Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7Z8B
DownloadVisualize
BU of 7z8b by Molmil
Structure of CRL7FBXW8 reveals coupling with CUL1-RBX1/ROC1 for multi-cullin-RING E3-catalyzed ubiquitin ligation
Descriptor: Cullin-7, E3 ubiquitin-protein ligase RBX1, F-box/WD repeat-containing protein 8, ...
Authors:Hopf, L.V.M, Schulman, B.A.
Deposit date:2022-03-17
Release date:2022-08-24
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure of CRL7 FBXW8 reveals coupling with CUL1-RBX1/ROC1 for multi-cullin-RING E3-catalyzed ubiquitin ligation.
Nat.Struct.Mol.Biol., 29, 2022
7Z7H
DownloadVisualize
BU of 7z7h by Molmil
Structure of P. luminescens TccC3-F-actin complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5-DIPHOSPHORIBOSE, Actin, ...
Authors:Belyy, A, Raunser, S.
Deposit date:2022-03-15
Release date:2022-06-29
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Mechanism of threonine ADP-ribosylation of F-actin by a Tc toxin.
Nat Commun, 13, 2022
7ZDU
DownloadVisualize
BU of 7zdu by Molmil
Occ(apo/return) conformation of CydDC mutant (E500Q.C) in ATP(CydC)/ATP(CydD) bound state (Dataset-19)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, ...
Authors:Wu, D, Safarian, S.
Deposit date:2022-03-29
Release date:2023-04-19
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Dissecting the conformational complexity and mechanism of a bacterial heme transporter.
Nat.Chem.Biol., 19, 2023
7ZIX
DownloadVisualize
BU of 7zix by Molmil
X-ray structure of the haloalkane dehalogenase HaloTag7 bound to a butylmethanesulfonamide tetramethylrhodamine ligand (TMR-S4)
Descriptor: Haloalkane dehalogenase, [9-[2-carboxy-5-[2-[2-[4-(methylsulfonylamino)butoxy]ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium
Authors:Tarnawski, M, Kompa, J, Johnsson, K, Hiblot, J.
Deposit date:2022-04-08
Release date:2023-04-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:X-ray structure of the haloalkane dehalogenase HaloTag7 bound to a butylmethanesulfonamide tetramethylrhodamine ligand (HSAm(4)-TMR)
To Be Published
7ZDC
DownloadVisualize
BU of 7zdc by Molmil
IF(heme/confined) conformation of CydDC in ADP(CydD) bound state (Dataset-3)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-binding/permease protein CydC, ATP-binding/permease protein CydD, ...
Authors:Wu, D, Safarian, S.
Deposit date:2022-03-29
Release date:2023-04-19
Last modified:2023-11-01
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Dissecting the conformational complexity and mechanism of a bacterial heme transporter.
Nat.Chem.Biol., 19, 2023
4PO5
DownloadVisualize
BU of 4po5 by Molmil
Crystal structure of allophycocyanin B from Synechocystis PCC 6803
Descriptor: Allophycocyanin beta chain, Allophycocyanin subunit alpha-B, PHYCOCYANOBILIN, ...
Authors:Pang, P.P, Dong, L.L, Sun, Y.F, Zeng, X.L, Ding, W.L, Scheer, H, Yang, X, Zhao, K.H.
Deposit date:2014-02-24
Release date:2014-10-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.751 Å)
Cite:The structure of allophycocyanin B from Synechocystis PCC 6803 reveals the structural basis for the extreme redshift of the terminal emitter in phycobilisomes.
Acta Crystallogr.,Sect.D, 70, 2014
7ZD5
DownloadVisualize
BU of 7zd5 by Molmil
IF(apo/as isolated) conformation of CydDC (Dataset-1)
Descriptor: ATP-binding/permease protein CydC, ATP-binding/permease protein CydD
Authors:Wu, D, Safarian, S.
Deposit date:2022-03-29
Release date:2023-04-19
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Dissecting the conformational complexity and mechanism of a bacterial heme transporter.
Nat.Chem.Biol., 19, 2023
7ZS0
DownloadVisualize
BU of 7zs0 by Molmil
Diheme cytochrome c Kustd1711 from Kuenenia stuttgartiensis
Descriptor: CALCIUM ION, GLYCEROL, HEME C, ...
Authors:Akram, M, Barends, T.
