PDB: 68717 resultsInfo pagesStatus searchChemie searchBIRD

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8QMR	Succinic semialdehyde dehydrogenase from E. coli with bound NAD+ and succinic semialdehyde Descriptor: 4-oxobutanoic acid, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Succinate semialdehyde dehydrogenase [NAD(P)+] Sad Authors: He, H, Zarzycki, J, Erb, T.J. Deposit date: 2023-09-25 Release date: 2024-10-02 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies. Nat Commun, 15, 2024
8QMT	Succinic semialdehyde dehydrogenase from E. coli with Q262R substitution and bound NAD+, succinic semialdehyde Descriptor: 4-oxobutanoic acid, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Succinate semialdehyde dehydrogenase [NAD(P)+] Sad Authors: He, H, Zarzycki, J, Erb, T.J. Deposit date: 2023-09-25 Release date: 2024-10-02 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies. Nat Commun, 15, 2024
8QMS	Succinic semialdehyde dehydrogenase from E. coli with Q262R substitution and bound NAD+ Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Succinate semialdehyde dehydrogenase [NAD(P)+] Sad Authors: He, H, Zarzycki, J, Erb, T.J. Deposit date: 2023-09-25 Release date: 2024-10-02 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Adaptive laboratory evolution recruits the promiscuity of succinate semialdehyde dehydrogenase to repair different metabolic deficiencies. Nat Commun, 15, 2024
8QCZ	Cryo-EM structure of the outward-facing heme-bound FLVCR2 Descriptor: Heme transporter FLVCR2, PROTOPORPHYRIN IX CONTAINING FE Authors: Weng, T.-H, Wu, D, Safarian, S. Deposit date: 2023-08-28 Release date: 2024-09-11 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Cryo-EM structure of the outward-facing heme-bound FLVCR2 To Be Published
5C1C	Crystal Structure of the Pectin Methylesterase from Aspergillus niger in Deglycosylated Form Descriptor: ACETATE ION, CHLORIDE ION, GLYCEROL, ... Authors: Jameson, G.B, Williams, M.A.K, Loo, T.S, Kent, L.M, Melton, L.D, Mercadante, D. Deposit date: 2015-06-13 Release date: 2015-07-01 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structure and Properties of a Non-processive, Salt-requiring, and Acidophilic Pectin Methylesterase from Aspergillus niger Provide Insights into the Key Determinants of Processivity Control. J.Biol.Chem., 291, 2016
5C1X	Crystal structure of EV71 3C Proteinase in complex with Compound VIII Descriptor: (phenylmethyl) N-[(2S)-1-oxidanylidene-1-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-3-phenyl-propan-2-yl]carbamate, 3C proteinase Authors: Zhang, L, Huang, G, Cai, Q, Zhao, C, Ren, H, Li, P, Li, N, Chen, S, Li, J, Lin, T. Deposit date: 2015-06-15 Release date: 2016-06-01 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Optimize the interactions at S4 with efficient inhibitors targeting 3C proteinase from enterovirus 71 J.Mol.Recognit., 29, 2016
8Q6T	Helical reconstruction of the relaxed thick filament from FIB milled left ventricular mouse myofibrils Descriptor: Myosin binding protein C, cardiac, Myosin light chain 3, ... Authors: Tamborrini, D, Raunser, S. Deposit date: 2023-08-14 Release date: 2023-11-01 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (18 Å) Cite: Structure of the native myosin filament in the relaxed cardiac sarcomere. Nature, 623, 2023
8QCB	CryoEM structure of a S. Cerevisiae Ski2387 complex in the open state Descriptor: Antiviral helicase SKI2, Antiviral protein SKI8, Superkiller protein 3, ... Authors: Keidel, A, Koegel, A, Reichelt, P, Kowalinski, E, Schaefer, I.B, Conti, E. Deposit date: 2023-08-25 Release date: 2023-11-08 Last modified: 2025-07-09 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Concerted structural rearrangements enable RNA channeling into the cytoplasmic Ski238-Ski7-exosome assembly. Mol.Cell, 83, 2023
