Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6JLM
DownloadVisualize
BU of 6jlm by Molmil
XFEL structure of cyanobacterial photosystem II (dark state, dataset2)
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Suga, M, Shen, J.R.
Deposit date:2019-03-06
Release date:2019-10-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser.
Science, 366, 2019
3CZS
DownloadVisualize
BU of 3czs by Molmil
Golgi alpha-mannosidase II (D204A nucleophile mutant)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-mannosidase 2, ...
Authors:Shah, N, Rose, D.R.
Deposit date:2008-04-29
Release date:2008-06-24
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Golgi alpha-mannosidase II cleaves two sugars sequentially in the same catalytic site.
Proc.Natl.Acad.Sci.Usa, 105, 2008
5XGZ
DownloadVisualize
BU of 5xgz by Molmil
Metagenomic glucose-tolerant glycosidase
Descriptor: Beta-glycosidase, GLYCEROL, NICKEL (II) ION, ...
Authors:Watanabe, M, Matsuzawa, T, Yaoi, K.
Deposit date:2017-04-19
Release date:2018-05-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Improved thermostability of a metagenomic glucose-tolerant beta-glycosidase based on its X-ray crystal structure.
Appl.Microbiol.Biotechnol., 101, 2017
4JBT
DownloadVisualize
BU of 4jbt by Molmil
The 2.2 A crystal structure of CYP154C5 from Nocardia farcinica in complex with androstenedione
Descriptor: 4-ANDROSTENE-3-17-DIONE, Cytochrome P450 monooxygenase, FORMIC ACID, ...
Authors:Herzog, K, Hoffmann, K.M.
Deposit date:2013-02-20
Release date:2014-03-05
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Enzyme-substrate complex structures of CYP154C5 shed light on its mode of highly selective steroid hydroxylation.
Acta Crystallogr.,Sect.D, 70, 2014
3K1G
DownloadVisualize
BU of 3k1g by Molmil
Crystal structure of Dipeptide Epimerase from Enterococcus faecalis V583 complexed with Mg and dipeptide L-Ser-L-Tyr
Descriptor: Dipeptide Epimerase, GLYCEROL, MAGNESIUM ION, ...
Authors:Fedorov, A.A, Fedorov, E.V, Imker, H.J, Sakai, A, Gerlt, J.A, Almo, S.C.
Deposit date:2009-09-27
Release date:2010-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Homology models guide discovery of diverse enzyme specificities among dipeptide epimerases in the enolase superfamily.
Proc.Natl.Acad.Sci.USA, 109, 2012
6C0B
DownloadVisualize
BU of 6c0b by Molmil
Structural basis for recognition of frizzled proteins by Clostridium difficile toxin B
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Frizzled-2, MALONATE ION, ...
Authors:Chen, P, Lam, K, Jin, R.
Deposit date:2017-12-28
Release date:2018-05-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for recognition of frizzled proteins byClostridium difficiletoxin B.
Science, 360, 2018
3JUS
DownloadVisualize
BU of 3jus by Molmil
Crystal structure of human lanosterol 14alpha-demethylase (CYP51) in complex with econazole
Descriptor: 1-[(2R)-2-[(4-chlorobenzyl)oxy]-2-(2,4-dichlorophenyl)ethyl]-1H-imidazole, 1-[(2S)-2-[(4-CHLOROBENZYL)OXY]-2-(2,4-DICHLOROPHENYL)ETHYL]-1H-IMIDAZOLE, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), ...
Authors:Strushkevich, N, MacKenzie, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Usanov, S.A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2009-09-15
Release date:2010-03-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis of human CYP51 inhibition by antifungal azoles.
J. Mol. Biol., 397, 2010
6BOU
DownloadVisualize
BU of 6bou by Molmil
Human APE1 substrate complex with an T/C mismatch adjacent the THF
Descriptor: 21-mer DNA, DNA-(apurinic or apyrimidinic site) lyase
Authors:Freudenthal, B.D, Whitaker, A.M, Fairlamb, M.S.
Deposit date:2017-11-20
Release date:2018-08-15
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.538 Å)
Cite:Apurinic/apyrimidinic (AP) endonuclease 1 processing of AP sites with 5' mismatches.
Acta Crystallogr D Struct Biol, 74, 2018
3D60
DownloadVisualize
BU of 3d60 by Molmil
Crystal Structure Analysis of 1,5-alpha-arabinanase catalytic mutant (D27A)
Descriptor: CALCIUM ION, Intracellular arabinanase
Authors:Alhassid, A, Ben David, A, Shoham, Y, Shoham, G.
