PDB: 1466 resultsInfo pagesStatus searchChemie searchBIRD

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1YQB	Human Ubiquilin 3 Descriptor: Ubiquilin 3 Authors: Walker, J.R, Xue, S, Avvakumov, G.V, Newman, E.M, Mackenzie, F, Sundstrom, M, Arrowsmith, C, Edwards, A, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC) Deposit date: 2005-02-01 Release date: 2005-02-08 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2 Å) Cite: The Ubiquitin-like domain of Human Ubiquilin 3 To be Published
1ZW7	Elimination of the C-cap in Ubiquitin Structure, Dynamics and Thermodynamic Consequences Descriptor: Ubiquitin Authors: Ermolenko, D.N, Dangi, B, Gronenborn, A.M, Makhatadze, G.I. Deposit date: 2005-06-03 Release date: 2006-05-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Elimination of the C-cap in ubiquitin-structure, dynamics and thermodynamic consequences. Biophys.Chem., 126, 2007
1ZKH	Solution structure of a human ubiquitin-like domain in SF3A1 Descriptor: Splicing factor 3 subunit 1 Authors: Lukin, J.A, Dhe-Paganon, S, Guido, V, Lemak, A, Avvakumov, G.V, Xue, S, Newman, E.M, Mackenzie, F, Sundstrom, M, Edwards, A, Arrowsmith, C.H, Structural Genomics Consortium (SGC) Deposit date: 2005-05-02 Release date: 2005-05-10 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a human ubiquitin-like domain in SF3A1 To be Published
2BWF	Crystal structure of the UBL domain of Dsk2 from S. cerevisiae Descriptor: FORMIC ACID, UBIQUITIN-LIKE PROTEIN DSK2 Authors: Lowe, E.D, Hasan, N, Trempe, J.-F, Fonso, L, Noble, M.E.M, Endicott, J.A, Johnson, L.N, Brown, N.R. Deposit date: 2005-07-13 Release date: 2006-01-25 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.15 Å) Cite: Structures of the Dsk2 Ubl and Uba Domains and Their Complex. Acta Crystallogr.,Sect.D, 62, 2006
1YIW	X-ray Crystal Structure of a Chemically Synthesized Ubiquitin Descriptor: CADMIUM ION, CHLORIDE ION, Ubiquitin Authors: Bang, D, Makhatadze, G.I, Tereshko, V, Kossiakoff, A.A, Kent, S.B. Deposit date: 2005-01-13 Release date: 2005-06-14 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.39 Å) Cite: X-ray Crystal Structure of a Chemically Synthesized [D-Gln35]Ubiquitin Angew.Chem.Int.Ed.Engl., 44, 2005
2BGF	NMR structure of Lys48-linked di-ubiquitin using chemical shift perturbation data together with RDCs and 15N-relaxation data Descriptor: DI-UBIQUITIN Authors: Van Dijk, A.D.J, Fushman, D, Bonvin, A.M.J.J. Deposit date: 2004-12-22 Release date: 2005-08-31 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Various Strategies of Using Residual Dipolar Couplings in NMR-Driven Protein Docking: Application to Lys48-Linked Di-Ubiquitin and Validation Against 15N-Relaxation Data Proteins: Struct., Funct., Bioinf., 60, 2005
2BWE	The crystal structure of the complex between the UBA and UBL domains of Dsk2 Descriptor: DSK2 Authors: Lowe, E.D, Hasan, N, Trempe, J.-F, Fonso, L, Noble, M.E.M, Endicott, J.A, Johnson, L.N, Brown, N.R. Deposit date: 2005-07-13 Release date: 2006-01-25 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structures of the Dsk2 Ubl and Uba Domains and Their Complex. Acta Crystallogr.,Sect.D, 62, 2006
7CAP	Cyclic Lys48-linked triubiquitin Descriptor: Ubiquitin, ZINC ION Authors: Hiranyakorn, M, Yanaka, S, Satoh, T, Wilasri, T, Jityuti, B, Yagi-Utsumi, T, Kato, K. Deposit date: 2020-06-09 Release date: 2020-08-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.33 Å) Cite: NMR Characterization of Conformational Interconversions of Lys48-Linked Ubiquitin Chains. Int J Mol Sci, 21, 2020
