PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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4X01	S. pombe Ctp1 tetramerization domain Descriptor: 1,2-ETHANEDIOL, DNA binding ctp1 Authors: Andres, S.N, Williams, R.S. Deposit date: 2014-11-20 Release date: 2015-01-14 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.201 Å) Cite: Tetrameric Ctp1 coordinates DNA binding and DNA bridging in DNA double-strand-break repair. Nat.Struct.Mol.Biol., 22, 2015
4G3I	Crystal structure of Dpo4 in complex with DNA duplex Descriptor: CALCIUM ION, DNA, DNA polymerase IV Authors: Yan, Y.Y, Gan, J.H, Huang, Z. Deposit date: 2012-07-14 Release date: 2013-08-07 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of Dpo4 in complex with DNA duplex To be Published
6CIJ	Cryo-EM structure of mouse RAG1/2 HFC complex containing partial HMGB1 linker(3.9 A) Descriptor: CALCIUM ION, DNA (30-MER), DNA (41-MER), ... Authors: Chen, X, Kim, M, Chuenchor, W, Cui, Y, Zhang, X, Zhou, Z.H, Gellert, M, Yang, W. Deposit date: 2018-02-24 Release date: 2018-04-25 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Cracking the DNA Code for V(D)J Recombination. Mol. Cell, 70, 2018
5TVQ	Mouse Tdp2 catalytic domain bound to SUMO2 Descriptor: ACETATE ION, CALCIUM ION, Small ubiquitin-related modifier 2, ... Authors: Schellenberg, M.J, Williams, R.S. Deposit date: 2016-11-09 Release date: 2017-09-27 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.35 Å) Cite: ZATT (ZNF451)-mediated resolution of topoisomerase 2 DNA-protein cross-links. Science, 357, 2017
6JYW	Crystal structure of the transcription regulator CadR N81M mutant from P. putida in complex with Cadmium(II) and DNA Descriptor: CADMIUM ION, CadR, DNA (5'-D(*AP*AP*CP*CP*CP*TP*AP*TP*AP*GP*TP*GP*GP*CP*TP*AP*CP*AP*GP*GP*GP*T)-3'), ... Authors: Liu, X.C, Chen, H. Deposit date: 2019-04-29 Release date: 2020-04-29 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Crystal structure of the transcription regulator CadR N81M mutant from P. putida in complex with Cadmium(II) and DNA To Be Published
2M1B	Solution structure of the CHXR DNA-binding domain Descriptor: Transcriptional regulatory protein, C terminal family protein Authors: Hickey, J.M, Anbanandam, A.M, Hefty, S.P. Deposit date: 2012-11-21 Release date: 2014-03-26 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Atypical response regulator ChxR from Chlamydia trachomatis is structurally poised for DNA binding. Plos One, 9, 2014
6OES	Cryo-EM structure of mouse RAG1/2 STC complex (without NBD domain) Descriptor: CALCIUM ION, DNA (34-MER), DNA (35-MER), ... Authors: Chen, X, Cui, Y, Zhou, Z.H, Yang, W, Gellert, M. Deposit date: 2019-03-27 Release date: 2020-01-22 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.06 Å) Cite: How mouse RAG recombinase avoids DNA transposition. Nat.Struct.Mol.Biol., 27, 2020
6MCC	CryoEM structure of AcrIIA2 homolog in complex with CRISPR-Cas9 Descriptor: Anti-CRISPR AcrIIA2 Homolog, CRISPR-associated endonuclease Cas9, Single guide RNA (116-MER) Authors: Jiang, F, Liu, J.J, Doudna, J.A. Deposit date: 2018-08-31 Release date: 2019-01-16 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Temperature-Responsive Competitive Inhibition of CRISPR-Cas9. Mol. Cell, 73, 2019
2Z0L	Crystal structure of EBV-DNA polymerase accessory protein BMRF1 Descriptor: CHLORIDE ION, Early antigen protein D Authors: Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-05-07 Release date: 2008-05-13 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structure of Epstein-Barr virus DNA polymerase processivity factor BMRF1 J.Biol.Chem., 284, 2009
