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4OIR
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BU of 4oir by Molmil
Crystal structure of Thermus thermophilus RNA polymerase transcription initiation complex soaked with GE23077 and rifamycin SV
Descriptor: (2Z)-2-methylbut-2-enoic acid, 5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3', 5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G)-3', ...
Authors:Zhang, Y, Ebright, R.H, Arnold, E.
Deposit date:2014-01-20
Release date:2014-05-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.105 Å)
Cite:GE23077 binds to the RNA polymerase 'i' and 'i+1' sites and prevents the binding of initiating nucleotides.
Elife, 3, 2014
2AGI
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BU of 2agi by Molmil
The leupeptin-trypsin covalent complex at 1.14 A resolution
Descriptor: CALCIUM ION, SULFATE ION, beta-trypsin, ...
Authors:Radisky, E.S, Lee, J.M, Lu, C.J, Koshland Jr, D.E.
Deposit date:2005-07-26
Release date:2006-05-16
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Insights into the serine protease mechanism from atomic resolution structures of trypsin reaction intermediates
Proc.Natl.Acad.Sci.USA, 103, 2006
4OIN
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BU of 4oin by Molmil
Crystal structure of Thermus thermophilus transcription initiation complex soaked with GE23077
Descriptor: (2Z)-2-methylbut-2-enoic acid, 5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*G)-3', 5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G)-3', ...
Authors:Zhang, Y, Ebright, R.H, Arnold, E.
Deposit date:2014-01-20
Release date:2014-05-07
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:GE23077 binds to the RNA polymerase 'i' and 'i+1' sites and prevents the binding of initiating nucleotides.
Elife, 3, 2014
7FH5
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BU of 7fh5 by Molmil
Structure of AdaV
Descriptor: AdaV, CHLORIDE ION, FE (III) ION
Authors:Zhang, Z.Y, Chen, W.Q, Zhai, G.Q, Zhang, M.
Deposit date:2021-07-29
Release date:2022-08-03
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Insight into the Catalytic Mechanism of Non-Heme Iron Halogenase AdaV in 2'-Chloropentostatin Biosynthesis
Acs Catalysis, 12, 2022
2FO5
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BU of 2fo5 by Molmil
Crystal structure of recombinant barley cysteine endoprotease B isoform 2 (EP-B2) in complex with leupeptin
Descriptor: ACE-LEU-LEU-argininal (leupeptin), Cysteine proteinase EP-B 2, SULFATE ION
Authors:Bethune, M.T, Strop, P, Brunger, A.T, Khosla, C.
Deposit date:2006-01-12
Release date:2006-07-18
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Heterologous Expression, Purification, Refolding, and Structural-Functional Characterization of EP-B2, a Self-Activating Barley Cysteine Endoprotease.
Chem.Biol., 13, 2006
3VFK
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BU of 3vfk by Molmil
The structure of monodechloro-teicoplanin in complex with its ligand, using ubiquitin as a ligand carrier
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-amino-2-deoxy-beta-D-glucopyranose, 8-METHYLNONANOIC ACID, ...
Authors:Economou, N.J, Weeks, S.D, Grasty, K.C, Loll, P.J.
Deposit date:2012-01-09
Release date:2013-01-09
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the complex between teicoplanin and a bacterial cell-wall peptide: use of a carrier-protein approach.
Acta Crystallogr.,Sect.D, 69, 2013
7XPR
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BU of 7xpr by Molmil
Crystal structrue of SeMet-MtdL:GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Transglycosylse
Authors:Li, F.D, He, C.
Deposit date:2022-05-05
Release date:2023-03-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of the NDP-pyranose mutase belonging to glycosyltransferase family 75 reveal residues important for Mn 2+ coordination and substrate binding.
J.Biol.Chem., 299, 2023
7XPT
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BU of 7xpt by Molmil
Crystal structrue of MtdL:GDP:Mn soaked with GDP-Glc
Descriptor: GDP-ALPHA-D-GLUCOSE, MANGANESE (II) ION, Transglycosylse
Authors:Li, F.D, He, C.
Deposit date:2022-05-05
Release date:2023-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of the NDP-pyranose mutase belonging to glycosyltransferase family 75 reveal residues important for Mn 2+ coordination and substrate binding.
