PDB: 92137 resultsInfo pagesStatus searchChemie searchBIRD

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1UIU	Crystal structures of the liganded and unliganded nickel binding protein NikA from Escherichia coli (Nickel unliganded form) Descriptor: Nickel-binding periplasmic protein Authors: Heddle, J, Scott, D.J, Unzai, S, Park, S.-Y, Tame, J.R.H. Deposit date: 2003-07-22 Release date: 2004-02-03 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal structures of the liganded and unliganded nickel-binding protein NikA from Escherichia coli J.Biol.Chem., 278, 2003
1UIV	Crystal structures of the liganded and unliganded nickel binding protein NikA from Escherichia coli (Nickel liganded form) Descriptor: NICKEL (II) ION, Nickel-binding periplasmic protein Authors: Heddle, J, Scott, D.J, Unzai, S, Park, S.-Y, Tame, J.R.H. Deposit date: 2003-07-22 Release date: 2004-02-03 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal structures of the liganded and unliganded nickel-binding protein NikA from Escherichia coli J.Biol.Chem., 278, 2003
5ZBU	Crystal Structure of PA-TM-RING E3 ligase RNF13 RING domain in complex with E2~Ub Descriptor: E3 ubiquitin-protein ligase RNF13, Ubiquitin, Ubiquitin-conjugating enzyme E2 D2, ... Authors: Datta, A.B, Sarkar, S. Deposit date: 2018-02-12 Release date: 2019-02-27 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Crystal Structure of PA-TM-RING E3 ligase RNF13 RING domain in complex with E2~Ub To Be Published
1R0C	Products in the T State of Aspartate Transcarbamylase: Crystal Structure of the Phosphate and N-carbamyl-L-aspartate Ligated Enzyme Descriptor: Aspartate carbamoyltransferase catalytic chain, Aspartate carbamoyltransferase regulatory chain, N-CARBAMOYL-L-ASPARTATE, ... Authors: Huang, J, Lipscomb, W.N. Deposit date: 2003-09-19 Release date: 2004-06-08 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.37 Å) Cite: Products in the T-State of Aspartate Transcarbamylase: Crystal Structure of the Phosphate and N-Carbamyl-l-aspartate Ligated Enzyme Biochemistry, 43, 2004
2LFE	Solution NMR structure of N-terminal domain of human E3 ubiquitin-protein ligase HECW2, Northeast structural genomics consortium (NESG) target ht6306A Descriptor: E3 ubiquitin-protein ligase HECW2 Authors: Lemak, A, Yee, A, Houliston, S, Garcia, M, Chitayat, S, Dhe-Paganon, S, Montelione, G.T, Arrowsmith, C, Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC) Deposit date: 2011-06-29 Release date: 2011-07-27 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NMR solution structure of N-terminal domain of E3 ligase HECW2 To be Published
2WQW	DOUBLE-DISULFIDE CROSS-LINKED CRYSTAL DIMER of the Listeria monocytogenes InlB internalin domain Descriptor: DI(HYDROXYETHYL)ETHER, INTERNALIN B Authors: Ferraris, D.M, Heinz, D.W, Niemann, H.H. Deposit date: 2009-08-27 Release date: 2009-11-10 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.24 Å) Cite: Ligand-Mediated Dimerization of the met Receptor Tyrosine Kinase by the Bacterial Invasion Protein Inlb. J.Mol.Biol., 395, 2010
4E1G	X-ray crystal structure of alpha-linolenic acid bound to the cyclooxygenase channel of cyclooxygenase-2 Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Vecchio, A.J, Malkowski, M.G. Deposit date: 2012-03-06 Release date: 2012-04-25 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Investigating Substrate Promiscuity in Cyclooxygenase-2: THE ROLE OF ARG-120 AND RESIDUES LINING THE HYDROPHOBIC GROOVE. J.Biol.Chem., 287, 2012
5IJ6	Crystal structure of Enterococcus faecalis lipoate-protein ligase A (lplA-1) in complex with lipoic acid Descriptor: CHLORIDE ION, LIPOIC ACID, Lipoate--protein ligase, ... Authors: Hughes, S.J, Lyle, A.G, Song, J.H, Antoshchenko, T, Park, H. Deposit date: 2016-03-01 Release date: 2017-03-15 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of Enterococcus faecalis lipoate-protein ligase A (lplA-1) in complex with lipoic acid to be published
