PDB: 238582 resultsInfo pagesStatus searchChemie searchBIRD

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9OGK	Refinement of PDB-3J5R against EMD-8117 using EMAN2 Descriptor: Transient receptor potential cation channel subfamily V member 1 Authors: Chen, M. Deposit date: 2025-04-30 Release date: 2025-06-04 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Building molecular model series from heterogeneous CryoEM structures using Gaussian mixture models and deep neural networks. Commun Biol, 8, 2025
6XSJ	X-ray structure of a monoclinic form of alpha amylase from Aspergillus at 1.4 A resolution Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: McPherson, A. Deposit date: 2020-07-15 Release date: 2020-10-14 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structures of two novel crystal forms of Aspergillus oryzae alpha amylase (taka-amylase). J.Biosci.Bioeng., 131, 2021
6HOR	Human protein kinase CK2 alpha in complex with feruloylmethane Descriptor: (~{E})-4-(3-methoxy-4-oxidanyl-phenyl)but-3-en-2-one, 1,2-ETHANEDIOL, Casein kinase II subunit alpha, ... Authors: Battistutta, R, Lolli, G. Deposit date: 2018-09-18 Release date: 2019-10-02 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Biochemical and cellular mechanism of protein kinase CK2 inhibition by deceptive curcumin. Febs J., 287, 2020
9O38	Transmembrane domains of the human sweet receptor (TAS1R2 + TAS1R3) from Class 3 particles (rigidly fitted from PDB:9NOX and 9NOR) Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Nanobody 35 (NB35), ... Authors: Juen, Z, Lu, Z, Yu, R, Chang, A.N, Wang, B, Fitzpatrick, A.W.P, Zuker, C.S. Deposit date: 2025-04-06 Release date: 2025-05-14 Last modified: 2025-05-21 Method: ELECTRON MICROSCOPY (3 Å) Cite: The structure of human sweetness. Cell, 2025
8I5S	Crystal structure of TxGH116 D593N acid/base mutant from Thermoanaerobacterium xylanolyticum with 2-deoxy-2-fluoroglucoside Descriptor: 1,2-ETHANEDIOL, 2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-glucopyranoside, 2-deoxy-2-fluoro-alpha-D-glucopyranose, ... Authors: Pengthaisong, S, Ketudat Cairns, J.R. Deposit date: 2023-01-26 Release date: 2023-05-03 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Reaction Mechanism of Glycoside Hydrolase Family 116 Utilizes Perpendicular Protonation. Acs Catalysis, 13, 2023
3FUB	Crystal structure of GDNF-GFRalpha1 complex Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Parkash, V, Goldman, A. Deposit date: 2009-01-14 Release date: 2009-06-02 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Comparison of GFL-GFRalpha complexes: further evidence relating GFL bend angle to RET signalling Acta Crystallogr.,Sect.F, 65, 2009
7O07	14-3-3sigma covalently bound to peptide (chloroacetamide-Cys interaction) Descriptor: 14-3-3 protein sigma, MAGNESIUM ION, Transcriptional coactivator YAP1 Authors: Somsen, B.A, Ottmann, C. Deposit date: 2021-03-25 Release date: 2021-10-13 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Covalent flexible peptide docking in Rosetta. Chem Sci, 12, 2021
3EV0	Crystal Structure of Ribonuclease A in 70% Dimethyl Sulfoxide Descriptor: DIMETHYL SULFOXIDE, Ribonuclease pancreatic Authors: Dechene, M, Wink, G, Smith, M, Swartz, P, Mattos, C. Deposit date: 2008-10-12 Release date: 2009-06-23 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Multiple solvent crystal structures of ribonuclease A: An assessment of the method Proteins, 76, 2009
3EV3	Crystal Structure of Ribonuclease A in 70% t-Butanol Descriptor: Ribonuclease pancreatic, TERTIARY-BUTYL ALCOHOL Authors: Dechene, M, Wink, G, Smith, M, Swartz, P, Mattos, C. Deposit date: 2008-10-12 Release date: 2009-06-23 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (1.68 Å) Cite: Multiple solvent crystal structures of ribonuclease A: An assessment of the method Proteins, 76, 2009
