PDB: 13252 resultsInfo pagesStatus searchChemie searchBIRD

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8ICG	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR) Descriptor: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)), ... Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1996-04-19 Release date: 1996-11-15 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
8ICC	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA (NO 5'-PHOSPHATE) Descriptor: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)), ... Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1996-04-19 Release date: 1996-11-15 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
8ICZ	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (1 MILLIMOLAR), MNCL2 (5 MILLIMOLAR), AND LITHIUM SULFATE (75 MILLIMOLAR) Descriptor: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)), ... Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1996-01-04 Release date: 1996-11-15 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
7K96	Human DNA polymerase beta ternary complex with templating cytosine and incoming deoxyguanosine diphosphate Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE, CALCIUM ION, ... Authors: Varela, F.A, Freudenthal, B.D. Deposit date: 2020-09-28 Release date: 2021-02-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Mechanism of Deoxyguanosine Diphosphate Insertion by Human DNA Polymerase beta. Biochemistry, 60, 2021
4DHX	ENY2:GANP complex Descriptor: 80 kDa MCM3-associated protein, Enhancer of yellow 2 transcription factor homolog Authors: Stewart, M, Jani, D. Deposit date: 2012-01-30 Release date: 2012-06-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Functional and structural characterization of the mammalian TREX-2 complex that links transcription with nuclear messenger RNA export. Nucleic Acids Res., 40, 2012
5VS1	Human DNA polymerase beta pre-catalytic 8-oxoG:dA extension complex with dTTP bound in non-planar conformation Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, DNA (5'-D(*CP*CP*GP*AP*CP*AP*(8OG)P*GP*CP*GP*CP*AP*TP*CP*AP*G)-3'), ... Authors: Reed, A.J, Suo, Z. Deposit date: 2017-05-11 Release date: 2017-07-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Time-Dependent Extension from an 8-Oxoguanine Lesion by Human DNA Polymerase Beta. J. Am. Chem. Soc., 139, 2017
5VRX	Human DNA polymerase beta pre-catalytic 8-oxoG:dC extension complex with dTTP bound in Watson-Crick conformation Descriptor: ACETATE ION, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... Authors: Reed, A.J, Suo, Z. Deposit date: 2017-05-11 Release date: 2017-07-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Time-Dependent Extension from an 8-Oxoguanine Lesion by Human DNA Polymerase Beta. J. Am. Chem. Soc., 139, 2017
5VS0	Human DNA polymerase beta 8-oxoG:dC extension with dTTP after 80 s Descriptor: CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*(8OG)P*GP*CP*GP*CP*AP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*TP*GP*CP*GP*CP*CP*T)-3'), ... Authors: Reed, A.J, Suo, Z. Deposit date: 2017-05-11 Release date: 2017-07-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Time-Dependent Extension from an 8-Oxoguanine Lesion by Human DNA Polymerase Beta. J. Am. Chem. Soc., 139, 2017
5VRZ	Human DNA polymerase beta 8-oxoG:dC extension with dTTP after 60 s Descriptor: CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*(8OG)P*GP*CP*GP*CP*AP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*TP*GP*CP*GP*CP*CP*T)-3'), ... Authors: Reed, A.J, Suo, Z. Deposit date: 2017-05-11 Release date: 2017-07-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Time-Dependent Extension from an 8-Oxoguanine Lesion by Human DNA Polymerase Beta. J. Am. Chem. Soc., 139, 2017
5L2X	Crystal structure of human PrimPol ternary complex Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(P*GP*GP*TP*AP*GP*CP*(DDG))-3'), ... Authors: Rechkoblit, O, Gupta, Y.K, Malik, R, Rajashankar, K.R, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K. Deposit date: 2016-08-02 Release date: 2016-11-23 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure and mechanism of human PrimPol, a DNA polymerase with primase activity. Sci Adv, 2, 2016
5VS2	Human DNA polymerase beta pre-catalytic 8-oxoG:dA extension complex with dTTP bound in Watson-Crick conformation Descriptor: CALCIUM ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*(8OG)P*GP*CP*GP*CP*AP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*TP*GP*CP*GP*CP*A)-3'), ... Authors: Reed, A.J, Suo, Z. Deposit date: 2017-05-11 Release date: 2017-07-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.33 Å) Cite: Time-Dependent Extension from an 8-Oxoguanine Lesion by Human DNA Polymerase Beta. J. Am. Chem. Soc., 139, 2017