2AN6	Protein-peptide complex Descriptor: Ubiquitin ligase SIAH1A, ZINC ION, peptide from Phyllopod Authors: House, C.M, Hancock, N.C, Moller, A, Cromer, B.A, Fedorov, V, Bowtell, D.D.L, Parker, M.W, Polekhina, G. Deposit date: 2005-08-11 Release date: 2006-05-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Elucidation of the substrate binding site of Siah ubiquitin ligase Structure, 14, 2006
4GD0	tRNA-guanine transglycosylase Y106F, C158V mutant Descriptor: GLYCEROL, Queuine tRNA-ribosyltransferase, ZINC ION Authors: Schmidt, I, Tidten-Luksch, N, Heine, A, Reuter, K, Klebe, G. Deposit date: 2012-07-31 Release date: 2012-08-29 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.29 Å) Cite: Investigation of Specificity Determinants in Bacterial tRNA-Guanine Transglycosylase Reveals Queuine, the Substrate of Its Eucaryotic Counterpart, as Inhibitor. Plos One, 8, 2013
3LRQ	Crystal structure of the U-box domain of human ubiquitin-protein ligase (E3), NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR4604D. Descriptor: E3 ubiquitin-protein ligase TRIM37, ZINC ION Authors: Kuzin, A, Chen, Y, Seetharaman, J, Mao, M, Xiao, R, Ciccosanti, C, Shastry, R, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG) Deposit date: 2010-02-11 Release date: 2010-03-23 Last modified: 2019-07-17 Method: X-RAY DIFFRACTION (2.292 Å) Cite: E3 UBIQUITIN-PROTEIN LIGASE RING DOMAIN FROM HUMAN TRIPARTITE MOTIF-CONTAINING PROTEIN 37 (TRIM37), NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR4604D. To be Published
3LP8	Crystal structure of phosphoribosylamine-glycine ligase from Ehrlichia chaffeensis Descriptor: PHOSPHATE ION, Phosphoribosylamine-glycine ligase, UNKNOWN ATOM OR ION Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2010-02-04 Release date: 2010-02-23 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal structure of phosphoribosylamine-glycine ligase from Ehrlichia chaffeensis To be Published
6XXW	Structure of beta-D-Glucuronidase for Dictyoglomus thermophilum. Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-glucuronidase, ... Authors: Lafite, P, Daniellou, R. Deposit date: 2020-01-28 Release date: 2020-07-15 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.851 Å) Cite: Thioglycoligation of aromatic thiols using a natural glucuronide donor. Org.Biomol.Chem., 18, 2020
2WQU	Internalin domain of Listeria monocytogenes InlB: triclinic crystal form Descriptor: GLYCEROL, INTERNALIN B, SULFATE ION Authors: Niemann, H.H, Heinz, D.W. Deposit date: 2009-08-27 Release date: 2009-11-10 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Ligand-Mediated Dimerization of the met Receptor Tyrosine Kinase by the Bacterial Invasion Protein Inlb. J.Mol.Biol., 395, 2010
1X4S	Solution structure of zinc finger HIT domain in protein FON Descriptor: ZINC ION, Zinc finger HIT domain containing protein 2 Authors: He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-05-14 Release date: 2005-11-14 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the zinc finger HIT domain in protein FON Protein Sci., 16, 2007
3Q12	Pantoate-beta-alanine ligase from Yersinia pestis in complex with pantoate. Descriptor: CHLORIDE ION, PANTOATE, Pantoate--beta-alanine ligase Authors: Osipiuk, J, Maltseva, N, Kwon, K, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2010-12-16 Release date: 2011-02-02 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.58 Å) Cite: Pantoate-beta-alanine ligase from Yersinia pestis. To be Published
6BLJ	Crystal structure of cytoplasmic Serine-tRNA ligase from Naegleria fowleri in complex with AMP Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, Serine-tRNA ligase Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2017-11-10 Release date: 2017-12-20 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of cytoplasmic Serine-tRNA ligase from Neisseria fowlerii in complex with AMP TO BE PUBLISHED
