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5FPE
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BU of 5fpe by Molmil
Structure of heat shock-related 70kDA protein 2 with small-molecule ligand 1H-1,2,4-triazol-3-amine (AT485) in an alternate binding site.
Descriptor: 3-AMINO-1,2,4-TRIAZOLE, HEAT SHOCK-RELATED 70KDA PROTEIN 2
Authors:Jhoti, H, Ludlow, R.F, Patel, S, Saini, H.K, Tickle, I.J, Verdonk, M.
Deposit date:2015-11-28
Release date:2015-12-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Detection of Secondary Binding Sites in Proteins Using Fragment Screening.
Proc.Natl.Acad.Sci.USA, 112, 2015
6I9L
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BU of 6i9l by Molmil
JmjC domain-containing protein 5 (JMJD5) in complex with Mn and pyridine-2,4-dicarboxylic acid (2,4-PDCA)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, JmjC domain-containing protein 5, MANGANESE (II) ION, ...
Authors:Chowdhury, R, Islam, M.S, Schofield, C.J.
Deposit date:2018-11-23
Release date:2019-12-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Structural analysis of the 2-oxoglutarate binding site of the circadian rhythm linked oxygenase JMJD5.
Sci Rep, 12, 2022
7M3P
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BU of 7m3p by Molmil
Xrcc4-Spc110p(164-207) fusion
Descriptor: Xrcc4-Spc110p(164-207)
Authors:Brilot, A.F, Lyon, A.S, Zelter, A, Viswanath, S, Maxwell, A, MacCoss, M.J, Muller, E.G, Sali, A, Davis, T.N, Agard, D.A.
Deposit date:2021-03-18
Release date:2021-05-12
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.0000186 Å)
Cite:CM1-driven assembly and activation of yeast gamma-tubulin small complex underlies microtubule nucleation.
Elife, 10, 2021
3WOA
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BU of 3woa by Molmil
Crystal structure of lambda repressor (1-45) fused with maltose-binding protein
Descriptor: Repressor protein CI, Maltose-binding periplasmic protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Hanazono, Y, Takeda, K, Miki, K.
Deposit date:2013-12-25
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Co-translational folding of alpha-helical proteins: structural studies of intermediate-length variants of the lambda repressor.
FEBS Open Bio, 8, 2018
5H2X
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BU of 5h2x by Molmil
Crystal structure of the karyopherin Kap60p bound to the SUMO protease Ulp1p (150-172)
Descriptor: Importin subunit alpha, Ubiquitin-like-specific protease 1
Authors:Hirano, H, Matsuura, Y.
Deposit date:2016-10-18
Release date:2016-12-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of the Karyopherins Kap121p and Kap60p Bound to the Nuclear Pore-Targeting Domain of the SUMO Protease Ulp1p
J. Mol. Biol., 429, 2017
8TEW
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BU of 8tew by Molmil
Human cytomegalovirus penton vertex, CVSC-bound configuration
Descriptor: Capsid vertex component 1, Capsid vertex component 2, Large structural phosphoprotein, ...
Authors:Jih, J, Liu, Y.T, Liu, W, Zhou, H.
Deposit date:2023-07-07
Release date:2024-03-06
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:The incredible bulk: Human cytomegalovirus tegument architectures uncovered by AI-empowered cryo-EM.
Sci Adv, 10, 2024
2HBM
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BU of 2hbm by Molmil
Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain; Protein in complex with Mn, Zn, and UMP
Descriptor: Exosome complex exonuclease RRP6, MANGANESE (II) ION, URIDINE-5'-MONOPHOSPHATE, ...
Authors:Midtgaard, S.F, Assenholt, J, Jonstrup, A.T, Van, L.B, Jensen, T.H, Brodersen, D.E.
Deposit date:2006-06-14
Release date:2006-07-25
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.
Proc.Natl.Acad.Sci.Usa, 103, 2006
5FPM
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BU of 5fpm by Molmil
Structure of heat shock-related 70kDA protein 2 with small-molecule ligand 5-phenyl-1,3,4-oxadiazole-2-thiol (AT809) in an alternate binding site.
Descriptor: 5-PHENYL-1,3,4-OXADIAZOLE-2-THIOL, HEAT SHOCK-RELATED 70KDA PROTEIN 2
Authors:Jhoti, H, Ludlow, R.F, Patel, S, Saini, H.K, Tickle, I.J, Verdonk, M.