6OET	Cryo-EM structure of mouse RAG1/2 STC complex Descriptor: CALCIUM ION, DNA (30-MER), DNA (39-MER), ... Authors: Chen, X, Cui, Y, Zhou, Z.H, Yang, W, Gellert, M. Deposit date: 2019-03-27 Release date: 2020-01-22 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: How mouse RAG recombinase avoids DNA transposition. Nat.Struct.Mol.Biol., 27, 2020
1S40	SOLUTION STRUCTURE OF THE CDC13 DNA-BINDING DOMAIN COMPLEXED WITH A SINGLE-STRANDED TELOMERIC DNA 11-MER Descriptor: 5'-D(*GP*TP*GP*TP*GP*GP*GP*TP*GP*TP*G)-3', Cell division control protein 13 Authors: Mitton-Fry, R.M, Anderson, E.M, Theobald, D.L, Glustrom, L.W, Wuttke, D.S. Deposit date: 2004-01-14 Release date: 2004-05-04 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural basis for telomeric single-stranded DNA recognition by yeast Cdc13 J.Mol.Biol., 338, 2004
3QYN	Structure of p63 DNA Binding Domain in Complex with a 22 Base Pair A/T Rich Response Element Containing 2 Base Pair Spacer Between Half Sites Descriptor: 5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*TP*TP*AP*AP*AP*AP*CP*AP*TP*GP*TP*TP*T)-3', Tumor protein 63, ZINC ION Authors: Chen, C, Herzberg, O. Deposit date: 2011-03-03 Release date: 2011-04-06 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structures of p63 DNA binding domain in complexes with half-site and with spacer-containing full response elements. Proc.Natl.Acad.Sci.USA, 108, 2011
6MCB	CryoEM structure of AcrIIA2 in complex with CRISPR-Cas9 Descriptor: Anti-CRISPR protein AcrIIA2, CRISPR-associated endonuclease Cas9, Single guide RNA (116-MER) Authors: Jiang, F, Liu, J.J, Doudna, J.A. Deposit date: 2018-08-31 Release date: 2019-01-16 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Temperature-Responsive Competitive Inhibition of CRISPR-Cas9. Mol. Cell, 73, 2019
6PA7	The cryo-EM structure of the human DNMT3A2-DNMT3B3 complex bound to nucleosome. Descriptor: CHLORIDE ION, DNA (167-MER), DNA (cytosine-5)-methyltransferase 3A, ... Authors: Xu, T.H, Liu, M, Zhou, X.E, Liang, G, Zhao, G, Xu, H.E, Melcher, K, Jones, P.A. Deposit date: 2019-06-11 Release date: 2020-06-17 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (2.94 Å) Cite: Structure of nucleosome-bound DNA methyltransferases DNMT3A and DNMT3B. Nature, 586, 2020
6T1F	Crystal structure of the C-terminally truncated chromosome-partitioning protein ParB from Caulobacter crescentus complexed to the centromeric parS site Descriptor: Chromosome-partitioning protein ParB, DNA (5'-D(*GP*GP*AP*TP*GP*TP*TP*TP*CP*AP*CP*GP*TP*GP*AP*AP*AP*CP*AP*TP*CP*C)-3') Authors: Jalal, A.S.B, Pastrana, C.L, Tran, N.T, Stevenson, C.E.M, Lawson, D.M, Moreno-Herrero, F, Le, T.B.K. Deposit date: 2019-10-04 Release date: 2020-10-14 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.9 Å) Cite: A CTP-dependent gating mechanism enables ParB spreading on DNA. Elife, 10, 2021
2BKY	Crystal structure of the Alba1:Alba2 heterodimer from sulfolobus solfataricus Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA/RNA-BINDING PROTEIN ALBA 1, DNA/RNA-BINDING PROTEIN ALBA 2 Authors: Jelinska, C, Conroy, M.J, Craven, C.J, Bullough, P.A, Waltho, J.P, Taylor, G.L, White, M.F. Deposit date: 2005-02-22 Release date: 2005-07-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Obligate Heterodimerization of the Archaeal Alba2 Protein with Alba1 Provides a Mechanism for Control of DNA Packaging. Structure, 13, 2005
1NVP	HUMAN TFIIA/TBP/DNA COMPLEX Descriptor: 5'-D(*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*CP*CP*CP*CP*C)-3', 5'-D(*GP*GP*GP*GP*GP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*G)-3', TATA box binding protein, ... Authors: Bleichenbacher, M, Tan, S, Richmond, T.J. Deposit date: 2003-02-04 Release date: 2003-10-21 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes. J.Mol.Biol., 332, 2003