Deposit date:2022-05-05
Release date:2023-05-17
Last modified:2025-01-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Redox potential tuning by calcium ions in a novel c-type cytochrome from an anammox organism.
J.Biol.Chem., 2024
7ZS1
DownloadVisualize
BU of 7zs1 by Molmil
Diheme cytochrome c Kustd1711 from Kuenenia stuttgartiensis, M292C mutant
Descriptor: CALCIUM ION, GLYCEROL, HEME C, ...
Authors:Akram, M, Barends, T.
Deposit date:2022-05-05
Release date:2023-05-17
Last modified:2025-01-22
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Redox potential tuning by calcium ions in a novel c-type cytochrome from an anammox organism.
J.Biol.Chem., 2024
7ZS2
DownloadVisualize
BU of 7zs2 by Molmil
Diheme cytochrome c Kustd1711 from Kuenenia stuttgartiensis, M292H mutant
Descriptor: CALCIUM ION, HEME C, Hypothetical (Diheme) protein, ...
Authors:Akram, M, Barends, T.
Deposit date:2022-05-05
Release date:2023-05-17
Last modified:2025-01-22
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Redox potential tuning by calcium ions in a novel c-type cytochrome from an anammox organism.
J.Biol.Chem., 2024
7QKR
DownloadVisualize
BU of 7qkr by Molmil
Cryo-EM structure of ABC transporter STE6-2p from Pichia pastoris with Verapamil at 3.2 A resolution
Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, Dexverapamil, MAGNESIUM ION, ...
Authors:Schleker, E.S.M, Reinhart, C.
Deposit date:2021-12-18
Release date:2022-10-26
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural and functional investigation of ABC transporter STE6-2p from Pichia pastoris reveals unexpected interaction with sterol molecules.
Proc.Natl.Acad.Sci.USA, 119, 2022
8AW5
DownloadVisualize
BU of 8aw5 by Molmil
Cryo-EM structure of heme A synthase trimer from Aquifex aeolicus
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, Heme O oxygenase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hui, Z, Guoliang, Z.
Deposit date:2022-08-29
Release date:2023-09-06
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structure of heme A synthase trimer from Aquifex aeolicus
To Be Published
8B4I
DownloadVisualize
BU of 8b4i by Molmil
Cryo-EM structure of the Neurospora crassa TOM core complex at 3.3 angstrom
Descriptor: 2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol, DIUNDECYL PHOSPHATIDYL CHOLINE, Mitochondrial import receptor subunit Tom22, ...
Authors:Ornelas, P, Kuehlbrandt, W.
Deposit date:2022-09-20
Release date:2023-08-09
Last modified:2023-08-30
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Two conformations of the Tom20 preprotein receptor in the TOM holo complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
7ZJV
DownloadVisualize
BU of 7zjv by Molmil
Structure of human USPL1 in covalent complex with DeltaN-SUMO2/3-PA probe
Descriptor: CHLORIDE ION, SUMO-specific isopeptidase USPL1, Small ubiquitin-related modifier 2, ...
Authors:Zhao, Z, Gersch, M.
Deposit date:2022-04-12
Release date:2023-09-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Native Semisynthesis of Isopeptide-Linked Substrates for Specificity Analysis of Deubiquitinases and Ubl Proteases.
J.Am.Chem.Soc., 145, 2023
7ZJU
DownloadVisualize
BU of 7zju by Molmil
Structure of human USPL1 in covalent complex with SUMO3-2Br probe
Descriptor: 2-bromanylethanamine, CALCIUM ION, CHLORIDE ION, ...
Authors:Zhao, Z, Gersch, M.
Deposit date:2022-04-12
Release date:2023-09-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Native Semisynthesis of Isopeptide-Linked Substrates for Specificity Analysis of Deubiquitinases and Ubl Proteases.
J.Am.Chem.Soc., 145, 2023
7ZOX
DownloadVisualize
BU of 7zox by Molmil
Nup93 in complex with xhNup93-Nb4i and xNup93-Nb2t
Descriptor: Nuclear pore complex protein Nup93, xNup93-Nb2t, xhNup93-Nb4i
Authors:Fu, Z, Guttler, T, Colom, M.S.
Deposit date:2022-04-26
Release date:2023-11-08
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:A checkpoint function for Nup98 in nuclear pore formation suggested by novel inhibitory nanobodies.
