PDB: 45118 resultsInfo pagesStatus searchChemie searchBIRD

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4PGX	Structure of human DNA polymerase beta complexed with G in the template base paired with incoming non-hydrolyzable TTP and MANGANESE Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... Authors: Koag, M.C, Lee, S. Deposit date: 2014-05-03 Release date: 2014-09-24 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.077 Å) Cite: The spontaneous replication error and the mismatch discrimination mechanisms of human DNA polymerase beta. Nucleic Acids Res., 42, 2015
4KHW	Ternary complex of RB69 mutant L415F with ribonucleotide at -2 position Descriptor: CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*C)-3'), DNA polymerase, ... Authors: Clausen, A.R, Pedersen, L.C. Deposit date: 2013-05-01 Release date: 2013-10-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.371 Å) Cite: Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
4KAJ	X-Ray Structure of the complex of Haloalkane dehalogenase HaloTag7 with HALTS, Northeast Structural Genomics Consortium (NESG) Target OR151 Descriptor: 1,2-ETHANEDIOL, GLYCEROL, MANGANESE (II) ION, ... Authors: Kuzin, A, Lew, S, Neklesa, T.K, Noblin, D, Seetharaman, J, Maglaqui, M, Xiao, R, Kohan, E, Wang, H, Everett, J.K, Acton, T.B, Kornhaber, G, Montelione, G.T, Crews, C.M, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG) Deposit date: 2013-04-22 Release date: 2013-06-05 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.948 Å) Cite: Northeast Structural Genomics Consortium Target OR151 To be Published
4PGQ	Structure of human DNA polymerase beta complexed with G in the template base paired with incoming non-hydrolyzable TTP Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... Authors: Koag, M.C, Lee, S. Deposit date: 2014-05-02 Release date: 2014-10-01 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The spontaneous replication error and the mismatch discrimination mechanisms of human DNA polymerase beta. Nucleic Acids Res., 42, 2015
4PHP	Structure of human DNA polymerase beta complexed with T in the template base paired with incoming non-hydrolyzable GTP and MANGANESE Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*CP*CP*GP*AP*CP*TP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), ... Authors: Koag, M.C, Lee, S. Deposit date: 2014-05-06 Release date: 2015-05-06 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: The spontaneous base substitution mechanisms of human DNA polymerase beta To Be Published
4PVR	Crystal structure of partially-cleaved human l-asparaginase protein in complex with l-aspartate Descriptor: ASPARTIC ACID, Isoaspartyl peptidase/L-asparaginase, SODIUM ION Authors: Nomme, J, Lavie, A. Deposit date: 2014-03-18 Release date: 2014-03-26 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structures of apo and product-bound human L-asparaginase: insights into the mechanism of autoproteolysis and substrate hydrolysis. Biochemistry, 51, 2012
4PYQ	Humanized rat apo-COMT in complex with a ureido-benzamidine Descriptor: 4-({[3-(aminomethyl)phenyl]carbamoyl}amino)benzenecarboximidamide, ACETATE ION, CHLORIDE ION, ... Authors: Ehler, A, Benz, J, Schlatter, D, Rudolph, M.G. Deposit date: 2014-03-27 Release date: 2014-06-11 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.39 Å) Cite: Mapping the conformational space accessible to catechol-O-methyltransferase. Acta Crystallogr.,Sect.D, 70, 2014
4Q3E	PylD cocrystallized with L-Ornithine-Nd-D-lysine and NAD+ Descriptor: 1,2-ETHANEDIOL, GLYCEROL, MAGNESIUM ION, ... Authors: Quitterer, F, Beck, P, Bacher, A, Groll, M. Deposit date: 2014-04-11 Release date: 2014-04-23 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: The Formation of Pyrroline and Tetrahydropyridine Rings in Amino Acids Catalyzed by Pyrrolysine Synthase (PylD). Angew.Chem.Int.Ed.Engl., 53, 2014