Deposit date:2008-05-18
Release date:2009-04-21
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of an inverting GH 43 1,5-alpha-L-arabinanase from Geobacillus stearothermophilus complexed with its substrate
Biochem.J., 422, 2009
7RGE
DownloadVisualize
BU of 7rge by Molmil
Crystal structure of phosphoadenylyl-sulfate (PAPS) reductase from Candida auris, phosphate complex
Descriptor: 3'-phosphoadenylylsulfate reductase, GLYCEROL, PHOSPHATE ION
Authors:Stogios, P.J, Evdokimova, E, Di Leo, R, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2021-07-15
Release date:2021-07-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystal structure of phosphoadenylyl-sulfate (PAPS) reductase from Candida auris, phosphate complex
To Be Published
3K2W
DownloadVisualize
BU of 3k2w by Molmil
CRYSTAL STRUCTURE OF betaine-aldehyde dehydrogenase FROM Pseudoalteromonas atlantica T6c
Descriptor: ACETATE ION, Betaine-aldehyde dehydrogenase, CHLORIDE ION, ...
Authors:Patskovsky, Y, Toro, R, Rutter, M, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-09-30
Release date:2009-10-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:CRYSTAL STRUCTURE OF betaine-aldehyde dehydrogenase FROM Pseudoalteromonas atlantica
To be Published
7W46
DownloadVisualize
BU of 7w46 by Molmil
Crystal structure of Bacillus subtilis YjoB with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Uncharacterized ATPase YjoB
Authors:Dahal, P, Kwon, E, Kim, D.Y.
Deposit date:2021-11-26
Release date:2022-10-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure and biochemical analysis suggest that YjoB ATPase is a putative substrate-specific molecular chaperone.
Proc.Natl.Acad.Sci.USA, 119, 2022
2WCA
DownloadVisualize
BU of 2wca by Molmil
BtGH84 in complex with n-butyl pugnac
Descriptor: CALCIUM ION, O-GLCNACASE BT_4395, [[(3R,4R,5S,6R)-3-(BUTANOYLAMINO)-4,5-DIHYDROXY-6-(HYDROXYMETHYL)OXAN-2-YLIDENE]AMINO] N-PHENYLCARBAMATE
Authors:He, Y, Davies, G.J.
Deposit date:2009-03-10
Release date:2009-06-16
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Insight Into a Strategy for Attenuating Ampc- Mediated Beta-Lactam Resistance: Structural Basis for Selective Inhibition of the Glycoside Hydrolase Nagz.
Protein Sci., 18, 2009
6BPH
DownloadVisualize
BU of 6bph by Molmil
Crystal structure of the chromodomain of RBBP1
Descriptor: AT-rich interactive domain-containing protein 4A, UNKNOWN ATOM OR ION
Authors:Liu, Y, Tempel, W, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
Deposit date:2017-11-23
Release date:2017-12-20
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of chromo barrel domain of RBBP1.
Biochem. Biophys. Res. Commun., 496, 2018
3K4D
DownloadVisualize
BU of 3k4d by Molmil
Crystal structure of E. coli beta-glucuronidase with the glucaro-d-lactam inhibitor bound
Descriptor: (2S,3R,4S,5R)-3,4,5-trihydroxy-6-oxopiperidine-2-carboxylic acid, Beta-glucuronidase
Authors:Wallace, B.D, Redinbo, M.R.
Deposit date:2009-10-05
Release date:2010-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.393 Å)
Cite:Alleviating cancer drug toxicity by inhibiting a bacterial enzyme.
Science, 330, 2010
6JQB
DownloadVisualize
BU of 6jqb by Molmil
The structure of maltooligosaccharide-forming amylase from Pseudomonas saccharophila STB07 with pseudo-maltoheptaose
Descriptor: 1,2-ETHANEDIOL, ACARBOSE DERIVED HEPTASACCHARIDE, CALCIUM ION, ...
Authors:Li, Z.F, Ban, X.F, Zhang, Z.Q, Li, C.M, Gu, Z.B, Jin, T.C, Li, Y.L, Shang, Y.H.
Deposit date:2019-03-30
Release date:2020-04-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.101 Å)
Cite:Structure of maltotetraose-forming amylase from Pseudomonas saccharophila STB07 provides insights into its product specificity.
Int.J.Biol.Macromol., 154, 2020
4R3W
DownloadVisualize
BU of 4r3w by Molmil
Crystal Structure Analysis of the 1,2,3-tricarboxylate benzoic acid bound to sp-ASADH-2'5'-ADP complex
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ADENOSINE-2'-5'-DIPHOSPHATE, ...
Authors:Pavlovsky, A.G, Viola, R.E.
Deposit date:2014-08-18
Release date:2014-12-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:A cautionary tale of structure-guided inhibitor development against an essential enzyme in the aspartate-biosynthetic pathway.
Acta Crystallogr.,Sect.D, 70, 2014
5XN8
DownloadVisualize
BU of 5xn8 by Molmil
Structure of glycerol dehydrogenase crystallised as a contaminant
Descriptor: GLYCEROL, Glycerol Dehydrogenase, ZINC ION
Authors:Hatti, K, Mathiharan, Y.K, Srinivasan, N, Murthy, M.R.N.
