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5J0R	Binary complex crystal structure of DNA polymerase Beta with C:A mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.001 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0X	Binary complex crystal structure of DNA polymerase Beta with T:G mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0O	Binary complex crystal structure of DNA polymerase Beta with A:A mismatch at the primer terminus Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*AP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0W	Binary complex crystal structure of DNA polymerase Beta with T:C mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
2PFO	DNA Polymerase lambda in complex with DNA and dUPNPP Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DNA polymerase lambda, ... Authors: Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A. Deposit date: 2007-04-05 Release date: 2007-05-15 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2 Å) Cite: Role of the catalytic metal during polymerization by DNA polymerase lambda. DNA Repair, 6, 2007
2W7P	Structure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine Adduct Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3', 5'-D(TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP* TP*CP*CP*CP*CP*C)-3', ... Authors: Irimia, A, Egli, M. Deposit date: 2008-12-23 Release date: 2009-06-16 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.71 Å) Cite: Structural and Functional Elucidation of the Mechanism Promoting Error-Prone Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-Oxo-2'-Deoxyguanosine Adduct. J.Biol.Chem., 284, 2009
2W7O	Structure and Activity of Bypass Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-oxodeoxyguanosine Adduct Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3', 5'-D(TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP*CP*TP* TP*CP*CP*CP*CP*C)-3', ... Authors: Irimia, A, Egli, M. Deposit date: 2008-12-23 Release date: 2009-06-16 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.16 Å) Cite: Structural and Functional Elucidation of the Mechanism Promoting Error-Prone Synthesis by Human DNA Polymerase Kappa Opposite the 7,8-Dihydro-8-Oxo-2'-Deoxyguanosine Adduct. J.Biol.Chem., 284, 2009
5J0P	Binary complex crystal structure of DNA polymerase Beta with A:C mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0S	Binary complex crystal structure of DNA polymerase Beta with C:T mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0U	Binary complex crystal structure of DNA polymerase Beta with G:G mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0Q	Binary complex crystal structure of DNA polymerase Beta with A:G mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0T	Binary complex crystal structure of DNA polymerase Beta with G:A mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5HBX	RNA primer-template complex with 2-methylimidazole-activated monomer analogue-2 binding sites Descriptor: RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3'), [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid Authors: Zhang, W, Tam, C.P, Szostak, J.W. Deposit date: 2016-01-03 Release date: 2016-12-07 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Unusual Base-Pairing Interactions in Monomer-Template Complexes. ACS Cent Sci, 2, 2016
2HGH	Transcription Factor IIIA zinc fingers 4-6 bound to 5S rRNA 55mer (NMR structure) Descriptor: 55-MER, Transcription factor IIIA, ZINC ION Authors: Lee, B.M. Deposit date: 2006-06-27 Release date: 2006-08-01 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Induced Fit and 'Lock and Key' Recognition of 5 S RNA by Zinc Fingers of Transcription Factor IIIA J.Mol.Biol., 357, 2006
3SV3	Crystal structure of the large fragment of DNA polymerase I from Thermus Aquaticus in a closed ternary complex with the artificial base pair dNaM-d5SICSTP Descriptor: (5'-D(*AP*AP*AP*(BMN)P*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3'), 2-{2-deoxy-5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-6-methylisoquinoline-1(2H)-thione, ... Authors: Betz, K, Diederichs, K, Marx, A. Deposit date: 2011-07-12 Release date: 2012-06-06 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: KlenTaq polymerase replicates unnatural base pairs by inducing a Watson-Crick geometry. Nat.Chem.Biol., 8, 2012
5VU6	TNA polymerase binary complex with primer/template duplex Descriptor: DNA polymerase, DNA template, DNA/TNA hybrid primer Authors: Chim, N, Chaput, J.C. Deposit date: 2017-05-18 Release date: 2017-12-06 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis for TNA synthesis by an engineered TNA polymerase. Nat Commun, 8, 2017
5HBW	RNA primer-template complex with 2-methylimidazole-activated monomer analogue Descriptor: RNA (5'-R(*(LCC)P*(TLN)P*(LCG)P*UP*AP*CP*A)-3'), [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid Authors: Zhang, W, Tam, C.P, Szostak, J.W. Deposit date: 2016-01-03 Release date: 2016-12-07 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Unusual Base-Pairing Interactions in Monomer-Template Complexes. ACS Cent Sci, 2, 2016
8BHW	Full-length bacterial polysaccharide co-polymerase WzzE from E. coli. C4 symmetry Descriptor: ECA polysaccharide chain length modulation protein Authors: Wiseman, B, Hogbom, M. Deposit date: 2022-11-01 Release date: 2023-07-26 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Alternating L4 loop architecture of the bacterial polysaccharide co-polymerase WzzE. Commun Biol, 6, 2023
4H61	Structure of the Schizosaccharomyces pombe Mediator subunit Med6 Descriptor: Mediator of RNA polymerase II transcription subunit 6 Authors: Lariviere, L, Plaschka, C, Seizl, M, Wenzeck, L, Kurth, F, Cramer, P. Deposit date: 2012-09-19 Release date: 2012-10-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure of the Mediator head module. Nature, 492, 2012
5J0Y	Binary complex crystal structure of DNA polymerase Beta with T:T mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
1TLH	T4 AsiA bound to sigma70 region 4 Descriptor: 10 kDa anti-sigma factor, RNA polymerase sigma factor rpoD Authors: Lambert, L.J, Wei, Y, Schirf, V, Demeler, B, Werner, M.H. Deposit date: 2004-06-09 Release date: 2004-11-23 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: T4 AsiA blocks DNA recognition by remodeling sigma(70) region 4 Embo J., 23, 2004
2PFN	Na in the active site of DNA Polymerase lambda Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DNA polymerase lambda, Downstream Primer, ... Authors: Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A. Deposit date: 2007-04-05 Release date: 2007-05-15 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Role of the catalytic metal during polymerization by DNA polymerase lambda. DNA Repair, 6, 2007
2PFQ	Manganese promotes catalysis in a DNA polymerase lambda-DNA crystal Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA polymerase lambda, Downstream Primer, ... Authors: Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A. Deposit date: 2007-04-05 Release date: 2007-05-15 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Role of the catalytic metal during polymerization by DNA polymerase lambda. DNA Repair, 6, 2007
5O7T	Crystal structure of KlenTaq mutant M747K in a closed ternary complex with a dG:dCTP base pair Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA polymerase I, thermostable, ... Authors: Betz, K, Diederichs, K, Marx, A. Deposit date: 2017-06-09 Release date: 2017-11-29 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for the selective incorporation of an artificial nucleotide opposite a DNA adduct by a DNA polymerase. Chem. Commun. (Camb.), 53, 2017
1AJF	SOLUTION STRUCTURE OF THE P5B STEM LOOP FROM A GROUP I INTRON COMPLEXED WITH COBALT (III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: COBALT HEXAMMINE(III), RNA (5'-R(*GP*AP*CP*AP*GP*GP*GP*GP*AP*AP*AP*CP*UP*UP*UP*GP*UP*C)-3') Authors: Kieft, J.S, Tinoco Junior, I. Deposit date: 1997-05-02 Release date: 1997-07-07 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine. Structure, 5, 1997

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