Deposit date:2015-12-02
Release date:2015-12-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Detection of Secondary Binding Sites in Proteins Using Fragment Screening.
Proc.Natl.Acad.Sci.USA, 112, 2015
2KUU
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BU of 2kuu by Molmil
Solution Structure of K10 TLS RNA (GC mutant in upper helix)
Descriptor: K10 TLS RNA
Authors:Bullock, S.L, Ringel, I, Ish-Horowicz, D, Lukavsky, P.J.
Deposit date:2010-03-01
Release date:2010-05-19
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A'-form RNA helices are required for cytoplasmic mRNA transport in Drosophila.
Nat.Struct.Mol.Biol., 17, 2010
8E2R
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BU of 8e2r by Molmil
Crystal structure of TadAC-1.14
Descriptor: GLYCEROL, ZINC ION, tRNA-specific adenosine deaminase 1.14
Authors:Feliciano, P.R, Lee, S.J, Ciaramella, G.
Deposit date:2022-08-15
Release date:2023-01-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Improved cytosine base editors generated from TadA variants.
Nat.Biotechnol., 41, 2023
8E2S
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BU of 8e2s by Molmil
Crystal structure of TadAC-1.19
Descriptor: ZINC ION, tRNA-specific adenosine deaminase 1.19
Authors:Feliciano, P.R, Lee, S.J, Ciaramella, G.
Deposit date:2022-08-15
Release date:2023-01-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Improved cytosine base editors generated from TadA variants.
Nat.Biotechnol., 41, 2023
2KW4
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BU of 2kw4 by Molmil
Solution NMR Structure of the Holo Form of a Ribonuclease H domain from D.hafniense, Northeast Structural Genomics Consortium Target DhR1A
Descriptor: MAGNESIUM ION, Uncharacterized protein
Authors:Mills, J.L, Eletsky, A, Hua, J, Belote, R.L, Buchwald, W.A, Ciccosanti, C, Janjua, H, Nair, R, Rost, B, Acton, T.B, Xiao, R, Everett, J.K, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2010-03-31
Release date:2010-05-05
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Northeast Structural Genomics Consortium Target DhR1A
To be Published
2KQ2
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BU of 2kq2 by Molmil
Solution NMR structure of the apo form of a ribonuclease H domain of protein DSY1790 from Desulfitobacterium hafniense, Northeast Structural Genomics target DhR1A
Descriptor: Ribonuclease H-related protein
Authors:Mills, J.L, Eletsky, A, Hua, J, Belote, R.L, Buchwald, W.A, Ciccosanti, C, Janjua, H, Nair, R, Rost, B, Acton, T.B, Xiao, R, Everett, J.K, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
Deposit date:2009-10-24
Release date:2010-03-16
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution NMR structure of the apo form of a ribonuclease H domain of protein DSY1790 from Desulfitobacterium hafniense, Northeast Structural Genomics target DhR1A
To be Published
8TIA
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BU of 8tia by Molmil
CryoEM structure of locally-refined tetramer of Shedu nuclease domain from Bacillus cereus
Descriptor: Shedu protein SduA
Authors:Gu, Y, Corbett, K.
Deposit date:2023-07-19
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (2.77 Å)
Cite:Shedu anti-phage nucleases share a common enzymatic core regulated by diverse sensor domains
to be published
8TI9
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BU of 8ti9 by Molmil
CryoEM structure of octamer assembly of Shedu nuclease domain from Bacillus cereus
Descriptor: Shedu protein SduA
Authors:Gu, Y, Corbett, K.
Deposit date:2023-07-19
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Shedu anti-phage nucleases share a common enzymatic core regulated by diverse sensor domains
to be published
8TI8
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BU of 8ti8 by Molmil
CryoEM structure of Shedu from Bacillus cereus
Descriptor: Shedu protein SduA
Authors:Gu, Y, Corbett, K.
Deposit date:2023-07-19
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Shedu anti-phage nucleases share a common enzymatic core regulated by diverse sensor domains
to be published
6H0U
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BU of 6h0u by Molmil
Glycogen synthase kinase-3 beta (GSK3) complex with a covalent [1,2,4]triazolo[1,5-a][1,3,5]triazine inhibitor
Descriptor: (2~{R})-3-[7-azanyl-5-(cyclohexylamino)-[1,2,4]triazolo[1,5-a][1,3,5]triazin-2-yl]-2-cyano-propanamide, CHLORIDE ION, GLYCEROL, ...
