PDB: 79322 resultsInfo pagesStatus searchChemie searchBIRD

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3OTE	Crystal structure of human tRNAHis guanylyltransferase (Thg1)- Native I Descriptor: tRNA(His) guanylyltransferase Authors: Hyde, S.J, Eckenroth, B.E, Doublie, S. Deposit date: 2010-09-11 Release date: 2010-11-17 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.56 Å) Cite: tRNAHis guanylyltransferase (THG1), a unique 3'-5' nucleotidyl transferase, shares unexpected structural homology with canonical 5'-3' DNA polymerases. Proc.Natl.Acad.Sci.USA, 107, 2010
4K4T	Poliovirus polymerase elongation complex (r4_form) Descriptor: GLYCEROL, RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3'), ... Authors: Gong, P, Peersen, O.B. Deposit date: 2013-04-12 Release date: 2013-05-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts. Plos One, 8, 2013
4K4V	Poliovirus polymerase elongation complex (r5+1_form) Descriptor: DNA/RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*A)-D(P*C)-3'), RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*UP*CP*GP*UP*CP*GP*AP*AP*A)-3'), RNA-directed RNA polymerase 3D-POL, ... Authors: Gong, P, Peersen, O.B. Deposit date: 2013-04-12 Release date: 2013-05-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.63 Å) Cite: Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts. Plos One, 8, 2013
4K4S	Poliovirus polymerase elongation complex (r3_form) Descriptor: GLYCEROL, RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*CP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3'), ... Authors: Gong, P, Peersen, O.B. Deposit date: 2013-04-12 Release date: 2013-05-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts. Plos One, 8, 2013
2Q1O	Crystal Structure Analysis of the RNA Dodecamer CGC-NF2-AAUUGGCG, with an Incorporated 2,4-Difluorotoluyl Residue (NF2) Descriptor: RNA (5'-R(*CP*GP*CP*(NF2)P*AP*AP*UP*UP*GP*GP*CP*G)-3') Authors: Li, F, Pallan, P.S. Deposit date: 2007-05-25 Release date: 2007-10-30 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Crystal structure, stability and in vitro RNAi activity of oligoribonucleotides containing the ribo-difluorotoluyl nucleotide: insights into substrate requirements by the human RISC Ago2 enzyme. Nucleic Acids Res., 35, 2007
4K4Y	Coxsackievirus B3 polymerase elongation complex (r2+1_form) Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, ACETATE ION, DNA/RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*(DOC))-3'), ... Authors: Gong, P, Peersen, O.B. Deposit date: 2013-04-12 Release date: 2013-05-29 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.72 Å) Cite: Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts. Plos One, 8, 2013
4K4Z	Coxsackievirus B3 polymerase elongation complex (r2_Mg_form) Descriptor: MAGNESIUM ION, RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*GP*AP*AP*A)-3'), RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3'), ... Authors: Gong, P, Peersen, O.B. Deposit date: 2013-04-12 Release date: 2013-05-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.17 Å) Cite: Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts. Plos One, 8, 2013
4K50	Rhinovirus 16 polymerase elongation complex (r1_form) Descriptor: ACETATE ION, GLYCEROL, RNA (33-MER), ... Authors: Gong, P, Peersen, O.B. Deposit date: 2013-04-12 Release date: 2013-05-22 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.93 Å) Cite: Structures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts. Plos One, 8, 2013