5BZH	Crystal structure of the murine CD44 hyaluronan binding domain complex with a small molecule Descriptor: 3-(3,4-dihydroisoquinolin-2(1H)-yl)propan-1-amine, CD44 antigen, DIMETHYL SULFOXIDE Authors: Liu, L.K, Finzel, B.C. Deposit date: 2015-06-11 Release date: 2016-06-29 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule To Be Published
3FYC	Crystal Structure of Dim1 from the thermophilic archeon, Methanocaldococcus jannaschi Descriptor: PHOSPHATE ION, Probable dimethyladenosine transferase Authors: Scarsdale, J.N, Musayev, F.N, Rife, J.P. Deposit date: 2009-01-22 Release date: 2009-06-30 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structural and functional divergence within the Dim1/KsgA family of rRNA methyltransferases. J.Mol.Biol., 391, 2009
3GP8	Crystal structure of the binary complex of RecD2 with DNA Descriptor: 5'-D(*TP*TP*TP*TP*TP*T*TP*TP*TP*TP*TP*TP*TP*T)-3', Exodeoxyribonuclease V, subunit RecD, ... Authors: Saikrishnan, K, Cook, N, Wigley, D.B. Deposit date: 2009-03-23 Release date: 2009-06-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Mechanistic basis of 5'-3' translocation in SF1B helicases. Cell(Cambridge,Mass.), 137, 2009
5A6J	GH20C, Beta-hexosaminidase from Streptococcus pneumoniae Descriptor: 1,2-ETHANEDIOL, N-ACETYL-BETA-D-GLUCOSAMINIDASE Authors: Cid, M, Robb, C.S, Higgins, M.A, Boraston, A.B. Deposit date: 2015-06-26 Release date: 2015-09-23 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.94 Å) Cite: A Second beta-Hexosaminidase Encoded in the Streptococcus pneumoniae Genome Provides an Expanded Biochemical Ability to Degrade Host Glycans. J. Biol. Chem., 290, 2015
3GNU	Toxin fold as basis for microbial attack and plant defense Descriptor: 25 kDa protein elicitor, CHLORIDE ION, GUANIDINE Authors: Ottmann, C, Luberacki, B, Kuefner, I, Koch, W, Brunner, F, Weyand, M, Mattinen, L, Pirhonen, M, Anderluh, G, Seitz, H.U, Nuernberger, T, Oecking, C. Deposit date: 2009-03-18 Release date: 2009-06-09 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: A common toxin fold mediates microbial attack and plant defense Proc.Natl.Acad.Sci.USA, 106, 2009
5B05	Lysozyme (control experiment) Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ... Authors: Kita, A, Morimoto, Y. Deposit date: 2015-10-28 Release date: 2016-01-13 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: An Effective Deuterium Exchange Method for Neutron Crystal Structure Analysis with Unfolding-Refolding Processes Mol Biotechnol., 58, 2016
5CMX	X-ray structure of the complex between human alpha thrombin and a duplex/quadruplex 31-mer DNA aptamer Descriptor: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, POTASSIUM ION, RE31, ... Authors: Russo Krauss, I, Pica, A, Napolitano, V, Sica, F. Deposit date: 2015-07-17 Release date: 2016-01-13 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.98 Å) Cite: Different duplex/quadruplex junctions determine the properties of anti-thrombin aptamers with mixed folding. Nucleic Acids Res., 44, 2016
3GWG	Crystal structure of CheY of Helicobacter pylori Descriptor: Chemotaxis protein cheY homolog, MAGNESIUM ION, SULFATE ION Authors: Lam, K.H, Ling, T.K, Au, S.W. Deposit date: 2009-04-01 Release date: 2010-03-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of activated CheY1 from Helicobacter pylori. J.Bacteriol., 192, 2010