4KVJ	Crystal structure of Oryza sativa fatty acid alpha-dioxygenase with hydrogen peroxide Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, CALCIUM ION, CHLORIDE ION, ... Authors: Zhu, G, Koszelak-Rosenblum, M, Malkowski, M.G. Deposit date: 2013-05-22 Release date: 2013-08-21 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.12 Å) Cite: Crystal structures of alpha-dioxygenase from Oryza sativa: Insights into substrate binding and activation by hydrogen peroxide. Protein Sci., 22, 2013
4PVS	Crystal structure of fully-cleaved human l-asparaginase protein in complex with l-aspartate Descriptor: ASPARTIC ACID, Isoaspartyl peptidase/L-asparaginase, SODIUM ION Authors: Nomme, J, Lavie, A. Deposit date: 2014-03-18 Release date: 2014-03-26 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.84 Å) Cite: Structures of apo and product-bound human L-asparaginase: insights into the mechanism of autoproteolysis and substrate hydrolysis. Biochemistry, 51, 2012
4PXL	Structure of Zm ALDH2-3 (RF2C) in complex with NAD Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Cytosolic aldehyde dehydrogenase RF2C, ... Authors: Morera, S, Vigouroux, A, Kopecny, D. Deposit date: 2014-03-24 Release date: 2015-03-18 Last modified: 2015-05-20 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Role and structural characterization of plant aldehyde dehydrogenases from family 2 and family 7. Biochem.J., 468, 2015
1WZO	Crystal Structure of the HpcE from Thermus Thermophilus HB8 Descriptor: GLYCEROL, HpcE, SODIUM ION, ... Authors: Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-03-08 Release date: 2006-02-21 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal Structure of the HpcE from Thermus Thermophilus HB8 To be Published
4L3F	Crystal structure of Internalin K (InlK) from Listeria monocytogenes Descriptor: Internalin K, NICKEL (II) ION, SODIUM ION Authors: Neves, D. Deposit date: 2013-06-05 Release date: 2013-08-28 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Structure of Internalin InlK from the Human Pathogen Listeria monocytogenes. J.Mol.Biol., 425, 2013
4KYW	Restriction endonuclease DPNI in complex with two DNA molecules Descriptor: 5'-(*DC*DTP*DGP*DGP*6MAP*DTP*DCP*DCP*DAP*DG)-3', CALCIUM ION, SODIUM ION, ... Authors: Mierzejewska, K, Siwek, W, Czapinska, H, Skowronek, K, Bujnicki, J.M, Bochtler, M. Deposit date: 2013-05-29 Release date: 2014-06-04 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structural basis of the methylation specificity of R.DpnI. Nucleic Acids Res., 42, 2014
4KUF	Crystal structure of the catalytic domain of botulinum neurotoxin BoNT/A C134 mutant with MTSEA modified Cys-165 causing stretch disorder Descriptor: (2S)-2-hydroxybutanedioic acid, 1,2-ETHANEDIOL, Botulinum neurotoxin A light chain, ... Authors: Stura, E.A, Vera, L, Ptchelkine, D, Bakirci, H, Garcia, S, Dive, V. Deposit date: 2013-05-22 Release date: 2014-07-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.697 Å) Cite: Covalent modification of the active site cysteine stresses Clostridium botulinum neurotoxin A To be Published
4QDM	Crystal structure of N-terminal mutant (V1L) of an alkali thermostable GH10 xylanase from Bacillus sp. NG-27 Descriptor: Alkaline thermostable endoxylanase, GLYCEROL, MAGNESIUM ION, ... Authors: Mahanta, P, Bhardwaj, A, Reddy, V.S, Ramakumar, S. Deposit date: 2014-05-14 Release date: 2015-05-20 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.964 Å) Cite: Structural insights into N-terminal to C-terminal interactions and implications for thermostability of a (beta/alpha)8-triosephosphate isomerase barrel enzyme Febs J., 282, 2015