5VRW	Human DNA polymerase beta pre-catalytic 8-oxoG:dC extension complex with dTTP bound in non-planar conformation Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, DNA (5'-D(*CP*CP*GP*AP*CP*AP*(8OG)P*GP*CP*GP*CP*AP*TP*CP*AP*G)-3'), ... Authors: Reed, A.J, Suo, Z. Deposit date: 2017-05-11 Release date: 2017-07-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.58 Å) Cite: Time-Dependent Extension from an 8-Oxoguanine Lesion by Human DNA Polymerase Beta. J. Am. Chem. Soc., 139, 2017
5VS4	Human DNA polymerase beta 8-oxoG:dA extension with dTTP after 120 s Descriptor: ACETATE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*(8OG)P*GP*CP*GP*CP*AP*TP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*AP*TP*GP*CP*GP*CP*AP*T)-3'), ... Authors: Reed, A.J, Suo, Z. Deposit date: 2017-05-11 Release date: 2017-07-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Time-Dependent Extension from an 8-Oxoguanine Lesion by Human DNA Polymerase Beta. J. Am. Chem. Soc., 139, 2017
4C31	Nup1:Sac3:Sus1 complex Descriptor: NUCLEAR MRNA EXPORT PROTEIN SAC3, NUCLEOPORIN NUP1, PROTEIN SUS1 Authors: Stewart, M, Jani, D. Deposit date: 2013-08-21 Release date: 2014-04-16 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural Basis for Binding the Trex2 Complex to Nuclear Pores, Gal1 Localisation and Mrna Export. Nucleic Acids Res., 42, 2014
5TBA	Postcatalytic ternary complex of Human DNA Polymerase Beta with Gapped DNA substrate, incorporated (-)3TC and PPi. Descriptor: 10-MER PRIMER, 16-MER TEMPLATE, 5-MER PHOSPHORYLATED DOWNSTREAM PRIMER, ... Authors: Vyas, R, Suo, Z. Deposit date: 2016-09-11 Release date: 2017-01-11 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.49 Å) Cite: Structural Insights into the Post-Chemistry Steps of Nucleotide Incorporation Catalyzed by a DNA Polymerase. J. Am. Chem. Soc., 139, 2017
8JVZ	Crystal structure of the circular-permutated protein mkaL2_v1_SH3 Descriptor: mkaL2_v1_SH3 Authors: Yagi, S, Tagami, S. Deposit date: 2023-06-28 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (1.892 Å) Cite: Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins To Be Published
8JVN	Crystal structure of the mk2h_deltaMILPYS peptide homodimer, DZBB form Descriptor: SULFATE ION, mk2h_deltaMILPYS Authors: Yagi, S, Tagami, S. Deposit date: 2023-06-28 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (1.404 Å) Cite: Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins To Be Published
8JVT	Crystal structure of the chimeric protein mkaL2_v1 Descriptor: mkaL2_v1 Authors: Yagi, S, Tagami, S. Deposit date: 2023-06-28 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (2.106 Å) Cite: Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins To Be Published
8JVY	Crystal structure of the chimeric protein tkoL2_v1_turn with shorten loop 1 Descriptor: tkoL2_v1_turn Authors: Yagi, S, Tagami, S. Deposit date: 2023-06-28 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (1.895 Å) Cite: Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins To Be Published
8JVS	Crystal structure of the chimeric protein tkoL2_v1 Descriptor: tkoL2_v1 Authors: Yagi, S, Tagami, S. Deposit date: 2023-06-28 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins To Be Published
8JVU	Crystal structure of the chimeric protein tkoL2_v1.2 Descriptor: tkoL2_v1.2 Authors: Yagi, S, Tagami, S. Deposit date: 2023-06-28 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (2.505 Å) Cite: Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins To Be Published
8JVR	Crystal structure of the dimeric RIFT fold protein Ph1_GG Descriptor: ACETIC ACID, Ph1_GG, SULFATE ION Authors: Yagi, S, Tagami, S. Deposit date: 2023-06-28 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (1.794 Å) Cite: Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins To Be Published
8JVW	Crystal structure of the dimeric DZBB fold protein tkoL2_v1.2_Z Descriptor: GLYCINE, tkoL2_v1.2_Z Authors: Yagi, S, Tagami, S. Deposit date: 2023-06-28 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (1.806 Å) Cite: Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins To Be Published
8JVP	Crystal structure of the dimeric DZBB fold protein Ph1 Descriptor: Ph1, SULFATE ION Authors: Yagi, S, Tagami, S. Deposit date: 2023-06-28 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (1.302 Å) Cite: Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins To Be Published
8JVQ	Crystal structure of the dimeric RIFT fold protein Ph1_DG Descriptor: CITRIC ACID, Ph1_DG, SULFATE ION Authors: Yagi, S, Tagami, S. Deposit date: 2023-06-28 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (1.401 Å) Cite: Missing-link fold reveals the evolutionary pathway between RNA polymerase and ribosomal proteins To Be Published

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