PDB: 59042 resultsInfo pagesStatus searchChemie searchBIRD

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8SF0	Cryo-EM Structure of RyR1 + cAMP (Local Refinement of TMD) Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Ryanodine receptor 1, ZINC ION Authors: Cholak, S, Saville, J.W, Zhu, X, Berezuk, A.M, Tuttle, K.S, Haji-Ghassemi, O, Van Petegem, F, Subramaniam, S. Deposit date: 2023-04-10 Release date: 2023-05-24 Last modified: 2024-10-23 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Allosteric modulation of ryanodine receptor RyR1 by nucleotide derivatives. Structure, 31, 2023
8SET	Cryo-EM Structure of RyR1 + cAMP Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Glutathione S-transferase class-mu 26 kDa isozyme,Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 1, ... Authors: Cholak, S, Saville, J.W, Zhu, X, Berezuk, A.M, Tuttle, K.S, Haji-Ghassemi, O, Van Petegem, F, Subramaniam, S. Deposit date: 2023-04-10 Release date: 2023-05-24 Last modified: 2024-11-13 Method: ELECTRON MICROSCOPY (3.42 Å) Cite: Allosteric modulation of ryanodine receptor RyR1 by nucleotide derivatives. Structure, 31, 2023
4IIK	Legionella pneumophila effector Descriptor: Adenosine monophosphate-protein hydrolase SidD, CHLORIDE ION, GLYCEROL, ... Authors: Tascon, I, Chen, Y, Neunuebel, M.R, Rojas, A.L, Machner, M.P, Hierro, A. Deposit date: 2012-12-20 Release date: 2013-06-19 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural Basis for Rab1 De-AMPylation by the Legionella pneumophila Effector SidD Plos Pathog., 9, 2013
4IIP	Legionella pneumophila effector Descriptor: Adenosine monophosphate-protein hydrolase SidD, CHLORIDE ION, GLYCEROL Authors: Tascon, I, Chen, Y, Neunuebel, M.R, Rojas, A.L, Machner, M.P, Hierro, A. Deposit date: 2012-12-20 Release date: 2013-06-19 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural Basis for Rab1 De-AMPylation by the Legionella pneumophila Effector SidD Plos Pathog., 9, 2013
4LAQ	Crystal structure of a therapeutic single chain antibody in the free form Descriptor: D-MALATE, NICKEL (II) ION, SULFATE ION, ... Authors: Celikel, R, Gokulan, K, Peterson, E.C, Varughese, K.I. Deposit date: 2013-06-20 Release date: 2014-01-08 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural characterization of a therapeutic anti-methamphetamine antibody fragment: oligomerization and binding of active metabolites. Plos One, 8, 2013
6D9M	T4-Lysozyme fusion to Geobacter GGDEF Descriptor: ACETATE ION, Fusion protein of Endolysin,Response receiver sensor diguanylate cyclase, GAF domain-containing, ... Authors: Hallberg, Z, Doxzen, K, Kranzusch, P.J, Hammond, M. Deposit date: 2018-04-30 Release date: 2019-04-10 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Structure and mechanism of a Hypr GGDEF enzyme that activates cGAMP signaling to control extracellular metal respiration. Elife, 8, 2019
5O3S	Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in Apo state, hexagonal crystal form Descriptor: Membrane-associated protein slr1513 Authors: Selim, K.A, Albrecht, R, Forchhammer, K, Hartmann, M.D. Deposit date: 2017-05-24 Release date: 2018-05-16 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.2 Å) Cite: PII-like signaling protein SbtB links cAMP sensing with cyanobacterial inorganic carbon response. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5O3P	Carbon regulatory PII-like protein SbtB from Synechocystis sp. 6803 in Apo state, trigonal crystal form Descriptor: DI(HYDROXYETHYL)ETHER, Membrane-associated protein slr1513, PENTAETHYLENE GLYCOL Authors: Selim, K.A, Albrecht, R, Forchhammer, K, Hartmann, M.D. Deposit date: 2017-05-24 Release date: 2018-05-16 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.75 Å) Cite: PII-like signaling protein SbtB links cAMP sensing with cyanobacterial inorganic carbon response. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7TGL	Crystal structure of AMP+PPi bound DesD, the desferrioxamine synthetase from the Streptomyces griseoflavus ferrimycin biosynthetic pathway Descriptor: ADENOSINE MONOPHOSPHATE, Desferrioxamine synthetase DesD, GLYCEROL, ... Authors: Patel, K.D, Gulick, A.M. Deposit date: 2022-01-07 Release date: 2022-07-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.89 Å) Cite: An acyl-adenylate mimic reveals the structural basis for substrate recognition by the iterative siderophore synthetase DesD. J.Biol.Chem., 298, 2022
6W6Y	Crystal Structure of ADP ribose phosphatase of NSP3 from SARS CoV-2 in complex with AMP Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE MONOPHOSPHATE, Non-structural protein 3 Authors: Michalska, K, Kim, Y, Jedrzejczak, R, Maltseva, N, Endres, M, Mesecar, A, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2020-03-18 Release date: 2020-03-25 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.451 Å) Cite: Crystal structures of SARS-CoV-2 ADP-ribose phosphatase: from the apo form to ligand complexes. Iucrj, 7, 2020
6XB3	Structure of AcNPV poxin in post-reactive state with Gp[2'-5']Ap[3'] Descriptor: 2',5'-GpAp, Poxin Authors: Eaglesham, J.B, McCarty, K.L, Kranzusch, P.J. Deposit date: 2020-06-05 Release date: 2020-11-25 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structures of diverse poxin cGAMP nucleases reveal a widespread role for cGAS-STING evasion in host-pathogen conflict. Elife, 9, 2020
6O3P	Crystal structure of the catalytic domain of mouse Nudt12 in complex with AMP and 3 Mg2+ ions Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, Peroxisomal NADH pyrophosphatase NUDT12, ... Authors: Tong, L, Wu, Y. Deposit date: 2019-02-27 Release date: 2019-05-29 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural and mechanistic basis of mammalian Nudt12 RNA deNADding. Nat.Chem.Biol., 15, 2019
6VAA	Structure of the Fanconi Anemia ID complex bound to ICL DNA Descriptor: DNA (26-MER), DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), ... Authors: Pavletich, N.P. Deposit date: 2019-12-17 Release date: 2020-03-18 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: DNA clamp function of the monoubiquitinated Fanconi anaemia ID complex. Nature, 580, 2020
1QUE	X-RAY STRUCTURE OF THE FERREDOXIN:NADP+ REDUCTASE FROM THE CYANOBACTERIUM ANABAENA PCC 7119 AT 1.8 ANGSTROMS Descriptor: FERREDOXIN--NADP+ REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION Authors: Serre, L, Frey, M, Vellieux, F.M.D. Deposit date: 1996-07-06 Release date: 1997-05-15 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.8 Å) Cite: X-ray structure of the ferredoxin:NADP+ reductase from the cyanobacterium Anabaena PCC 7119 at 1.8 A resolution, and crystallographic studies of NADP+ binding at 2.25 A resolution. J.Mol.Biol., 263, 1996
1QUF	X-RAY STRUCTURE OF A COMPLEX NADP+-FERREDOXIN:NADP+ REDUCTASE FROM THE CYANOBACTERIUM ANABAENA PCC 7119 AT 2.25 ANGSTROMS Descriptor: FERREDOXIN-NADP+ REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Serre, L, Frey, M, Vellieux, F.M.D. Deposit date: 1996-09-07 Release date: 1997-09-17 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.25 Å) Cite: X-ray structure of the ferredoxin:NADP+ reductase from the cyanobacterium Anabaena PCC 7119 at 1.8 A resolution, and crystallographic studies of NADP+ binding at 2.25 A resolution. J.Mol.Biol., 263, 1996
9LTK	Crystal structur of Lpg1618(R215F) from Legionella pneumophila Descriptor: Beta-lactamase, GLYCEROL, SULFATE ION Authors: Liu, T, Gao, J, Ge, H. Deposit date: 2025-02-06 Release date: 2025-06-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural and molecular characterization of AmpS, a class D beta-lactamase from Legionella pneumophila. Int.J.Biol.Macromol., 312, 2025