Embo J., 2024
8AN1
DownloadVisualize
BU of 8an1 by Molmil
Structure of a first level Sierpinski triangle formed by a citrate synthase
Descriptor: Citrate synthase
Authors:Lo, Y.K, Bohn, S, Sendker, F.L, Schuller, J.M, Hochberg, G.
Deposit date:2022-08-04
Release date:2024-02-21
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (3.93 Å)
Cite:Emergence of fractal geometries in the evolution of a metabolic enzyme.
Nature, 628, 2024
8A9E
DownloadVisualize
BU of 8a9e by Molmil
Lysozyme, 9-11 fs FEL pulses as determined by XTCAV
Descriptor: 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID, GADOLINIUM ATOM, Lysozyme
Authors:Barends, T, Nass, K, Gorel, A, Schlichting, I.
Deposit date:2022-06-28
Release date:2023-07-12
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.665 Å)
Cite:Microcrystallization methods
To Be Published
8CUY
DownloadVisualize
BU of 8cuy by Molmil
ACP1-KS-AT domains of mycobacterial Pks13
Descriptor: 4'-PHOSPHOPANTETHEINE, Polyketide synthase PKS13, UNKNOWN LIGAND
Authors:Kim, S.K, Dickinson, M.S, Finer-Moore, J.S, Rosenberg, O.S, Stroud, R.M.
Deposit date:2022-05-17
Release date:2023-02-15
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.
Nat.Struct.Mol.Biol., 30, 2023
8CV0
DownloadVisualize
BU of 8cv0 by Molmil
KS-AT domains of mycobacterial Pks13 with outward AT conformation
Descriptor: Polyketide synthase PKS13, UNKNOWN LIGAND
Authors:Kim, S.K, Dickinson, M.S, Finer-Moore, J.S, Rosenberg, O.S, Stroud, R.M.
Deposit date:2022-05-17
Release date:2023-02-15
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.
Nat.Struct.Mol.Biol., 30, 2023
8CUZ
DownloadVisualize
BU of 8cuz by Molmil
KS-AT domains of mycobacterial Pks13 with inward AT conformation
Descriptor: Polyketide synthase PKS13, UNKNOWN LIGAND
Authors:Kim, S.K, Dickinson, M.S, Finer-Moore, J.S, Rosenberg, O.S, Stroud, R.M.
Deposit date:2022-05-17
Release date:2023-02-15
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.
Nat.Struct.Mol.Biol., 30, 2023
8A3O
DownloadVisualize
BU of 8a3o by Molmil
Structure of human Fy-4
Descriptor: Quinone oxidoreductase-like protein 1
Authors:Schuhmacher, J.S, Zerial, M.
Deposit date:2022-06-08
Release date:2022-06-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of mRNA binding by the human FERRY Rab5 effector complex.
Mol.Cell, 83, 2023
8CV1
DownloadVisualize
BU of 8cv1 by Molmil
ACP1-KS-AT domains of mycobacterial Pks13
Descriptor: Polyketide synthase PKS13, UNKNOWN LIGAND
Authors:Kim, S.K, Dickinson, M.S, Finer-Moore, J.S, Rosenberg, O.S, Stroud, R.M.
Deposit date:2022-05-17
Release date:2023-02-15
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13.
Nat.Struct.Mol.Biol., 30, 2023
8A3P
DownloadVisualize
BU of 8a3p by Molmil
Structure of human Fy-5.
Descriptor: Glutamine amidotransferase-like class 1 domain-containing protein 1
Authors:Schuhmacher, J.S, Zerial, M.
Deposit date:2022-06-08
Release date:2022-06-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of mRNA binding by the human FERRY Rab5 effector complex.
Mol.Cell, 83, 2023
7QP6
DownloadVisualize
BU of 7qp6 by Molmil
Structure of the human 48S initiation complex in open state (h48S AUG open)
Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Yi, S.-H, Petrychenko, V, Schliep, J.E, Goyal, A, Linden, A, Chari, A, Urlaub, H, Stark, H, Rodnina, M.V, Adio, S, Fischer, N.
Deposit date:2022-01-03
Release date:2022-05-11
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Conformational rearrangements upon start codon recognition in human 48S translation initiation complex.
Nucleic Acids Res., 50, 2022

238582

건을2025-07-09부터공개중

PDB statisticsPDBj update infoContact PDBjnumon