E-BP Descriptor: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE, Eukaryotic Translation Initiation 4E, Eukaryotic translation initiation factor 4E-binding protein 1 Authors: Liu, W, Zhao, R, Jones, D.N.M, Davis, R.E. Deposit date: 2009-06-20 Release date: 2009-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural insights into parasite EIF4E binding specificity for m7G and m2,2,7G mRNA cap. J.Biol.Chem., 284, 2009
1YVZ	Hepatitis C Virus RNA Polymerase Genotype 2a In Complex With Non- Nucleoside Analogue Inhibitor Descriptor: 3-[(2,4-DICHLOROBENZOYL)(ISOPROPYL)AMINO]-5-PHENYLTHIOPHENE-2-CARBOXYLIC ACID, RNA dependent RNA polymerase, SULFATE ION Authors: Biswal, B.K, Cherney, M.M, Wang, M, Chan, L, Yannopoulos, C.G, Bilimoria, D, Nicolas, O, Bedard, J, James, M.N.G. Deposit date: 2005-02-16 Release date: 2005-03-22 Last modified: 2017-10-11 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structures of the RNA dependent RNA polymerase genotype 2a of hepatitis C virus reveal two conformations and suggest mechanisms of inhibition by non-nucleoside inhibitors. J.Biol.Chem., 280, 2005
2KMJ	High resolution NMR solution structure of a complex of HIV-2 TAR RNA and a synthetic tripeptide in a 1:2 stoichiometry Descriptor: Pyrimidinylpeptide, RNA (28-MER) Authors: Ferner, J, Suhartono, M, Breitung, S, Jonker, H.R.A, Hennig, M, Woehnert, J, Goebel, M, Schwalbe, H. Deposit date: 2009-07-30 Release date: 2009-08-18 Last modified: 2023-11-15 Method: SOLUTION NMR Cite: Structures of HIV TAR RNA-ligand complexes reveal higher binding stoichiometries. Chembiochem, 10, 2009
1YVX	Hepatitis C Virus RNA Polymerase Genotype 2a In Complex With Non- Nucleoside Analogue Inhibitor Descriptor: 3-[ISOPROPYL(4-METHYLBENZOYL)AMINO]-5-PHENYLTHIOPHENE-2-CARBOXYLIC ACID, RNA dependent RNA polymerase, SULFATE ION Authors: Biswal, B.K, Cherney, M.M, Wang, M, Chan, L, Yannopoulos, C.G, Bilimoria, D, Nicolas, O, Bedard, J, James, M.N.G. Deposit date: 2005-02-16 Release date: 2005-03-22 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structures of the RNA dependent RNA polymerase genotype 2a of hepatitis C virus reveal two conformations and suggest mechanisms of inhibition by non-nucleoside inhibitors. J.Biol.Chem., 280, 2005
5COV	Structure and mechanism of a eukaryal nick-sealing RNA ligase K170M+Mn Descriptor: MANGANESE (II) ION, Naegleria gruberi RNA ligase Authors: Unciuleac, M.C, Goldgur, Y, Shuman, S. Deposit date: 2015-07-20 Release date: 2015-10-28 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure and two-metal mechanism of a eukaryal nick-sealing RNA ligase. Proc.Natl.Acad.Sci.USA, 112, 2015
5COT	Structure and mechanism of a eukaryal nick-sealing RNA ligase Descriptor: ADENOSINE MONOPHOSPHATE, Naegleria gruberi RNA ligase, UNKNOWN ATOM OR ION Authors: Unciuleac, M.C, Goldgur, Y, Shuman, S. Deposit date: 2015-07-20 Release date: 2015-10-28 Last modified: 2019-12-25 Method: X-RAY DIFFRACTION (1.69 Å) Cite: Structure and two-metal mechanism of a eukaryal nick-sealing RNA ligase. Proc.Natl.Acad.Sci.USA, 112, 2015
7EEO	Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA Descriptor: COBALT HEXAMMINE(III), DNA/RNA (27-MER) Authors: Kondo, J, Sekiguchi, S. Deposit date: 2021-03-19 Release date: 2022-03-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.701 Å) Cite: Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA To Be Published
7EEN	Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA Descriptor: CALCIUM ION, DNA/RNA (27-MER) Authors: Kondo, J, Sekiguchi, S. Deposit date: 2021-03-19 Release date: 2022-03-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA To Be Published
5COU	Structure and mechanism of a eukaryal nick-sealing RNA ligase K170M+ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, Naegleria gruberi RNA ligase Authors: Unciuleac, M.C, Goldgur, Y, Shuman, S. Deposit date: 2015-07-20 Release date: 2015-10-28 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure and two-metal mechanism of a eukaryal nick-sealing RNA ligase. Proc.Natl.Acad.Sci.USA, 112, 2015
3K4G	Crystal structure of E. coli RNA polymerase alpha subunit C-terminal domain Descriptor: DNA-directed RNA polymerase subunit alpha, SODIUM ION Authors: Lara-Gonzalez, S, Birktoft, J, Lawson, C.L. Deposit date: 2009-10-05 Release date: 2010-07-07 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structure of the Escherichia coli RNA polymerase alpha subunit C-terminal domain. Acta Crystallogr.,Sect.D, 66, 2010

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