6EMU	Crystal Structure of dual specific Trm10 construct from Thermococcus kodakaraensis. Descriptor: GLYCEROL, S-ADENOSYLMETHIONINE, tRNA (guanine(9)-/adenine(9)-N1)-methyltransferase Authors: Singh, R.K, Versees, W. Deposit date: 2017-10-03 Release date: 2018-06-13 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.29745436 Å) Cite: Structural and biochemical analysis of the dual-specificity Trm10 enzyme fromThermococcus kodakaraensisprompts reconsideration of its catalytic mechanism. RNA, 24, 2018
6L5N	Crystal structure of human DEAD-box RNA helicase DDX21 at post-unwound state Descriptor: MAGNESIUM ION, Nucleolar RNA helicase 2, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Chen, Z.J, Hu, X.J, Zhou, Z, Li, J.X. Deposit date: 2019-10-24 Release date: 2020-06-17 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.242 Å) Cite: Structural Basis of Human Helicase DDX21 in RNA Binding, Unwinding, and Antiviral Signal Activation. Adv Sci, 7, 2020
6EMT	Crystal Structure of dual specific Trm10 construct from Thermococcus kodakaraensis. Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, GLYCEROL, ... Authors: Singh, R.K, Versees, W. Deposit date: 2017-10-03 Release date: 2018-06-13 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.794 Å) Cite: Structural and biochemical analysis of the dual-specificity Trm10 enzyme fromThermococcus kodakaraensisprompts reconsideration of its catalytic mechanism. RNA, 24, 2018
6EMV	Crystal Structure of dual specific Trm10 construct from Thermococcus kodakaraensis. Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, tRNA (guanine(9)-/adenine(9)-N1)-methyltransferase Authors: Singh, R.K, Versees, W. Deposit date: 2017-10-03 Release date: 2018-06-13 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.9000144 Å) Cite: Structural and biochemical analysis of the dual-specificity Trm10 enzyme fromThermococcus kodakaraensisprompts reconsideration of its catalytic mechanism. RNA, 24, 2018
6L1W	Zinc-finger Antiviral Protein (ZAP) bound to RNA Descriptor: RNA (5'-R(*CP*GP*UP*CP*GP*U)-3'), ZINC ION, Zinc finger CCCH-type antiviral protein 1 Authors: Luo, X, Wang, X, Gao, Y, Zhu, J, Liu, S, Gao, G, Gao, P. Deposit date: 2019-09-30 Release date: 2020-01-01 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.194 Å) Cite: Molecular Mechanism of RNA Recognition by Zinc-Finger Antiviral Protein. Cell Rep, 30, 2020
3TS0	Mouse Lin28A in complex with let-7f-1 microRNA pre-element Descriptor: Protein lin-28 homolog A, RNA (5'-R(*GP*GP*GP*GP*UP*AP*GP*UP*GP*AP*UP*UP*UP*UP*AP*CP*CP*CP*UP*GP*GP*AP*G)-3'), ZINC ION Authors: Nam, Y, Sliz, P. Deposit date: 2011-09-11 Release date: 2011-11-16 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.763 Å) Cite: Molecular Basis for Interaction of let-7 MicroRNAs with Lin28. Cell(Cambridge,Mass.), 147, 2011
9J3R	Enterococcus faecalis ROOL RNA tetramer Descriptor: RNA (580-MER) Authors: Wang, L, Xie, J.H, Shang, S.T, Su, Z.M. Deposit date: 2024-08-08 Release date: 2025-03-19 Last modified: 2025-05-14 Method: ELECTRON MICROSCOPY (4.72 Å) Cite: Cryo-EM reveals mechanisms of natural RNA multivalency. Science, 388, 2025
9J3T	Enterococcus faecalis ROOL RNA octamer Descriptor: RNA (580-MER) Authors: Wang, L, Xie, J.H, Shang, S.T, Su, Z.M. Deposit date: 2024-08-08 Release date: 2025-03-19 Last modified: 2025-05-14 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Cryo-EM reveals mechanisms of natural RNA multivalency. Science, 388, 2025
5CM2	Structure of Y. lipolytica Trm9-Trm112 complex, a methyltransferase modifying U34 in the anticodon loop of some tRNAs Descriptor: TRNA METHYLTRANSFERASE, TRNA METHYLTRANSFERASE ACTIVATOR SUBUNIT, ZINC ION Authors: Letoquart, J, van Tran, N, Caroline, V, Aleksandrov, A, Lazar, N, Van Tilbeurgh, H, Liger, D, Graille, M. Deposit date: 2015-07-16 Release date: 2015-10-21 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Insights into molecular plasticity in protein complexes from Trm9-Trm112 tRNA modifying enzyme crystal structure. Nucleic Acids Res., 43, 2015