J.Biol.Chem., 299, 2023
7XPS
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BU of 7xps by Molmil
Crystal structrue of MtdL:GDP:Mn
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MANGANESE (II) ION, Transglycosylse
Authors:Li, F.D, He, C.
Deposit date:2022-05-05
Release date:2023-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of the NDP-pyranose mutase belonging to glycosyltransferase family 75 reveal residues important for Mn 2+ coordination and substrate binding.
J.Biol.Chem., 299, 2023
7XPU
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BU of 7xpu by Molmil
crystal structure of MtdL-S228A-His soaked GDP-Fucp and Mn
Descriptor: GLYCEROL, GUANOSINE-5'-DIPHOSPHATE-BETA-L-FUCOPYRANOSE, MANGANESE (II) ION, ...
Authors:Li, F.D, He, C.
Deposit date:2022-05-05
Release date:2023-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of the NDP-pyranose mutase belonging to glycosyltransferase family 75 reveal residues important for Mn 2+ coordination and substrate binding.
J.Biol.Chem., 299, 2023
6IIX
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BU of 6iix by Molmil
The crystal structure of acyltransferase mutant, orf11*-W163A, in complex with octanoyl-CoA
Descriptor: OCTANOYL-COENZYME A, SULFATE ION, acyltransferase
Authors:Li, T.L, Huang, C.M.
Deposit date:2018-10-08
Release date:2019-10-09
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Teicoplanin Reprogrammed with the N-Acyl-Glucosamine Pharmacophore at the Penultimate Residue of Aglycone Acquires Broad-Spectrum Antimicrobial Activities Effectively Killing Gram-Positive and -Negative Pathogens.
Acs Infect Dis., 5, 2019
6J0U
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BU of 6j0u by Molmil
Crystal Structure of the acyltransferase domain from the third module of the ansamitocin polyketide synthase
Descriptor: PHOSPHATE ION, Type 1 modular polyketide synthase
Authors:Zhang, F, Zheng, J.
Deposit date:2018-12-26
Release date:2019-12-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural and Biochemical Insight into the Recruitment of Acyl Carrier Protein-Linked Extender Units in Ansamitocin Biosynthesis.
Chembiochem, 21, 2020
4AUC
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BU of 4auc by Molmil
Bovine chymosin in complex with Pepstatin A
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, CHYMOSIN, ...
Authors:Langholm Jensen, J, Navarro Poulsen, J.C, Jacobsen, J, van den Brink, J.M, Qvist, K.B, Larsen, S.
Deposit date:2012-05-16
Release date:2013-05-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Structure of Bovine Chymosin in Complex with Pepstatin A
To be Published
6K31
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BU of 6k31 by Molmil
Crystal structure of pyrophosphate-dependent phosphoenolpyruvate carboxykinase (PPi-PEPCK)
Descriptor: AiPEPCK, COBALT (II) ION
Authors:Chiba, Y, Miyakawa, T, Tanokura, M.
Deposit date:2019-05-15
Release date:2019-11-06
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural comparisons of phosphoenolpyruvate carboxykinases reveal the evolutionary trajectories of these phosphodiester energy conversion enzymes.
J.Biol.Chem., 294, 2019
4DJL
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BU of 4djl by Molmil
Carboxypeptidase T with N-sulfamoyl-L-phenylalanine
Descriptor: CALCIUM ION, Carboxypeptidase T, GLYCEROL, ...
Authors:Kuznetsov, S.A, Timofeev, V.I, Akparov, V.K, Kuranova, I.P.
Deposit date:2012-02-02
Release date:2013-02-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Carboxypeptidase T with N-sulfamoyl-L-phenylalanine
TO BE PUBLISHED
7Q87
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BU of 7q87 by Molmil
Carboxypeptidase T with (S)-3-phenyllactic acid
Descriptor: ALPHA-HYDROXY-BETA-PHENYL-PROPIONIC ACID, CALCIUM ION, Carboxypeptidase T, ...
Authors:Timofeev, V.I, Akparov, V.K, Shevtsov, M.B, Kuranova, I.P.
Deposit date:2021-11-10
Release date:2022-01-26
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Carboxypeptidase T with (S)-3-phenyllactic acid
To Be Published
2MR8
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BU of 2mr8 by Molmil
holo structure of the Peptidyl Carrier Protein Domain 7 of the teicoplanin producing Non-ribosomal peptide synthetase
Descriptor: Non-ribosomal peptide synthetase
Authors:Haslinger, K, Maximowitsch, E, Redfield, C, Cryle, M.J.