1UKZ	SUBSTRATE SPECIFICITY AND ASSEMBLY OF CATALYTIC CENTER DERIVED FROM TWO STRUCTURES OF LIGATED URIDYLATE KINASE Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, URIDYLATE KINASE Authors: Mueller-Dieckmann, H.-J, Schulz, G.E. Deposit date: 1994-07-13 Release date: 1995-01-26 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Substrate specificity and assembly of the catalytic center derived from two structures of ligated uridylate kinase. J.Mol.Biol., 246, 1995
4CI2	Structure of the DDB1-CRBN E3 ubiquitin ligase bound to lenalidomide Descriptor: DNA DAMAGE-BINDING PROTEIN 1, PROTEIN CEREBLON, S-Lenalidomide, ... Authors: Fischer, E.S, Boehm, K, Thoma, N.H. Deposit date: 2013-12-05 Release date: 2014-07-16 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Structure of the Ddb1-Crbn E3 Ubiquitin Ligase in Complex with Thalidomide. Nature, 512, 2014
1UKY	SUBSTRATE SPECIFICITY AND ASSEMBLY OF CATALYTIC CENTER DERIVED FROM TWO STRUCTURES OF LIGATED URIDYLATE KINASE Descriptor: ADENOSINE-5'-DIPHOSPHATE, URIDYLATE KINASE Authors: Mueller-Dieckmann, H.-J, Schulz, G.E. Deposit date: 1994-07-13 Release date: 1995-01-26 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2.13 Å) Cite: Substrate specificity and assembly of the catalytic center derived from two structures of ligated uridylate kinase. J.Mol.Biol., 246, 1995
5ICL	Crystal structure of Enterococcus faecalis lipoate-protein ligase A (lplA-2) in complex with lipoyl-AMP Descriptor: 5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE, Lipoate--protein ligase Authors: Hughes, S.J, Antoshchenko, T, Song, J.H, Park, H.W. Deposit date: 2016-02-23 Release date: 2017-03-15 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of Enterococcus faecalis lipoate-protein ligase A (lplA-2) in complex with lipoyl-AMP To Be Published
1YIU	Itch E3 ubiquitin ligase WW3 domain Descriptor: Itchy E3 ubiquitin protein ligase Authors: Shaw, A.Z, Martin-Malpartida, P, Morales, B, Yraola, F, Royo, M, Macias, M.J. Deposit date: 2005-01-13 Release date: 2005-08-02 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Phosphorylation of either Ser16 or Thr30 does not disrupt the structure of the Itch E3 ubiquitin ligase third WW domain Proteins, 60, 2005
4CI3	Structure of the DDB1-CRBN E3 ubiquitin ligase bound to Pomalidomide Descriptor: DNA DAMAGE-BINDING PROTEIN 1, PROTEIN CEREBLON, S-Pomalidomide, ... Authors: Fischer, E.S, Boehm, K, Thoma, N.H. Deposit date: 2013-12-05 Release date: 2014-07-16 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structure of the Ddb1-Crbn E3 Ubiquitin Ligase in Complex with Thalidomide. Nature, 512, 2014
3MVN	Crystal structure of a domain from a putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminopimelate ligase from Haemophilus ducreyi 35000HP Descriptor: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminopimelate ligase Authors: Filippova, E.V, Minasov, G, Shuvalova, L, Kiryukhina, O, Clancy, S, Joachimiak, A, Anderson, F.W, Midwest Center for Structural Genomics (MCSG) Deposit date: 2010-05-04 Release date: 2010-06-16 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of a domain from a putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminopimelate ligase from Haemophilus ducreyi 35000HP To be Published
6BRQ	Crystal structure of rice ASK1-D3 ubiquitin ligase complex crystal form 3 Descriptor: F-box/LRR-repeat MAX2 homolog, SKP1-like protein 1A Authors: Shabek, N, Zheng, N, Mao, H, Hinds, T.R, Ticchiarelli, F, Leyser, O. Deposit date: 2017-11-30 Release date: 2018-11-21 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.99 Å) Cite: Structural plasticity of D3-D14 ubiquitin ligase in strigolactone signalling. Nature, 563, 2018

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