1N53	SOLUTION STRUCTURE OF B. SUBTILIS T BOX ANTITERMINATOR RNA Descriptor: RNA (5'-R(*GP*AP*GP*GP*GP*UP*GP*GP*AP*AP*CP*CP*GP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*CP*CP*CP*UP*C)-3') Authors: Gerdeman, M.S, Henkin, T.M, Hines, J.V. Deposit date: 2002-11-04 Release date: 2003-04-29 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution Structure of the Bacillus subtilis T-box Antiterminator RNA: Seven Nucleotide Bulge Characterized by Stacking and Flexibility J.Mol.Biol., 326, 2003
3U1M	Structure of the mRNA splicing complex component Cwc2 Descriptor: Pre-mRNA-splicing factor CWC2, ZINC ION Authors: Lu, P, Lu, G, Yan, C, Wang, L, Li, W, Yin, P. Deposit date: 2011-09-30 Release date: 2011-11-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structure of the mRNA splicing complex component Cwc2: insights into RNA recognition Biochem.J., 441, 2012
3TS2	Mouse Lin28A in complex with let-7g microRNA pre-element Descriptor: Protein lin-28 homolog A, RNA (5'-R(*GP*GP*GP*GP*UP*CP*UP*AP*UP*GP*AP*UP*AP*CP*CP*AP*CP*CP*CP*CP*GP*GP*AP*G)-3'), ZINC ION Authors: Nam, Y, Sliz, P. Deposit date: 2011-09-11 Release date: 2011-11-16 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Molecular Basis for Interaction of let-7 MicroRNAs with Lin28. Cell(Cambridge,Mass.), 147, 2011
3U1L	Structure of the mRNA splicing complex component Cwc2 Descriptor: Pre-mRNA-splicing factor CWC2, ZINC ION Authors: Lu, P, Lu, G, Yan, C, Wang, L, Li, W, Yin, P. Deposit date: 2011-09-30 Release date: 2011-11-16 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.64 Å) Cite: Structure of the mRNA splicing complex component Cwc2: insights into RNA recognition Biochem.J., 441, 2012
3TRZ	Mouse Lin28A in complex with let-7d microRNA pre-element Descriptor: Protein lin-28 homolog A, RNA (5'-R(*GP*GP*GP*CP*AP*GP*GP*GP*AP*UP*UP*UP*UP*GP*CP*CP*CP*GP*GP*AP*G)-3'), ZINC ION Authors: Nam, Y, Sliz, P. Deposit date: 2011-09-11 Release date: 2011-11-16 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Molecular Basis for Interaction of let-7 MicroRNAs with Lin28. Cell(Cambridge,Mass.), 147, 2011
6E53	Structure of TERT in complex with a novel telomerase inhibitor Descriptor: MAGNESIUM ION, RNA/DNA hairpin, Telomerase reverse transcriptase, ... Authors: Hernandez-Sanchez, W, Huang, W, Plucinsky, B, Garcia-Vazquez, N, Berdis, A.J, Skordalakes, E, Taylor, D.J. Deposit date: 2018-07-19 Release date: 2019-03-27 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.8 Å) Cite: A non-natural nucleotide uses a specific pocket to selectively inhibit telomerase activity. Plos Biol., 17, 2019
5VR4	RNA octamer containing 2'-F-4'-OMe U. Descriptor: COBALT TETRAAMMINE ION, RNA (5'-R(*CP*GP*AP*AP*(UMO)P*UP*CP*G)-3') Authors: Harp, J.M, Egli, M. Deposit date: 2017-05-10 Release date: 2017-10-04 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.5 Å) Cite: 4'-C-Methoxy-2'-deoxy-2'-fluoro Modified Ribonucleotides Improve Metabolic Stability and Elicit Efficient RNAi-Mediated Gene Silencing. J. Am. Chem. Soc., 139, 2017
3SYW	Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations Descriptor: PHOSPHATE ION, RNA (5'-R(*UP*UP*GP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*GP*GP*UP*CP*C)-3') Authors: Kumar, A, Park, H, Pengfei, F, Parkesh, R, Guo, M, Nettles, K.W, Disney, M.D. Deposit date: 2011-07-18 Release date: 2012-04-25 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.57 Å) Cite: Crystal Structure of the Triplet Repeat in Myotonic Dystrophy Reveals Heterogeneous 1x1 Nucleotide UU Internal Loop Conformations Biochemistry, 50, 2011

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