3EUY	Crystal Structure of Ribonuclease A in 50% Dioxane Descriptor: 1,4-DIETHYLENE DIOXIDE, Ribonuclease pancreatic Authors: Dechene, M, Wink, G, Smith, M, Swartz, P, Mattos, C. Deposit date: 2008-10-12 Release date: 2009-06-23 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Multiple solvent crystal structures of ribonuclease A: An assessment of the method Proteins, 76, 2009
3EV6	Crystal Structure of Ribonuclease A in 50% R,S,R-Bisfuranol Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-ol, Ribonuclease pancreatic Authors: Dechene, M, Wink, G, Smith, M, Swartz, P, Mattos, C. Deposit date: 2008-10-12 Release date: 2009-06-23 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Multiple solvent crystal structures of ribonuclease A: An assessment of the method Proteins, 76, 2009
3EUX	Crystal Structure of Crosslinked Ribonuclease A Descriptor: Ribonuclease pancreatic Authors: Dechene, M, Wink, G, Smith, M, Swartz, P, Mattos, C. Deposit date: 2008-10-12 Release date: 2009-06-23 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Multiple solvent crystal structures of ribonuclease A: An assessment of the method Proteins, 76, 2009
3EV4	Crystal Structure of Ribonuclease A in 50% Trifluoroethanol Descriptor: Ribonuclease pancreatic, TRIFLUOROETHANOL Authors: Dechene, M, Wink, G, Smith, M, Swartz, P, Mattos, C. Deposit date: 2008-10-12 Release date: 2009-06-23 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Multiple solvent crystal structures of ribonuclease A: An assessment of the method Proteins, 76, 2009
3EUZ	Crystal Structure of Ribonuclease A in 50% Dimethylformamide Descriptor: DIMETHYLFORMAMIDE, Ribonuclease pancreatic Authors: Dechene, M, Wink, G, Smith, M, Swartz, P, Mattos, C. Deposit date: 2008-10-12 Release date: 2009-06-23 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.84 Å) Cite: Multiple solvent crystal structures of ribonuclease A: An assessment of the method Proteins, 76, 2009
3EV1	Crystal Structure of Ribonuclease A in 70% Hexanediol Descriptor: HEXANE-1,6-DIOL, Ribonuclease pancreatic Authors: Dechene, M, Wink, G, Smith, M, Swartz, P, Mattos, C. Deposit date: 2008-10-12 Release date: 2009-06-23 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2 Å) Cite: Multiple solvent crystal structures of ribonuclease A: An assessment of the method Proteins, 76, 2009
3EV2	Crystal Structure of Ribonuclease A in 70% Isopropanol Descriptor: ISOPROPYL ALCOHOL, Ribonuclease pancreatic Authors: Dechene, M, Wink, G, Smith, M, Swartz, P, Mattos, C. Deposit date: 2008-10-12 Release date: 2009-06-23 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Multiple solvent crystal structures of ribonuclease A: An assessment of the method Proteins, 76, 2009
3EV5	Crystal Structure of Ribonuclease A in 1M Trimethylamine N-Oxide Descriptor: Ribonuclease pancreatic, trimethylamine oxide Authors: Dechene, M, Wink, G, Smith, M, Swartz, P, Mattos, C. Deposit date: 2008-10-12 Release date: 2009-06-23 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.68 Å) Cite: Multiple solvent crystal structures of ribonuclease A: An assessment of the method Proteins, 76, 2009
6XSV	X-ray structure of a tetragonal crystal form of alpha amylase from Aspergillus oryzae (Tala-Amylase) at 1.65 A resolution Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-amylase, ... Authors: McPherson, A. Deposit date: 2020-07-16 Release date: 2020-10-14 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Structures of two novel crystal forms of Aspergillus oryzae alpha amylase (taka-amylase). J.Biosci.Bioeng., 131, 2021