3GJP	Crystal structure of mutant coiled coil GCN4 leucine zipper Descriptor: General control protein GCN4 Authors: Honnappa, S, Steinmetz, M.O. Deposit date: 2009-03-09 Release date: 2010-03-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2 Å) Cite: Molecular basis of coiled-coil oligomerization-state specificity Proc.Natl.Acad.Sci.USA, 107, 2010
5B1Z	Crystal structure of Bcl-xL in complex with HBx-BH3 motif Descriptor: Bcl-2-like protein 1, Peptide from Protein X Authors: Yuan, Y.A. Deposit date: 2015-12-22 Release date: 2016-12-28 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal structure of Bcl-xL in complex with HBx-BH3 motif To Be Published
5B59	Hen egg-white lysozyme modified with a keto-ABNO. Descriptor: (1~{S},5~{R})-9-oxidanyl-9-azabicyclo[3.3.1]nonan-3-one, Lysozyme C Authors: Sasaki, D, Seki, Y, Sohma, Y, Oisaki, K, Kanai, M. Deposit date: 2016-04-28 Release date: 2016-09-14 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2 Å) Cite: Transition Metal-Free Tryptophan-Selective Bioconjugation of Proteins J.Am.Chem.Soc., 138, 2016
5B06	Lysozyme (denatured by NaOD and refolded) Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ... Authors: Kita, A, Morimoto, Y. Deposit date: 2015-10-28 Release date: 2016-01-13 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (1.8 Å) Cite: An Effective Deuterium Exchange Method for Neutron Crystal Structure Analysis with Unfolding-Refolding Processes Mol Biotechnol., 58, 2016
5CK7	Mouse ADP-dependent Glucokinase; AMP bound Descriptor: ADENOSINE MONOPHOSPHATE, ADP-dependent glucokinase Authors: Richter, J.P, Ronimus, R.S, Sutherland-Smith, A.J. Deposit date: 2015-07-15 Release date: 2015-11-18 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.99 Å) Cite: The Structural and Functional Characterization of Mammalian ADP-dependent Glucokinase. J.Biol.Chem., 291, 2016
3GRU	Crystal Structure of the Complex between AMP and Methanocaldococcus jannaschi Dim1 Descriptor: ADENOSINE MONOPHOSPHATE, Dimethyladenosine transferase, SULFATE ION Authors: Scarsdale, J.N, Musayev, F.N, Rife, J.P. Deposit date: 2009-03-26 Release date: 2010-03-31 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Binding of adenosine-based ligands to the MjDim1 rRNA methyltransferase: implications for reaction mechanism and drug design. Biochemistry, 49, 2010
3K3U	The V59W mutation blocks the distal pocket of the hemoglobin dehaloperoxidase from Amphitrite ornata Descriptor: Dehaloperoxidase A, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION Authors: de Serrano, V, Davis, M.F, Franzen, S. Deposit date: 2009-10-05 Release date: 2010-11-03 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.63 Å) Cite: The V59W mutation blocks the distal pocket of the hemoglobin dehaloperoxidase from Amphitrite ornata To be Published
3H1F	Crystal structure of CheY mutant D53A of Helicobacter pylori Descriptor: Chemotaxis protein cheY homolog, MAGNESIUM ION, SULFATE ION Authors: Lam, K.H, Ling, T.K, Au, S.W. Deposit date: 2009-04-12 Release date: 2010-03-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of activated CheY1 from Helicobacter pylori. J.Bacteriol., 192, 2010
3H3P	Crystal structure of HIV epitope-scaffold 4E10 Fv complex Descriptor: 4E10_S0_1TJLC_004_N, CALCIUM ION, Fv 4E10 heavy chain, ... Authors: Holmes, M.A. Deposit date: 2009-04-16 Release date: 2010-01-19 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Interactions between lipids and human anti-HIV antibody 4E10 can be reduced without ablating neutralizing activity J.Virol., 84, 2010

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