Deposit date:2014-07-02
Release date:2015-01-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the terminal PCP domain of the non-ribosomal peptide synthetase in teicoplanin biosynthesis.
Proteins, 83, 2015
7PIB
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BU of 7pib by Molmil
70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Xue, L, Lenz, S, Rappsilber, J, Mahamid, J.
Deposit date:2021-08-19
Release date:2022-05-25
Last modified:2022-10-19
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Visualizing translation dynamics at atomic detail inside a bacterial cell.
Nature, 610, 2022
2MR7
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BU of 2mr7 by Molmil
apo structure of the Peptidyl Carrier Protein Domain 7 of the teicoplanin producing Non-ribosomal peptide synthetase
Descriptor: Non-ribosomal peptide synthetase
Authors:Haslinger, K, Maximowitsch, E, Redfield, C, Cryle, M.J.
Deposit date:2014-07-02
Release date:2015-01-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the terminal PCP domain of the non-ribosomal peptide synthetase in teicoplanin biosynthesis.
Proteins, 83, 2015
2MPX
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BU of 2mpx by Molmil
Three-dimensional structure of CAP-GLY DOMAIN ASSEMBLED ON MICROTUBULES DETERMINED BY MAS NMR SPECTROSCOPY
Descriptor: Dynactin subunit 1
Authors:Yan, S, Hou, G, Zhang, H, Polenova, T, Williams, J.C.
Deposit date:2014-06-08
Release date:2015-11-11
Last modified:2024-05-15
Method:SOLID-STATE NMR
Cite:THREE-DIMENSIONAL STRUCTURE of CAP-GLY DOMAIN ASSEMBLED ON MICROTUBULES DETERMINED BY MAS NMR SPECTROSCOPY
To be Published
2NQA
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BU of 2nqa by Molmil
Catalytic Domain of Human Calpain 8
Descriptor: CALCIUM ION, Calpain-8, Leupeptin Inhibitor
Authors:Davis, T.L, Paramanathan, R, Butler-Cole, C, Finerty Jr, P.J, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2006-10-30
Release date:2006-11-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of Human Calpain 8
To be Published
2P0R
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BU of 2p0r by Molmil
Structure of Human Calpain 9 in complex with Leupeptin
Descriptor: CALCIUM ION, Calpain-9, leupeptin
Authors:Davis, T.L, Paramanathan, R, Walker, J.R, Butler-Cole, C, Finerty Jr, P.J, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2007-03-01
Release date:2007-03-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures of Human Minicalpains bound to Inhibitors
To be Published
2OM5
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BU of 2om5 by Molmil
N-Terminal Fragment of Human TAX1
Descriptor: Contactin 2
Authors:Moertl, M, Sonderegger, P, Diederichs, K, Welte, W.
Deposit date:2007-01-20
Release date:2007-11-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:The crystal structure of the ligand-binding module of human TAG-1 suggests a new mode of homophilic interaction
Protein Sci., 16, 2007
4UWX
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BU of 4uwx by Molmil
Structure of liprin-alpha3 in complex with mDia1 Diaphanous- inhibitory domain
Descriptor: LIPRIN-ALPHA-3, NICKEL (II) ION, PROTEIN DIAPHANOUS HOMOLOG 1, ...
Authors:Brenig, J, de Boor, S, Knyphausen, P, Kuhlmann, N, Wroblowski, S, Baldus, L, Scislowski, L, Artz, O, Trauschies, P, Baumann, U, Neundorf, I, Lammers, M.
Deposit date:2014-08-15
Release date:2015-05-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and Biochemical Basis for the Inhibitory Effect of Liprin-Alpha3 on Mouse Diaphanous 1 (Mdia1) Function.
J.Biol.Chem., 290, 2015
5HVK
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BU of 5hvk by Molmil
Crystal structure of LIMK1 mutant D460N in complex with full-length cofilin-1
Descriptor: Cofilin-1, LIM domain kinase 1, MAGNESIUM ION, ...
Authors:Hamill, S, Boggon, T.J.
Deposit date:2016-01-28
Release date:2016-05-04
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural Basis for Noncanonical Substrate Recognition of Cofilin/ADF Proteins by LIM Kinases.
Mol.Cell, 62, 2016

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