Authors:Marcovich, I, Demitri, N, De Zorzi, R, Storici, P.
Deposit date:2018-07-10
Release date:2019-05-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A Triazolotriazine-Based Dual GSK-3 beta /CK-1 delta Ligand as a Potential Neuroprotective Agent Presenting Two Different Mechanisms of Enzymatic Inhibition.
Chemmedchem, 14, 2019
5ETB
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BU of 5etb by Molmil
Crystal structure of the human BRPF1 bromodomain in complex with SEED13
Descriptor: 1-(7-methyl-1~{H}-indol-3-yl)ethanone, NITRATE ION, Peregrin
Authors:Zhu, J, Caflisch, A.
Deposit date:2015-11-17
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Twenty Crystal Structures of Bromodomain and PHD Finger Containing Protein 1 (BRPF1)/Ligand Complexes Reveal Conserved Binding Motifs and Rare Interactions.
J.Med.Chem., 59, 2016
5ETD
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BU of 5etd by Molmil
Crystal structure of the human BRPF1 bromodomain in complex with SEED14
Descriptor: 1-(1~{H}-indol-3-yl)ethanone, NITRATE ION, Peregrin
Authors:Zhu, J, Caflisch, A.
Deposit date:2015-11-17
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Twenty Crystal Structures of Bromodomain and PHD Finger Containing Protein 1 (BRPF1)/Ligand Complexes Reveal Conserved Binding Motifs and Rare Interactions.
J.Med.Chem., 59, 2016
2J4K
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BU of 2j4k by Molmil
Crystal structure of uridylate kinase from Sulfolobus solfataricus in complex with UMP to 2.2 Angstrom resolution
Descriptor: CADMIUM ION, MAGNESIUM ION, URIDINE-5'-MONOPHOSPHATE, ...
Authors:Jensen, K.S, Johansson, E, Jensen, K.F.
Deposit date:2006-09-01
Release date:2007-02-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Enzymatic Investigation of the Sulfolobus Solfataricus Uridylate Kinase Shows Competitive Utp Inhibition and the Lack of GTP Stimulation
Biochemistry, 46, 2007
8U77
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BU of 8u77 by Molmil
Crystal structure of Taf14 in complex with Yng1
Descriptor: Protein YNG1, Transcription initiation factor TFIID subunit 14
Authors:Nguyen, M.C, Wei, P.C, Zhang, G.Y, Kutateladze, T.G.
Deposit date:2023-09-14
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Molecular insight into interactions between the Taf14, Yng1 and Sas3 subunits of the NuA3 complex.
Nat Commun, 15, 2024
8U3S
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BU of 8u3s by Molmil
Structure of human TIRR in complex with VHH4 nanobody
Descriptor: Nanobody, Tudor-interacting repair regulator protein
Authors:Botuyan, M.V, Mer, G.
Deposit date:2023-09-08
Release date:2024-09-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:NEAT1 modulates the TIRR/53BP1 complex to maintain genome integrity.
Nat Commun, 15, 2024
5G4V
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BU of 5g4v by Molmil
Association of four two-k-turn units based on Kt-7 3bG,3nC, forming a square-shaped structure
Descriptor: 50S RIBOSOMAL PROTEIN L7AE, HMKT-7
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2016-05-17
Release date:2016-09-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:A Quasi-Cyclic RNA Nano-Scale Molecular Object Constructed Using Kink Turns.
Nanoscale, 8, 2016
8C76
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BU of 8c76 by Molmil
Light-state 2.5 Angstrom wild-type X-ray crystal structure of the cobalamin binding domain belonging to a light-dependent transcription regulator TtCarH obtained under aerobic conditions from a form 2 crystal illuminated during 5 s
Descriptor: COBALAMIN, Probable transcriptional regulator
Authors:Rios-Santacruz, R, Colletier, J.P, Schiro, G, Weik, M.
Deposit date:2023-01-12
Release date:2023-08-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Redox driven B 12 -ligand switch drives CarH photoresponse.
Nat Commun, 14, 2023
5GMK
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BU of 5gmk by Molmil
Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution
Descriptor: 5'-Exon, 5'-Splicing Site, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Wan, R, Yan, C, Bai, R, Huang, G, Shi, Y.
Deposit date:2016-07-14
Release date:2016-08-17
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of a yeast catalytic step I spliceosome at 3.4 angstrom resolution
Science, 353, 2016

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