7EAL	The structure of the A20-Binding Inhibitor of NF-kB 1 in complex with di-ubiquitin Descriptor: GLYCEROL, TNFAIP3-interacting protein 1, ubiquitin Authors: Lo, Y.C, Lin, S.C. Deposit date: 2021-03-07 Release date: 2021-07-21 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural and Biochemical Basis for Higher-Order Assembly between A20-Binding Inhibitor of NF-kappa B 1 (ABIN1) and M1-Linked Ubiquitins. J.Mol.Biol., 433, 2021
7EAO	The structure of the A20-binding inhibitor of NF-kB 1 in complex with tri-ubiquitin Descriptor: Polyubiquitin-C, TNFAIP3-interacting protein 1 Authors: Lo, Y.C, Lin, S.C. Deposit date: 2021-03-07 Release date: 2021-07-21 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural and Biochemical Basis for Higher-Order Assembly between A20-Binding Inhibitor of NF-kappa B 1 (ABIN1) and M1-Linked Ubiquitins. J.Mol.Biol., 433, 2021
7EB9	The structure of the A20-binding inhibitor of NF-kB 1 in complex with tetra-ubiquitin Descriptor: TNFAIP3-interacting protein 1, tetra ubiquitin Authors: Lo, Y.C, Lin, S.C. Deposit date: 2021-03-09 Release date: 2021-07-21 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural and Biochemical Basis for Higher-Order Assembly between A20-Binding Inhibitor of NF-kappa B 1 (ABIN1) and M1-Linked Ubiquitins. J.Mol.Biol., 433, 2021
7E62	Mouse TAB2 NZF in complex with Lys6-linked diubiquitin Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, TGF-beta-activated kinase 1 and MAP3K7-binding protein 2, Ubiquitin, ... Authors: Sato, Y, Li, Y, Okatsu, K, Fukai, S. Deposit date: 2021-02-21 Release date: 2021-08-18 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Structural basis for specific recognition of K6-linked polyubiquitin chains by the TAB2 NZF domain. Biophys.J., 120, 2021
4A20	Crystal structure of the Ubl domain of Mdy2 (Get5) at 1.78A Descriptor: SULFATE ION, UBIQUITIN-LIKE PROTEIN MDY2 Authors: Simon, A.C, Simpson, P.J, Murray, J.W, Isaacson, R.L. Deposit date: 2011-09-21 Release date: 2012-11-14 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Structure of the Sgt2/Get5 Complex Provides Insights Into Get-Mediated Targeting of Tail-Anchored Membrane Proteins Proc.Natl.Acad.Sci.USA, 110, 2013
7BU0	Crystal structure of a OTU deubiquitinase in complex with Ub-PA Descriptor: Polyubiquitin-B, Uncharacterized protein, prop-2-en-1-amine Authors: Ouyang, S.Y, Zhen, X.K. Deposit date: 2020-04-03 Release date: 2020-11-18 Last modified: 2023-04-05 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Interplay between bacterial deubiquitinase and ubiquitin E3 ligase regulates ubiquitin dynamics on Legionella phagosomes. Elife, 9, 2020
6W9S	Crystal structure of an OTU deubiquitinase from Escherichia albertii bound to ubiquitin Descriptor: FORMIC ACID, OTU domain-containing protein EschOTU, Ubiquitin Authors: Schubert, A.F, Pruneda, J.N, Komander, D. Deposit date: 2020-03-23 Release date: 2020-07-01 Last modified: 2020-08-12 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Identification and characterization of diverse OTU deubiquitinases in bacteria. Embo J., 39, 2020
3ALB	Cyclic Lys48-linked tetraubiquitin Descriptor: SULFATE ION, ubiquitin Authors: Satoh, T, Sakata, E, Yamamoto, S, Yamaguchi, Y, Sumiyoshi, A, Wakatsuki, S, Kato, K. Deposit date: 2010-07-29 Release date: 2010-08-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structure of cyclic Lys48-linked tetraubiquitin Biochem.Biophys.Res.Commun., 2010