8EVY	DdlB from Pseudomonas aeruginosa PAO1 in complex with ATP and D-ala-D-ala Descriptor: ADENOSINE-5'-TRIPHOSPHATE, D-ALANINE, D-alanine--D-alanine ligase B, ... Authors: Pederick, J.L, Woolman, J.C, Bruning, J.B. Deposit date: 2022-10-21 Release date: 2023-08-30 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Comparative functional and structural analysis of Pseudomonas aeruginosa d-alanine-d-alanine ligase isoforms as prospective antibiotic targets. Febs J., 290, 2023
4M9B	Crystal structure of Apo Ara h 8 Descriptor: Ara h 8 allergen, SODIUM ION Authors: Offermann, L.R, Hurlburt, B.K, Majorek, K.A, McBride, J.K, Maleki, S.J, Chruszcz, M. Deposit date: 2013-08-14 Release date: 2013-11-27 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure and Function of the Peanut Panallergen Ara h 8. J.Biol.Chem., 288, 2013
7OLB	Crystal structure of Pab-AGOG, an 8-oxoguanine DNA glycosylase from Pyrococcus abyssi Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, CITRIC ACID, ... Authors: Coste, F, Goffinont, S, Flament, D, Castaing, B. Deposit date: 2021-05-19 Release date: 2022-06-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Structural and functional determinants of the archaeal 8-oxoguanine-DNA glycosylase AGOG for DNA damage recognition and processing. Nucleic Acids Res., 50, 2022
4PVK	Phl p 4 I153V N158H variant, a glucose oxidase Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, MALONATE ION, ... Authors: Zafred, D, Teufelberger, A, Keller, W, Macheroux, P. Deposit date: 2014-03-17 Release date: 2014-04-02 Last modified: 2015-09-02 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction. Febs J., 282, 2015
7OYL	Phosphoglucose isomerase of Aspergillus fumigatus in complexed with Glucose-6-phosphate Descriptor: 6-O-phosphono-beta-D-glucopyranose, CHLORIDE ION, GLYCEROL, ... Authors: Raimi, O.G, Yan, K, Fang, W, van Aalten, D.M.F. Deposit date: 2021-06-24 Release date: 2022-07-13 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Phosphoglucose Isomerase Is Important for Aspergillus fumigatus Cell Wall Biogenesis. Mbio, 13, 2022
4Q98	Crystal structure of a fimbrilin (fimA) from Porphyromonas gingivalis W83 at 1.30 A resolution (PSI Community Target, Nakayama) Descriptor: Major fimbrial subunit protein, SODIUM ION Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2014-04-29 Release date: 2014-06-04 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.3 Å) Cite: A Distinct Type of Pilus from the Human Microbiome. Cell, 165, 2016
4QCE	Crystal structure of recombinant alkali thermostable GH10 xylanase from Bacillus sp. NG-27 Descriptor: Alkaline thermostable endoxylanase, MAGNESIUM ION, SODIUM ION Authors: Mahanta, P, Bhardwaj, A, Reddy, V.S, Ramakumar, S. Deposit date: 2014-05-11 Release date: 2015-05-20 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Structural insights into N-terminal to C-terminal interactions and implications for thermostability of a (beta/alpha)8-triosephosphate isomerase barrel enzyme Febs J., 282, 2015
4PVH	Phl p 4 N158H variant, a glucose dehydrogenase Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, MALONATE ION, Pollen allergen Phl p 4.0202, ... Authors: Zafred, D, Teufelberger, A, Keller, W, Macheroux, P. Deposit date: 2014-03-17 Release date: 2014-04-02 Last modified: 2015-09-02 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Rationally engineered flavin-dependent oxidase reveals steric control of dioxygen reduction. Febs J., 282, 2015
4PVQ	Crystal structure of sulfate-bound human l-asparaginase protein Descriptor: IODIDE ION, Isoaspartyl peptidase/L-asparaginase, SODIUM ION, ... Authors: Nomme, J, Lavie, A. Deposit date: 2014-03-18 Release date: 2014-03-26 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.13 Å) Cite: Structures of apo and product-bound human L-asparaginase: insights into the mechanism of autoproteolysis and substrate hydrolysis. Biochemistry, 51, 2012

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