6TO0	Structure of E70A mutant of Rex8A from Paenibacillus barcinonensis complexed with 2(3)-alpha-L-arabinofuranosyl-xylotriose. Descriptor: GLYCEROL, Reducing-end xylose-releasing exo-oligoxylanase Rex8A, alpha-L-arabinofuranose-(1-2)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose Authors: Jimenez-Ortega, E, Ramirez-Escudero, M, Sanz-Aparicio, J. Deposit date: 2019-12-11 Release date: 2020-05-27 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.88 Å) Cite: Structural analysis of the reducing-end xylose-releasing exo-oligoxylanase Rex8A from Paenibacillus barcinonensis BP-23 deciphers its molecular specificity. Febs J., 287, 2020
7DFS	Crystal structure of a novel 4-O-alpha-L-rhamnosyl-beta-D-glucuronidase from Fusarium oxysporum 12S - Rha-GlcA complex Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-O-alpha-L-rhamnosyl-beta-D-glucuronidase, alpha-D-mannopyranose, ... Authors: Kondo, T, Arakawa, T, Fushinobu, S, Sakamoto, T. Deposit date: 2020-11-09 Release date: 2021-03-17 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.49 Å) Cite: Biochemical and structural characterization of a novel 4-O-alpha-l-rhamnosyl-beta-d-glucuronidase from Fusarium oxysporum. Febs J., 288, 2021
8D6K	Sco GlgEI-V279S in complex with cyclohexyl carbasugar Descriptor: (1R,4S,5S,6R)-4-(cyclohexylamino)-5,6-dihydroxy-2-(hydroxymethyl)cyclohex-2-en-1-yl alpha-D-glucopyranoside, Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 1, DI(HYDROXYETHYL)ETHER Authors: Jayasinghe, T.J, Ronning, D.R. Deposit date: 2022-06-06 Release date: 2022-10-19 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.73 Å) Cite: Synthesis of C 7 /C 8 -cyclitols and C 7 N-aminocyclitols from maltose and X-ray crystal structure of Streptomyces coelicolor GlgEI V279S in a complex with an amylostatin GXG-like derivative. Front Chem, 10, 2022
6R35	Structure of the LecB lectin from Pseudomonas aeruginosa strain PAO1 in complex with lewis x tetrasaccharide Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Fucose-binding lectin PA-IIL, ... Authors: Lepsik, M, Sommer, R, Kuhaudomlarp, S, Lelimousin, M, Varrot, A, Titz, A, Imberty, A. Deposit date: 2019-03-19 Release date: 2019-06-12 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Induction of rare conformation of oligosaccharide by binding to calcium-dependent bacterial lectin: X-ray crystallography and modelling study. Eur.J.Med.Chem., 177, 2019
5E4J	Acetylcholinesterase Methylene Blue no PEG Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholinesterase, DECAMETHONIUM ION, ... Authors: Dym, O. Deposit date: 2015-10-06 Release date: 2016-03-30 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.54 Å) Cite: The impact of crystallization conditions on structure-based drug design: A case study on the methylene blue/acetylcholinesterase complex. Protein Sci., 25, 2016
3DV2	Crystal Structure of nicotinic acid mononucleotide adenylyltransferase from Bacillus anthracis Descriptor: Nicotinate (Nicotinamide) nucleotide adenylyltransferase, SULFATE ION Authors: Lu, S, Smith, C.D, Yang, Z, Pruett, P.S, Nagy, L, McCombs, D.P, DeLucas, L.J, Brouillette, W.J, Brouillette, C.G. Deposit date: 2008-07-18 Release date: 2008-11-04 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of nicotinic acid mononucleotide adenylyltransferase from Bacillus anthracis. ACTA CRYSTALLOGR.,SECT.F, 64, 2008
3FSJ	Crystal structure of benzoylformate decarboxylase in complex with the inhibitor MBP Descriptor: 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-{(S)-hydroxy[(R)-hydroxy(methoxy)phosphoryl]phenylmethyl}-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium, Benzoylformate decarboxylase, CALCIUM ION Authors: Brandt, G.S, Kenyon, G.L, McLeish, M.J, Jordan, F, Petsko, G.A, Ringe, D. Deposit date: 2009-01-09 Release date: 2009-01-27 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.37 Å) Cite: Snapshot of a reaction intermediate: analysis of benzoylformate decarboxylase in complex with a benzoylphosphonate inhibitor. Biochemistry, 48, 2009

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