3AXC	Crystal structure of linear diubiquitin Descriptor: GLYCEROL, Ubiquitin Authors: Rohaim, A, Kawasaki, M, Kato, R, Dikic, I, Wakatsuki, S. Deposit date: 2011-04-01 Release date: 2012-01-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Structure of a compact conformation of linear diubiquitin Acta Crystallogr.,Sect.D, 68, 2012
3B0A	Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin Descriptor: Polyubiquitin-C, RanBP-type and C3HC4-type zinc finger-containing protein 1, TRIS(HYDROXYETHYL)AMINOMETHANE, ... Authors: Sato, Y, Fujita, H, Yoshikawa, A, Yamashita, M, Yamagata, A, Kaiser, S.E, Iwai, K, Fukai, S. Deposit date: 2011-06-07 Release date: 2011-12-14 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex Proc.Natl.Acad.Sci.USA, 108, 2011
2W9N	crystal structure of linear di-ubiquitin Descriptor: CHLORIDE ION, UBIQUITIN, ZINC ION Authors: Komander, D, Reyes-Turcu, F, Wilkinson, K.D, Barford, D. Deposit date: 2009-01-27 Release date: 2009-04-28 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Molecular Discrimination of Structurally Equivalent Lys 63-Linked and Linear Polyubiquitin Chains. Embo Rep., 10, 2009
2WYQ	THE CRYSTAL STRUCTURE OF THE UBIQUITIN-LIKE (UBL) DOMAIN OF HHR23A (HUMAN HOMOLOGUE A OF RAD23) Descriptor: SULFATE ION, UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A Authors: Chen, Y.W. Deposit date: 2009-11-19 Release date: 2010-11-10 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.651 Å) Cite: The Crystal Structure of the Ubiquitin-Like (Ubl) Domain of Human Homologue a of Rad23 (Hhr23A) Protein Protein Eng.Des.Sel., 24, 2011
3B1L	Crystal Structure of parkin ubiquitin-like domain R33Q mutant Descriptor: E3 ubiquitin-protein ligase parkin Authors: Tomoo, K, Ikemiya, A, Amami, Y, In, Y, Ishida, T. Deposit date: 2011-07-04 Release date: 2012-07-04 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal Structure of parkin ubiquitin-like domain R33Q mutant to be published
2XEW	Crystal structure of K11-linked diubiquitin Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CITRATE ANION, ... Authors: Bremm, A, Freund, S.M.V, Komander, D. Deposit date: 2010-05-18 Release date: 2010-07-14 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Lys11-Linked Ubiquitin Chains Adopt Compact Conformations and are Preferentially Hydrolyzed by the Deubiquitinase Cezanne Nat.Struct.Mol.Biol., 17, 2010
6XQC	UbKEKS Descriptor: Polyubiquitin-B Authors: Delattre, P, Letourneau, D, Lavigne, P, Roucou, X, Boisvert, F.M. Deposit date: 2020-07-09 Release date: 2021-05-19 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution NMR structure of UbKEKS To Be Published
3AUL	Crystal structure of wild-type Lys48-linked diubiquitin in an open conformation Descriptor: Polyubiquitin-C Authors: Hirano, T, Olivier, S, Yagi, M, Takemoto, E, Hiromoto, T, Satoh, T, Mizushima, T, Kato, K. Deposit date: 2011-02-09 Release date: 2011-09-07 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Conformational dynamics of wild-type Lys48-linked diubiquitin in solution J.Biol.Chem., 286, 2011
2ZCB	Crystal Structure of ubiquitin P37A/P38A Descriptor: Ubiquitin, ZINC ION Authors: Kitahara, R, Tanaka, T, Sakata, E, Yamaguchi, Y, Kato, K, Yokoyama, S. Deposit date: 2007-11-08 Release date: 2007-11-20 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal Structure of ubiquitin P37A/P38A To be published

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