4Z8F	Fab structure of antibody S1-15 in complex with ssDNA DNA, 5'-p5(dT)p-3' Descriptor: 5'-D(P*TP*TP*TP*TP*T)-3', S1-15 Fab (IgG2b kappa) light chain, S1-15 Fab (IgG2b) heavy chain Authors: Haji-Ghassemi, O, Evans, S.V. Deposit date: 2015-04-08 Release date: 2015-06-24 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural Basis for Antibody Recognition of Lipid A: INSIGHTS TO POLYSPECIFICITY TOWARD SINGLE-STRANDED DNA. J.Biol.Chem., 290, 2015
4Z95	Fab structure of antibody S1-15 in complex with ssDNA DNA, 5'-5(dT)-p-3' Descriptor: PHOSPHATE ION, S1-15 Fab (IgG2b) heavy chain, S1-15 Fab (IgG2b) light chain Authors: Haji-Ghassemi, O, Evans, S.V. Deposit date: 2015-04-09 Release date: 2015-06-24 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Structural Basis for Antibody Recognition of Lipid A: INSIGHTS TO POLYSPECIFICITY TOWARD SINGLE-STRANDED DNA. J.Biol.Chem., 290, 2015
3QYM	Structure of p63 DNA Binding Domain in Complex with a 10 Base Pair A/T Rich Response Element Half Site Descriptor: 5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*T)-3', Tumor protein 63, ZINC ION Authors: Herzberg, O, Chen, C. Deposit date: 2011-03-03 Release date: 2011-04-06 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structures of p63 DNA binding domain in complexes with half-site and with spacer-containing full response elements. Proc.Natl.Acad.Sci.USA, 108, 2011
4G91	CCAAT-binding complex from Aspergillus nidulans Descriptor: HAPB protein, HapE, Transcription factor HapC (Eurofung) Authors: Huber, E.M, Scharf, D.H, Hortschansky, P, Groll, M, Brakhage, A.A. Deposit date: 2012-07-23 Release date: 2012-10-31 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: DNA Minor Groove Sensing and Widening by the CCAAT-Binding Complex. Structure, 20, 2012
1W0U	hTRF2 DNA-binding domain in complex with telomeric DNA. Descriptor: 5'-D(*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP *CP*CP*CP*TP*AP*GP*A)-3', 5'-D(*TP*CP*TP*AP*GP*GP*GP*TP*TP*AP *GP*GP*GP*TP*TP*AP*G)-3', TELOMERIC REPEAT BINDING FACTOR 2 Authors: Court, R.I, Chapman, L.M, Fairall, L, Rhodes, D. Deposit date: 2004-06-11 Release date: 2004-12-22 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: How the Human Telomeric Proteins Trf1 and Trf2 Recognize Telomeric DNA: A View from High-Resolution Crystal Structures Embo Rep., 6, 2005
3V6H	Replication of N2,3-Ethenoguanine by DNA Polymerases Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*G*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*(DOC))-3'), ... Authors: Zhao, L. Deposit date: 2011-12-19 Release date: 2012-04-25 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Replication of n(2) ,3-ethenoguanine by DNA polymerases. Angew.Chem.Int.Ed.Engl., 51, 2012
1J5K	COMPLEX OF THE KH3 DOMAIN OF HNRNP K WITH A SINGLE_STRANDED 10MER DNA OLIGONUCLEOTIDE Descriptor: 5'-D(*AP*TP*AP*T*TP*CP*CP*CP*TP*C)-3', Heterogeneous nuclear ribonucleoprotein K Authors: Clore, G.M, Braddock, D.T. Deposit date: 2002-05-13 Release date: 2002-07-10 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Molecular basis of sequence-specific single-stranded DNA recognition by KH domains: solution structure of a complex between hnRNP K KH3 and single-stranded DNA. EMBO J., 21, 2002
3V6K	Replication of N2,3-Ethenoguanine by DNA Polymerases Descriptor: CALCIUM ION, DNA (5'-D(*TP*CP*AP*CP*(EFG)P*GP*AP*AP*TP*CP*CP*TP*TP*C)-3'), DNA (5'-D(P*GP*AP*AP*GP*GP*AP*TP*TP*CP*(2DT))-3'), ... Authors: Zhao, L. Deposit date: 2011-12-20 Release date: 2012-04-25 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Replication of n(2) ,3-ethenoguanine by DNA polymerases. Angew.Chem.Int.Ed.Engl., 51, 2012

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