Deposit date:2017-05-19
Release date:2017-06-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Seeing but not believing: the structure of glycerol dehydrogenase initially assumed to be the structure of a survival protein from Salmonella typhimurium
Acta Crystallogr.,Sect.D, 73, 2017
5XNT
DownloadVisualize
BU of 5xnt by Molmil
Structure of CYP106A2 from Bacillus sp. PAMC 23377
Descriptor: Cytochrome P450 CYP106, PROTOPORPHYRIN IX CONTAINING FE
Authors:Lee, C.W, Kim, K.-H, Bikash, D, Park, S.-H, Park, H, Oh, T.-J, Lee, J.H.
Deposit date:2017-05-24
Release date:2018-04-04
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure and Functional Characterization of a Cytochrome P450 (BaCYP106A2) fromBacillussp. PAMC 23377.
J. Microbiol. Biotechnol., 27, 2017
4JGX
DownloadVisualize
BU of 4jgx by Molmil
The Structure of Sterol Carrier Protein 2 from the Yeast Yarrowia Lipolytica
Descriptor: CITRIC ACID, Fatty acid-binding protein, PALMITIC ACID
Authors:De Berti, F.P, Capaldi, S, Acierno, J.P, Klinke, S, Monaco, H.L, Ermacora, M.R.
Deposit date:2013-03-04
Release date:2013-12-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of sterol carrier protein 2 from Yarrowia lipolytica and the evolutionary conservation of a large, non-specific lipid-binding cavity.
J.Struct.Funct.Genom., 14, 2013
6J75
DownloadVisualize
BU of 6j75 by Molmil
Structure of 3,6-anhydro-L-galactose Dehydrogenase
Descriptor: Aldehyde dehydrogenase A
Authors:Li, P.Y, Wang, Y, Chen, X.L, Zhang, Y.Z.
Deposit date:2019-01-17
Release date:2020-01-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.695 Å)
Cite:3,6-Anhydro-L-Galactose Dehydrogenase VvAHGD is a Member of a New Aldehyde Dehydrogenase Family and Catalyzes by a Novel Mechanism with Conformational Switch of Two Catalytic Residues Cysteine 282 and Glutamate 248.
J.Mol.Biol., 432, 2020
6FFI
DownloadVisualize
BU of 6ffi by Molmil
Crystal Structure of mGluR5 in complex with MMPEP at 2.2 A
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-[2-(3-methoxyphenyl)ethynyl]-6-methyl-pyridine, Metabotropic glutamate receptor 5,Endolysin,Metabotropic glutamate receptor 5, ...
Authors:Christopher, J.A, Orgovan, Z, Congreve, M, Dore, A.S, Errey, J.C, Marshall, F.H, Mason, J.S, Okrasa, K, Rucktooa, P, Serrano-Vega, M.J, Ferenczy, G.G, Keseru, G.M.
Deposit date:2018-01-08
Release date:2018-03-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-Based Optimization Strategies for G Protein-Coupled Receptor (GPCR) Allosteric Modulators: A Case Study from Analyses of New Metabotropic Glutamate Receptor 5 (mGlu5) X-ray Structures.
J.Med.Chem., 62, 2019
7W42
DownloadVisualize
BU of 7w42 by Molmil
Crystal structure of Bacillus subtilis YjoB
Descriptor: Uncharacterized ATPase YjoB
Authors:Dahal, P, Kwon, E, Kim, D.Y.
Deposit date:2021-11-26
Release date:2022-10-19
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.619 Å)
Cite:Crystal structure and biochemical analysis suggest that YjoB ATPase is a putative substrate-specific molecular chaperone.
Proc.Natl.Acad.Sci.USA, 119, 2022
6JR7
DownloadVisualize
BU of 6jr7 by Molmil
Flavobacterium johnsoniae GH31 dextranase, FjDex31A, complexed with glucose
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, Candidate alpha-glycosidase Glycoside hydrolase family 31, ...
Authors:Tonozuka, T.
Deposit date:2019-04-02
Release date:2019-04-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural insights into polysaccharide recognition by Flavobacterium johnsoniae dextranase, a member of glycoside hydrolase family 31.
Febs J., 287, 2020
6BRE
DownloadVisualize
BU of 6bre by Molmil
Hen Egg-White Lysozyme cocrystallized with Cadmium sulphate using CuKalpha source.
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, CHLORIDE ION, ...
Authors:Sakon, J, Caviness, P, Jack, T, Pickens, J.B, Reed, P, Ruth, C.
Deposit date:2017-11-30
Release date:2018-01-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Hen Egg-White Lysozyme (HEWL) cocrystallized with Cadmium sulphate.
To Be Published

224004

건을2024-08-21부터공개중

PDB statisticsPDBj update infoContact PDBjnumon