8CIL	Crystal structure of Coxiella burnetii Fic protein 2 Descriptor: Fic family protein Authors: Hoepfner, D, Itzen, A, Pogenberg, V. Deposit date: 2023-02-10 Release date: 2023-11-15 Method: X-RAY DIFFRACTION (1.98 Å) Cite: The DNA-binding induced (de)AMPylation activity of a Coxiella burnetii Fic enzyme targets Histone H3. Commun Biol, 6, 2023
6VAD	Fanconi Anemia ID complex Descriptor: Fanconi anemia group D2 protein, Fanconi anemia, complementation group I Authors: Pavletich, N.P. Deposit date: 2019-12-17 Release date: 2020-03-18 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: DNA clamp function of the monoubiquitinated Fanconi anaemia ID complex. Nature, 580, 2020
8PD3	Ligand-free SpSLC9C1 in lipid nanodiscs, protomer state 2 Descriptor: Sperm-specific sodium proton exchanger Authors: Kalienkova, V, Peter, M, Rheinberger, J, Paulino, C. Deposit date: 2023-06-11 Release date: 2023-11-08 Last modified: 2025-07-09 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structures of a sperm-specific solute carrier gated by voltage and cAMP. Nature, 623, 2023
8PCZ	Ligand-free SpSLC9C1 in lipid nanodiscs, dimer Descriptor: Sperm-specific sodium proton exchanger Authors: Kalienkova, V, Peter, M, Rheinberger, J, Paulino, C. Deposit date: 2023-06-11 Release date: 2023-11-08 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.21 Å) Cite: Structures of a sperm-specific solute carrier gated by voltage and cAMP. Nature, 623, 2023
8PD2	Ligand-free SpSLC9C1 in lipid nanodiscs, protomer state 1 Descriptor: Sperm-specific sodium proton exchanger Authors: Kalienkova, V, Peter, M, Rheinberger, J, Paulino, C. Deposit date: 2023-06-11 Release date: 2023-11-08 Last modified: 2025-07-09 Method: ELECTRON MICROSCOPY (3.25 Å) Cite: Structures of a sperm-specific solute carrier gated by voltage and cAMP. Nature, 623, 2023
8PD7	Ligand-free SpSLC9C1 in lipid nanodiscs, protomer state 4 Descriptor: Sperm-specific sodium proton exchanger Authors: Kalienkova, V, Peter, M, Rheinberger, J, Paulino, C. Deposit date: 2023-06-11 Release date: 2023-11-08 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structures of a sperm-specific solute carrier gated by voltage and cAMP. Nature, 623, 2023
8PD5	Ligand-free SpSLC9C1 in lipid nanodiscs, protomer state 3 Descriptor: Sperm-specific sodium proton exchanger Authors: Kalienkova, V, Peter, M, Rheinberger, J, Paulino, C. Deposit date: 2023-06-11 Release date: 2023-11-08 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structures of a sperm-specific solute carrier gated by voltage and cAMP. Nature, 623, 2023
1M5E	X-RAY STRUCTURE OF THE GLUR2 LIGAND BINDING CORE (S1S2J) IN COMPLEX WITH ACPA AT 1.46 A RESOLUTION Descriptor: (S)-2-AMINO-3-(3-CARBOXY-5-METHYLISOXAZOL-4-YL)PROPIONIC ACID, ACETATE ION, Glutamate receptor 2, ... Authors: Hogner, A, Kastrup, J.S, Jin, R, Liljefors, T, Mayer, M.L, Egebjerg, J, Larsen, I.K, Gouaux, E. Deposit date: 2002-07-09 Release date: 2002-09-18 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.46 Å) Cite: Structural Basis for AMPA Receptor Activation and Ligand Selectivity: Crystal Structures of Five Agonist Complexes with the GluR2 Ligand-binding Core J.Mol.Biol., 322, 2002
8SF3	Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (AMP, Acetate and CoA bound) Descriptor: ACETATE ION, ADENOSINE MONOPHOSPHATE, Acetyl-coenzyme A synthetase, ... Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2023-04-10 Release date: 2023-04-19 Last modified: 2024-11-27 Method: X-RAY DIFFRACTION (1.7 Å) Cite: A single Leishmania adenylate-forming enzyme of the ANL superfamily generates both acetyl- and acetoacetyl-CoA. J.Biol.Chem., 300, 2024

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